Wall clock time and date at job start Tue Mar 31 2020 12:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47346 * 2 1 4 4 C 1.52996 * 109.47198 * 120.00217 * 2 1 3 5 5 N 1.46504 * 109.47173 * 175.09283 * 4 2 1 6 6 C 1.46504 * 119.99708 * 276.40196 * 5 4 2 7 7 C 1.50704 * 109.47043 * 274.28855 * 6 5 4 8 8 H 1.07995 * 120.00137 * 355.07517 * 7 6 5 9 9 C 1.37881 * 119.99652 * 175.08058 * 7 6 5 10 10 N 1.31510 * 120.00160 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99677 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47180 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47023 * 119.99773 * 11 9 7 14 14 H 1.48499 * 109.47247 * 239.99575 * 11 9 7 15 15 C 1.34771 * 120.00124 * 96.40345 * 5 4 2 16 16 O 1.21281 * 120.00089 * 183.96390 * 15 5 4 17 17 C 1.50700 * 119.99982 * 3.96061 * 15 5 4 18 18 H 1.08995 * 109.33789 * 326.53299 * 17 15 5 19 19 O 1.42724 * 109.34011 * 207.01370 * 17 15 5 20 20 C 1.43210 * 113.13870 * 188.05860 * 19 17 15 21 21 C 1.52964 * 108.47037 * 70.70284 * 20 19 17 22 22 C 1.50747 * 109.75538 * 310.77168 * 21 20 19 23 23 C 1.38592 * 118.76032 * 196.87128 * 22 21 20 24 24 C 1.38071 * 120.27463 * 180.24062 * 23 22 21 25 25 C 1.38254 * 119.86298 * 359.97438 * 24 23 22 26 26 C 1.38054 * 119.89785 * 359.91789 * 25 24 23 27 27 C 1.37902 * 121.34985 * 16.94870 * 22 21 20 28 28 H 1.08999 * 109.46998 * 304.82090 * 1 2 3 29 29 H 1.09004 * 109.47461 * 64.82376 * 1 2 3 30 30 H 1.09000 * 109.47117 * 184.82183 * 1 2 3 31 31 H 1.09002 * 109.46806 * 240.00081 * 2 1 3 32 32 H 1.08994 * 109.46641 * 66.28766 * 3 2 1 33 33 H 1.08997 * 109.47212 * 186.29313 * 3 2 1 34 34 H 1.08996 * 109.46824 * 306.28966 * 3 2 1 35 35 H 1.09003 * 109.47206 * 55.09181 * 4 2 1 36 36 H 1.09000 * 109.47275 * 295.08901 * 4 2 1 37 37 H 1.09007 * 109.46640 * 154.29264 * 6 5 4 38 38 H 1.09004 * 109.47046 * 34.29142 * 6 5 4 39 39 H 0.97002 * 119.99956 * 180.02562 * 10 9 7 40 40 H 1.09001 * 109.63308 * 311.00971 * 20 19 17 41 41 H 1.09004 * 109.63512 * 190.40364 * 20 19 17 42 42 H 1.08994 * 109.42904 * 190.68006 * 21 20 19 43 43 H 1.09008 * 109.42568 * 70.85296 * 21 20 19 44 44 H 1.08000 * 119.86474 * 0.26314 * 23 22 21 45 45 H 1.08000 * 120.06592 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.05281 * 179.90916 * 25 24 23 47 47 H 1.07994 * 119.84979 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5002 -0.8244 1.1916 6 6 4.1284 -1.9147 0.4412 7 6 4.2367 -3.1331 1.3215 8 1 3.9477 -3.0761 2.3605 9 6 4.7050 -4.3207 0.8003 10 7 5.0566 -4.3902 -0.4650 11 14 4.8385 -5.8311 1.8912 12 1 4.3833 -5.4923 3.2636 13 1 3.9873 -6.9162 1.3406 14 1 6.2516 -6.2853 1.9369 15 6 4.2656 0.0836 1.8288 16 8 5.4730 0.0407 1.7222 17 6 3.6212 1.1522 2.6737 18 1 2.6646 1.4328 2.2330 19 8 4.4721 2.2972 2.7175 20 6 4.0276 3.2935 3.6453 21 6 4.2450 2.7655 5.0644 22 6 3.6801 1.3728 5.1820 23 6 3.4513 0.8505 6.4451 24 6 2.9394 -0.4237 6.5892 25 6 2.6535 -1.1815 5.4688 26 6 2.8791 -0.6611 4.2101 27 6 3.3925 0.6185 4.0639 28 1 -0.3633 0.5868 0.8437 29 1 -0.3634 0.4372 -0.9301 30 1 -0.3633 -1.0240 0.0864 31 1 1.8932 -0.5138 -0.8900 32 1 1.7715 1.9227 0.9409 33 1 3.1241 1.4445 -0.1126 34 1 1.5877 1.9878 -0.8283 35 1 1.6066 -1.7205 1.2942 36 1 1.7502 -0.1592 2.1370 37 1 5.1242 -1.6084 0.1206 38 1 3.5218 -2.1508 -0.4331 39 1 5.3856 -5.2258 -0.8317 40 1 2.9679 3.4942 3.4874 41 1 4.6020 4.2089 3.5029 42 1 3.7435 3.4213 5.7760 43 1 5.3126 2.7433 5.2833 44 1 3.6739 1.4427 7.3204 45 1 2.7620 -0.8272 7.5752 46 1 2.2544 -2.1791 5.5780 47 1 2.6551 -1.2536 3.3355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749920091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:02 Heat of formation + Delta-G solvation = -54.837203 kcal Electronic energy + Delta-G solvation = -28441.200133 eV Core-core repulsion = 24781.902494 eV Total energy + Delta-G solvation = -3659.297640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75872 -38.72382 -37.43234 -36.28186 -33.69160 -33.05154 -32.36843 -31.60376 -29.48721 -27.87443 -27.09693 -26.17256 -25.23869 -23.85498 -23.12074 -21.88171 -20.32605 -20.11849 -18.44481 -17.38189 -16.85340 -16.43801 -16.27982 -15.51899 -15.23248 -14.93487 -14.66221 -14.52451 -14.24635 -13.99530 -13.72721 -13.46141 -13.31278 -13.07515 -12.65335 -12.55861 -12.23639 -12.22710 -12.06879 -11.84210 -11.72901 -11.54465 -11.31023 -11.12723 -10.92166 -10.84404 -10.73877 -10.66682 -10.56572 -10.36575 -10.15456 -9.60618 -9.51517 -9.14055 -8.63045 -8.45074 -8.37132 -7.67131 -6.05823 -4.10597 1.36481 1.47042 3.19561 3.28212 3.36088 3.38401 3.49193 3.86943 4.26811 4.43647 4.63142 4.70219 4.82202 4.92575 5.03677 5.06919 5.10653 5.15189 5.23799 5.25925 5.29025 5.40051 5.43205 5.49163 5.59734 5.70069 5.73563 5.74551 5.84146 5.84729 5.95732 6.05721 6.06205 6.15486 6.17955 6.25970 6.46045 6.50886 6.54987 6.60824 6.64084 6.98155 7.07921 7.18858 7.44043 7.52506 7.90758 8.21684 8.36016 8.87744 9.05078 9.54536 11.02131 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.005693 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.084231 B = 4916.948905 C = 6058.163059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.150 4.150 4 C 0.104 3.896 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.523 3.477 16 O -0.519 6.519 17 C 0.102 3.898 18 H 0.096 0.904 19 O -0.348 6.348 20 C 0.057 3.943 21 C -0.115 4.115 22 C -0.070 4.070 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.107 4.107 27 C -0.108 4.108 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.263 0.737 40 H 0.054 0.946 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.687 13.569 9.289 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.207 4.207 4 C -0.020 4.020 5 N -0.324 5.324 6 C 0.127 3.873 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.307 3.693 16 O -0.394 6.394 17 C 0.041 3.959 18 H 0.113 0.887 19 O -0.265 6.265 20 C -0.020 4.020 21 C -0.152 4.152 22 C -0.070 4.070 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.125 4.125 27 C -0.109 4.109 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.143 0.857 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.766 13.421 8.958 18.861 hybrid contribution -0.129 -1.074 0.826 1.361 sum -9.894 12.347 9.784 18.604 Atomic orbital electron populations 1.21767 0.94924 1.01927 1.01426 1.21572 0.95493 0.96515 1.00137 1.21987 1.01860 0.95952 1.00890 1.21780 0.81776 1.01593 0.96836 1.48169 1.05193 1.28053 1.51027 1.19331 0.94508 0.82422 0.91044 1.21467 1.43826 0.94545 0.96739 0.92329 1.24914 0.95170 0.98818 0.95056 1.69939 1.43793 1.26803 1.12627 0.86488 0.77882 0.82665 0.80693 1.19754 1.20948 1.20892 1.19597 0.87414 0.81991 0.80290 1.90679 1.14001 1.72988 1.61709 1.21207 0.94777 0.87427 0.92456 0.88700 1.88187 1.50373 1.27031 1.60926 1.22666 0.99801 0.91546 0.87954 1.21133 1.02214 0.93303 0.98540 1.19414 0.98934 0.96100 0.92573 1.20962 1.00915 0.96175 0.96170 1.21108 0.99267 0.94437 0.98606 1.21127 1.00345 0.99857 0.92323 1.21588 0.97428 0.94391 0.99078 1.19848 1.01213 0.95534 0.94289 0.92958 0.92705 0.92311 0.90052 0.93090 0.92206 0.92661 0.89546 0.91314 0.93739 0.94451 0.92755 0.92730 0.88002 0.89816 0.89527 0.86133 0.86099 0.85731 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.15 0.34 -1.22 16 2 C -0.12 -1.65 3.12 -90.62 -0.28 -1.93 16 3 C -0.15 -2.00 7.82 37.16 0.29 -1.71 16 4 C 0.10 1.69 3.29 -4.04 -0.01 1.68 16 5 N -0.59 -12.46 1.73 -175.05 -0.30 -12.76 16 6 C 0.25 6.35 5.26 -5.19 -0.03 6.32 16 7 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 11 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.52 11.53 5.01 -10.99 -0.06 11.48 16 16 O -0.52 -14.05 16.19 -12.84 -0.21 -14.26 16 17 C 0.10 1.79 2.14 -29.05 -0.06 1.73 16 18 H 0.10 1.43 3.45 -51.93 -0.18 1.25 16 19 O -0.35 -6.06 10.10 -53.63 -0.54 -6.60 16 20 C 0.06 0.69 6.85 37.14 0.25 0.94 16 21 C -0.11 -1.33 6.00 -27.88 -0.17 -1.49 16 22 C -0.07 -1.01 5.78 -104.59 -0.60 -1.61 16 23 C -0.12 -1.58 9.67 -39.51 -0.38 -1.96 16 24 C -0.12 -1.49 10.05 -39.64 -0.40 -1.89 16 25 C -0.12 -1.75 10.05 -39.64 -0.40 -2.14 16 26 C -0.11 -1.81 8.21 -39.50 -0.32 -2.13 16 27 C -0.11 -1.81 5.39 -104.61 -0.56 -2.37 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.29 7.97 -51.93 -0.41 0.87 16 32 H 0.05 0.61 6.07 -51.93 -0.32 0.30 16 33 H 0.06 0.96 7.06 -51.93 -0.37 0.59 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.43 8.12 -51.93 -0.42 1.01 16 36 H 0.07 0.99 4.53 -51.93 -0.23 0.75 16 37 H 0.04 1.32 7.25 -51.93 -0.38 0.94 16 38 H 0.04 0.97 7.93 -51.93 -0.41 0.56 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.14 2.55 4.60 -52.49 -0.24 2.31 16 LS Contribution 367.16 15.07 5.53 5.53 Total: -1.00 -33.95 367.16 -9.77 -43.72 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.15 Total: 2.83 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.81 Total: -9.59 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.43 Total: -38.26 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.75 Total: -20.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.95 -9.77 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749920091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.121 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds