Wall clock time and date at job start Tue Mar 31 2020 12:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00181 * 2 1 4 4 O 1.42897 * 109.46977 * 135.00056 * 3 2 1 5 5 C 1.35719 * 116.99967 * 179.97438 * 4 3 2 6 6 C 1.38993 * 119.91014 * 0.30524 * 5 4 3 7 7 C 1.37704 * 120.08772 * 180.25404 * 6 5 4 8 8 C 1.39734 * 119.90660 * 359.44809 * 7 6 5 9 9 C 1.47601 * 120.08501 * 180.30331 * 8 7 6 10 10 O 1.21591 * 119.99937 * 330.47889 * 9 8 7 11 11 N 1.34781 * 120.00127 * 150.48422 * 9 8 7 12 12 C 1.46499 * 120.00005 * 6.36577 * 11 9 8 13 13 C 1.50704 * 109.46728 * 98.79592 * 12 11 9 14 14 H 1.07999 * 120.00264 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99781 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00064 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99897 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47154 * 89.99886 * 17 15 13 19 19 H 1.48497 * 109.47060 * 210.00091 * 17 15 13 20 20 H 1.48500 * 109.47115 * 329.99933 * 17 15 13 21 21 C 1.46503 * 119.99962 * 186.36817 * 11 9 8 22 22 C 1.52998 * 109.47226 * 95.76933 * 21 11 9 23 23 C 1.52996 * 109.47477 * 174.46365 * 22 21 11 24 24 C 1.53009 * 109.46997 * 294.46265 * 22 21 11 25 25 C 1.39734 * 119.82879 * 0.27096 * 8 7 6 26 26 C 1.37699 * 119.90816 * 0.02562 * 25 8 7 27 27 H 1.07998 * 119.99989 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99962 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99962 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47236 * 15.00606 * 3 2 1 31 31 H 1.08993 * 109.47588 * 255.00627 * 3 2 1 32 32 H 1.08004 * 119.95698 * 359.97438 * 6 5 4 33 33 H 1.07991 * 120.04679 * 179.71587 * 7 6 5 34 34 H 1.08997 * 109.46963 * 218.79764 * 12 11 9 35 35 H 1.08997 * 109.47287 * 338.80296 * 12 11 9 36 36 H 0.96994 * 120.00409 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47246 * 215.76993 * 21 11 9 38 38 H 1.09001 * 109.47256 * 335.76927 * 21 11 9 39 39 H 1.09002 * 109.47118 * 54.45497 * 22 21 11 40 40 H 1.09000 * 109.47150 * 59.99399 * 23 22 21 41 41 H 1.09001 * 109.47446 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.46646 * 299.99888 * 23 22 21 43 43 H 1.09002 * 109.46930 * 305.41391 * 24 22 21 44 44 H 1.09001 * 109.46951 * 65.41313 * 24 22 21 45 45 H 1.08993 * 109.47179 * 185.41403 * 24 22 21 46 46 H 1.07997 * 120.04572 * 180.02562 * 25 8 7 47 47 H 1.07999 * 119.95772 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9087 2.3433 1.0780 6 6 3.6519 3.4673 0.3019 7 6 4.4462 4.5857 0.4223 8 6 5.5045 4.5935 1.3347 9 6 6.3543 5.7926 1.4718 10 8 6.5256 6.5285 0.5192 11 7 6.9405 6.0717 2.6530 12 6 6.8500 5.1159 3.7596 13 6 8.1163 4.3016 3.8248 14 1 8.9094 4.4786 3.1134 15 6 8.2629 3.3313 4.7934 16 7 9.3682 2.6209 4.8507 17 14 6.8914 3.0257 6.0242 18 1 5.9641 1.9977 5.4870 19 1 7.4726 2.5475 7.3043 20 1 6.1472 4.2890 6.2599 21 6 7.6682 7.3308 2.8302 22 6 6.7461 8.3660 3.4775 23 6 7.5425 9.6346 3.7888 24 6 5.6043 8.7036 2.5165 25 6 5.7559 3.4636 2.1173 26 6 4.9607 2.3470 1.9865 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1161 0.2661 31 1 2.4755 1.4868 -0.9926 32 1 2.8309 3.4620 -0.3999 33 1 4.2488 5.4570 -0.1843 34 1 6.7169 5.6566 4.6966 35 1 5.9998 4.4531 3.5986 36 1 9.4714 1.9386 5.5322 37 1 8.5333 7.1633 3.4717 38 1 8.0014 7.6977 1.8594 39 1 6.3349 7.9591 4.4014 40 1 7.9536 10.0415 2.8649 41 1 6.8857 10.3720 4.2504 42 1 8.3559 9.3941 4.4734 43 1 6.0172 9.0196 1.5585 44 1 4.9800 7.8222 2.3702 45 1 5.0024 9.5095 2.9363 46 1 6.5727 3.4660 2.8239 47 1 5.1540 1.4734 2.5913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751383037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:27 Heat of formation + Delta-G solvation = -9.199672 kcal Electronic energy + Delta-G solvation = -26969.600344 eV Core-core repulsion = 23312.281696 eV Total energy + Delta-G solvation = -3657.318648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.29681 -39.31374 -37.07651 -35.96518 -34.52749 -34.12041 -32.44094 -30.77592 -29.96038 -28.25719 -26.86288 -26.81320 -25.74976 -22.97420 -22.49733 -22.01132 -20.15207 -20.01465 -18.84079 -18.01042 -17.11036 -16.78194 -16.23134 -15.92934 -15.63686 -14.78730 -14.63891 -14.42995 -14.31641 -14.03465 -13.79092 -13.47507 -13.27649 -13.08579 -12.77527 -12.63466 -12.41219 -12.35864 -12.20411 -11.95591 -11.55054 -11.44265 -11.23216 -11.10422 -10.96746 -10.92519 -10.73628 -10.59754 -10.29753 -10.21039 -10.04672 -9.77595 -9.68389 -9.12342 -8.89900 -8.52817 -7.95985 -7.68721 -6.34238 -4.37450 1.39746 1.70273 1.78798 3.12014 3.20765 3.23105 3.33558 3.41306 3.82145 4.16446 4.25397 4.58014 4.76398 4.94085 4.97519 5.09676 5.14101 5.17784 5.21883 5.25348 5.29283 5.44446 5.50772 5.69346 5.78507 5.86146 5.95856 5.98318 6.09433 6.12144 6.21333 6.24530 6.30621 6.31749 6.33771 6.39841 6.43427 6.52526 6.57050 6.60379 6.69055 6.73679 6.88452 7.15280 7.25625 7.39634 7.54601 8.06286 8.35837 8.74392 8.91661 9.23220 10.77063 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.004420 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.596187 B = 6333.491411 C = 8174.129040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C 0.085 3.915 4 O -0.311 6.311 5 C 0.143 3.857 6 C -0.232 4.232 7 C -0.028 4.028 8 C -0.169 4.169 9 C 0.564 3.436 10 O -0.566 6.566 11 N -0.582 5.582 12 C 0.178 3.822 13 C -0.546 4.546 14 H 0.083 0.917 15 C 0.082 3.918 16 N -0.878 5.878 17 Si 0.858 3.142 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.260 1.260 21 C 0.123 3.877 22 C -0.113 4.113 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.064 4.064 26 C -0.167 4.167 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.031 0.969 35 H 0.057 0.943 36 H 0.270 0.730 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.202 0.798 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.888 1.624 -5.207 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.010 3.990 4 O -0.225 6.225 5 C 0.098 3.902 6 C -0.251 4.251 7 C -0.048 4.048 8 C -0.172 4.172 9 C 0.354 3.646 10 O -0.448 6.448 11 N -0.310 5.310 12 C 0.058 3.942 13 C -0.584 4.584 14 H 0.102 0.898 15 C -0.124 4.124 16 N -0.514 5.514 17 Si 0.683 3.317 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.184 1.184 21 C 0.000 4.000 22 C -0.133 4.133 23 C -0.199 4.199 24 C -0.195 4.195 25 C -0.081 4.081 26 C -0.186 4.186 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.218 0.782 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.667 1.671 -5.468 14.815 hybrid contribution -0.726 -0.321 0.631 1.014 sum -14.393 1.350 -4.837 15.244 Atomic orbital electron populations 1.23861 0.95421 1.02467 0.99540 1.22714 0.95665 0.97963 1.00674 1.21815 0.88106 0.96612 0.92501 1.86050 1.41943 1.36193 1.58282 1.19316 0.90745 0.85433 0.94726 1.20993 1.04492 0.94510 1.05110 1.20905 0.92159 0.97191 0.94499 1.19894 0.99743 0.96010 1.01541 1.18093 0.79486 0.84426 0.82601 1.90671 1.63946 1.51745 1.38392 1.47684 1.51324 1.19232 1.12771 1.20684 0.98731 0.89206 0.85625 1.21353 1.01846 1.18418 1.16790 0.89850 1.24908 0.95566 0.95240 0.96638 1.69876 1.25584 1.21857 1.34070 0.87105 0.82818 0.79908 0.81832 1.19018 1.20489 1.18441 1.21428 0.94160 0.82976 1.01484 1.21508 0.96731 0.95747 0.99300 1.21742 0.99924 0.96882 1.01360 1.21757 0.97895 1.00534 0.99295 1.23304 0.99131 0.89888 0.95750 1.20542 0.96250 1.00506 1.01261 0.87527 0.88275 0.86218 0.91483 0.90946 0.85648 0.85350 0.95129 0.92557 0.92002 0.90120 0.90290 0.91180 0.92721 0.92972 0.92509 0.92375 0.93170 0.93703 0.78184 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 14.31 29.01 0.42 -0.90 16 2 C -0.15 -1.41 9.89 -36.03 -0.36 -1.77 16 3 C 0.08 0.91 5.15 36.00 0.19 1.09 16 4 O -0.31 -4.58 10.11 -18.86 -0.19 -4.77 16 5 C 0.14 2.34 6.70 -39.02 -0.26 2.08 16 6 C -0.23 -3.48 9.01 -39.50 -0.36 -3.84 16 7 C -0.03 -0.48 9.59 -39.22 -0.38 -0.86 16 8 C -0.17 -3.33 5.60 -104.96 -0.59 -3.92 16 9 C 0.56 11.96 6.11 -12.44 -0.08 11.88 16 10 O -0.57 -12.72 15.69 5.29 0.08 -12.64 16 11 N -0.58 -12.04 2.28 -176.26 -0.40 -12.44 16 12 C 0.18 3.90 3.74 -5.19 -0.02 3.88 16 13 C -0.55 -13.87 8.10 -34.44 -0.28 -14.15 16 14 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 15 C 0.08 2.13 5.35 -17.82 -0.10 2.03 16 16 N -0.88 -24.50 13.96 55.43 0.77 -23.73 16 17 Si 0.86 19.02 27.33 -169.99 -4.65 14.37 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 21 C 0.12 2.25 4.97 -4.04 -0.02 2.23 16 22 C -0.11 -1.76 3.12 -90.62 -0.28 -2.04 16 23 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 24 C -0.14 -2.11 8.27 37.16 0.31 -1.80 16 25 C -0.06 -1.28 7.48 -39.22 -0.29 -1.58 16 26 C -0.17 -3.06 9.97 -39.50 -0.39 -3.45 16 27 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 28 H 0.10 0.66 7.90 -52.49 -0.41 0.24 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.07 0.65 7.36 -51.93 -0.38 0.26 16 31 H 0.07 0.70 7.66 -51.93 -0.40 0.31 16 32 H 0.13 1.47 6.28 -52.48 -0.33 1.14 16 33 H 0.13 2.02 7.91 -52.49 -0.42 1.60 16 34 H 0.03 0.66 7.01 -51.93 -0.36 0.30 16 35 H 0.06 1.22 3.40 -52.43 -0.18 1.05 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.08 1.51 8.11 -51.93 -0.42 1.08 16 38 H 0.08 1.49 7.19 -51.93 -0.37 1.11 16 39 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.85 7.02 -51.93 -0.36 0.48 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.20 4.49 2.90 -52.49 -0.15 4.34 16 47 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -28.90 378.63 -8.00 -36.91 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.18 Total: 9.16 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.15 Total: -12.56 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.37 Total: -36.18 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.11 Total: -17.41 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.65 Total: 14.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.90 -8.00 -36.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751383037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.706 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds