Wall clock time and date at job start Tue Mar 31 2020 12:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47346 * 2 1 4 4 C 1.52996 * 109.47198 * 120.00217 * 2 1 3 5 5 N 1.46504 * 109.47173 * 175.09283 * 4 2 1 6 6 C 1.46504 * 119.99708 * 276.40196 * 5 4 2 7 7 C 1.50704 * 109.47043 * 274.28855 * 6 5 4 8 8 H 1.07995 * 120.00137 * 355.07517 * 7 6 5 9 9 C 1.37881 * 119.99652 * 175.08058 * 7 6 5 10 10 N 1.31510 * 120.00160 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99677 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47180 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47023 * 119.99773 * 11 9 7 14 14 H 1.48499 * 109.47247 * 239.99575 * 11 9 7 15 15 C 1.34771 * 120.00124 * 96.40345 * 5 4 2 16 16 O 1.21281 * 120.00089 * 183.96390 * 15 5 4 17 17 C 1.50700 * 119.99982 * 3.96061 * 15 5 4 18 18 H 1.08995 * 109.33789 * 326.53299 * 17 15 5 19 19 O 1.42724 * 109.34011 * 207.01370 * 17 15 5 20 20 C 1.43210 * 113.13870 * 188.05860 * 19 17 15 21 21 C 1.52964 * 108.47037 * 70.70284 * 20 19 17 22 22 C 1.50747 * 109.75538 * 310.77168 * 21 20 19 23 23 C 1.38592 * 118.76032 * 196.87128 * 22 21 20 24 24 C 1.38071 * 120.27463 * 180.24062 * 23 22 21 25 25 C 1.38254 * 119.86298 * 359.97438 * 24 23 22 26 26 C 1.38054 * 119.89785 * 359.91789 * 25 24 23 27 27 C 1.37902 * 121.34985 * 16.94870 * 22 21 20 28 28 H 1.08999 * 109.46998 * 304.82090 * 1 2 3 29 29 H 1.09004 * 109.47461 * 64.82376 * 1 2 3 30 30 H 1.09000 * 109.47117 * 184.82183 * 1 2 3 31 31 H 1.09002 * 109.46806 * 240.00081 * 2 1 3 32 32 H 1.08994 * 109.46641 * 66.28766 * 3 2 1 33 33 H 1.08997 * 109.47212 * 186.29313 * 3 2 1 34 34 H 1.08996 * 109.46824 * 306.28966 * 3 2 1 35 35 H 1.09003 * 109.47206 * 55.09181 * 4 2 1 36 36 H 1.09000 * 109.47275 * 295.08901 * 4 2 1 37 37 H 1.09007 * 109.46640 * 154.29264 * 6 5 4 38 38 H 1.09004 * 109.47046 * 34.29142 * 6 5 4 39 39 H 0.97002 * 119.99956 * 180.02562 * 10 9 7 40 40 H 1.09001 * 109.63308 * 311.00971 * 20 19 17 41 41 H 1.09004 * 109.63512 * 190.40364 * 20 19 17 42 42 H 1.08994 * 109.42904 * 190.68006 * 21 20 19 43 43 H 1.09008 * 109.42568 * 70.85296 * 21 20 19 44 44 H 1.08000 * 119.86474 * 0.26314 * 23 22 21 45 45 H 1.08000 * 120.06592 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.05281 * 179.90916 * 25 24 23 47 47 H 1.07994 * 119.84979 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5002 -0.8244 1.1916 6 6 4.1284 -1.9147 0.4412 7 6 4.2367 -3.1331 1.3215 8 1 3.9477 -3.0761 2.3605 9 6 4.7050 -4.3207 0.8003 10 7 5.0566 -4.3902 -0.4650 11 14 4.8385 -5.8311 1.8912 12 1 4.3833 -5.4923 3.2636 13 1 3.9873 -6.9162 1.3406 14 1 6.2516 -6.2853 1.9369 15 6 4.2656 0.0836 1.8288 16 8 5.4730 0.0407 1.7222 17 6 3.6212 1.1522 2.6737 18 1 2.6646 1.4328 2.2330 19 8 4.4721 2.2972 2.7175 20 6 4.0276 3.2935 3.6453 21 6 4.2450 2.7655 5.0644 22 6 3.6801 1.3728 5.1820 23 6 3.4513 0.8505 6.4451 24 6 2.9394 -0.4237 6.5892 25 6 2.6535 -1.1815 5.4688 26 6 2.8791 -0.6611 4.2101 27 6 3.3925 0.6185 4.0639 28 1 -0.3633 0.5868 0.8437 29 1 -0.3634 0.4372 -0.9301 30 1 -0.3633 -1.0240 0.0864 31 1 1.8932 -0.5138 -0.8900 32 1 1.7715 1.9227 0.9409 33 1 3.1241 1.4445 -0.1126 34 1 1.5877 1.9878 -0.8283 35 1 1.6066 -1.7205 1.2942 36 1 1.7502 -0.1592 2.1370 37 1 5.1242 -1.6084 0.1206 38 1 3.5218 -2.1508 -0.4331 39 1 5.3856 -5.2258 -0.8317 40 1 2.9679 3.4942 3.4874 41 1 4.6020 4.2089 3.5029 42 1 3.7435 3.4213 5.7760 43 1 5.3126 2.7433 5.2833 44 1 3.6739 1.4427 7.3204 45 1 2.7620 -0.8272 7.5752 46 1 2.2544 -2.1791 5.5780 47 1 2.6551 -1.2536 3.3355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749920091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:00 Heat of formation + Delta-G solvation = -74.312424 kcal Electronic energy + Delta-G solvation = -28442.044642 eV Core-core repulsion = 24781.902494 eV Total energy + Delta-G solvation = -3660.142149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07973 -40.17246 -38.60287 -37.80627 -35.52860 -34.33896 -33.95930 -32.88140 -30.59391 -29.67750 -28.27304 -27.40104 -26.81370 -24.87870 -24.84135 -23.23752 -21.60235 -21.16857 -19.99612 -18.77080 -18.61299 -18.04044 -17.75157 -16.84797 -16.57670 -16.30507 -16.09534 -15.91575 -15.61052 -15.26481 -14.90986 -14.70876 -14.59641 -14.38451 -14.29587 -13.79893 -13.65601 -13.54504 -13.32230 -13.17912 -12.93498 -12.85931 -12.77150 -12.60305 -12.58664 -12.34041 -12.24760 -12.01565 -11.88300 -11.68249 -11.61521 -11.48337 -10.80068 -10.67394 -10.64822 -9.74423 -9.58323 -9.48400 -8.24526 -6.39132 0.25114 0.38520 1.33846 1.36609 1.48052 1.59032 1.96240 2.36913 2.74481 2.97575 3.05521 3.44444 3.50063 3.72938 3.83089 3.85665 3.94441 3.99150 4.13516 4.21840 4.24731 4.30425 4.38024 4.53828 4.55851 4.64532 4.69262 4.72979 4.81074 4.85805 4.92962 4.97015 5.00129 5.01770 5.03861 5.14397 5.18906 5.23952 5.35786 5.45300 5.45395 5.53054 5.54167 5.56464 5.76932 6.00282 6.02625 6.04393 6.62794 6.69383 7.21661 7.36846 8.83174 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.005693 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.084231 B = 4916.948905 C = 6058.163059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.102 3.898 5 N -0.589 5.589 6 C 0.263 3.737 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.265 1.265 13 H -0.267 1.267 14 H -0.283 1.283 15 C 0.514 3.486 16 O -0.586 6.586 17 C 0.121 3.879 18 H 0.117 0.883 19 O -0.383 6.383 20 C 0.047 3.953 21 C -0.113 4.113 22 C -0.078 4.078 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.132 4.132 26 C -0.134 4.134 27 C -0.136 4.136 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.093 0.907 37 H -0.006 1.006 38 H 0.027 0.973 39 H 0.267 0.733 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.134 0.866 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 14.908 12.477 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.202 4.202 4 C -0.020 4.020 5 N -0.319 5.319 6 C 0.142 3.858 7 C -0.579 4.579 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.789 3.211 12 H -0.189 1.189 13 H -0.192 1.192 14 H -0.209 1.209 15 C 0.302 3.698 16 O -0.466 6.466 17 C 0.060 3.940 18 H 0.134 0.866 19 O -0.301 6.301 20 C -0.029 4.029 21 C -0.149 4.149 22 C -0.078 4.078 23 C -0.137 4.137 24 C -0.127 4.127 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.137 4.137 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.012 0.988 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.100 0.900 44 H 0.176 0.824 45 H 0.173 0.827 46 H 0.152 0.848 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.104 14.781 12.151 22.641 hybrid contribution 0.598 -1.437 -0.142 1.562 sum -11.506 13.344 12.009 21.324 Atomic orbital electron populations 1.21717 0.91702 1.02616 1.03198 1.21542 0.98033 0.96369 0.97530 1.21945 0.99601 0.95769 1.02872 1.22055 0.78571 1.02149 0.99220 1.48076 1.07288 1.26664 1.49913 1.18763 0.92200 0.83590 0.91259 1.21680 1.44081 0.95389 0.96701 0.92636 1.25827 0.94496 1.02071 0.96476 1.70060 1.44335 1.27872 1.14375 0.85407 0.77875 0.78791 0.79025 1.18931 1.19179 1.20943 1.20560 0.86794 0.82648 0.79798 1.90621 1.16899 1.74982 1.64113 1.20921 0.94558 0.86183 0.92344 0.86603 1.88144 1.51403 1.27743 1.62848 1.23090 1.01643 0.90893 0.87263 1.21230 1.02190 0.92382 0.99146 1.19837 0.98186 0.97348 0.92464 1.21418 0.99314 0.96336 0.96642 1.21526 0.97598 0.94284 0.99339 1.21349 1.00733 1.00696 0.92232 1.21547 0.99371 0.94811 0.99437 1.19899 1.03160 0.96165 0.94441 0.90868 0.91148 0.92303 0.92736 0.91210 0.95765 0.90332 0.90209 0.88871 0.98751 0.95453 0.92374 0.90514 0.85553 0.85684 0.90018 0.82399 0.82743 0.84820 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.19 71.98 0.66 -2.05 16 2 C -0.12 -3.27 3.12 -10.80 -0.03 -3.30 16 3 C -0.14 -3.82 7.82 71.98 0.56 -3.25 16 4 C 0.10 3.44 3.29 86.38 0.28 3.73 16 5 N -0.59 -26.60 1.73 -826.12 -1.43 -28.03 16 6 C 0.26 14.74 5.26 85.63 0.45 15.19 16 7 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.01 0.61 5.46 84.66 0.46 1.07 16 10 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 11 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 15 C 0.51 24.23 5.01 87.66 0.44 24.67 16 16 O -0.59 -34.42 16.19 14.56 0.24 -34.18 16 17 C 0.12 4.29 2.14 29.09 0.06 4.35 16 18 H 0.12 3.43 3.45 -2.39 -0.01 3.42 16 19 O -0.38 -13.37 10.10 -131.39 -1.33 -14.70 16 20 C 0.05 1.00 6.85 71.97 0.49 1.49 16 21 C -0.11 -2.22 6.00 29.85 0.18 -2.05 16 22 C -0.08 -2.06 5.78 -19.84 -0.11 -2.17 16 23 C -0.12 -2.56 9.67 22.31 0.22 -2.35 16 24 C -0.11 -2.45 10.05 22.23 0.22 -2.22 16 25 C -0.13 -3.72 10.05 22.23 0.22 -3.50 16 26 C -0.13 -4.53 8.21 22.32 0.18 -4.35 16 27 C -0.14 -4.48 5.39 -19.86 -0.11 -4.59 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.83 7.97 -2.39 -0.02 1.81 16 32 H 0.07 1.55 6.07 -2.39 -0.01 1.54 16 33 H 0.02 0.80 7.06 -2.39 -0.02 0.78 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.77 8.12 -2.39 -0.02 2.75 16 36 H 0.09 2.69 4.53 -2.39 -0.01 2.68 16 37 H -0.01 -0.37 7.25 -2.38 -0.02 -0.39 16 38 H 0.03 1.56 7.93 -2.39 -0.02 1.54 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 40 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 41 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 46 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 47 H 0.12 4.46 4.60 -2.91 -0.01 4.45 16 Total: -1.00 -81.02 367.16 5.18 -75.84 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.96 Total: 20.80 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.43 Total: -10.67 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.14 Total: -84.42 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -1.09 Total: -48.88 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -81.02 5.18 -75.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749920091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.525 kcal (2) G-P(sol) polarization free energy of solvation -81.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds