Wall clock time and date at job start Tue Mar 31 2020 12:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00181 * 2 1 4 4 O 1.42897 * 109.46977 * 135.00056 * 3 2 1 5 5 C 1.35719 * 116.99967 * 179.97438 * 4 3 2 6 6 C 1.38993 * 119.91014 * 0.30524 * 5 4 3 7 7 C 1.37704 * 120.08772 * 180.25404 * 6 5 4 8 8 C 1.39734 * 119.90660 * 359.44809 * 7 6 5 9 9 C 1.47601 * 120.08501 * 180.30331 * 8 7 6 10 10 O 1.21591 * 119.99937 * 330.47889 * 9 8 7 11 11 N 1.34781 * 120.00127 * 150.48422 * 9 8 7 12 12 C 1.46499 * 120.00005 * 6.36577 * 11 9 8 13 13 C 1.50704 * 109.46728 * 98.79592 * 12 11 9 14 14 H 1.07999 * 120.00264 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99781 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00064 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99897 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47154 * 89.99886 * 17 15 13 19 19 H 1.48497 * 109.47060 * 210.00091 * 17 15 13 20 20 H 1.48500 * 109.47115 * 329.99933 * 17 15 13 21 21 C 1.46503 * 119.99962 * 186.36817 * 11 9 8 22 22 C 1.52998 * 109.47226 * 95.76933 * 21 11 9 23 23 C 1.52996 * 109.47477 * 174.46365 * 22 21 11 24 24 C 1.53009 * 109.46997 * 294.46265 * 22 21 11 25 25 C 1.39734 * 119.82879 * 0.27096 * 8 7 6 26 26 C 1.37699 * 119.90816 * 0.02562 * 25 8 7 27 27 H 1.07998 * 119.99989 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99962 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99962 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47236 * 15.00606 * 3 2 1 31 31 H 1.08993 * 109.47588 * 255.00627 * 3 2 1 32 32 H 1.08004 * 119.95698 * 359.97438 * 6 5 4 33 33 H 1.07991 * 120.04679 * 179.71587 * 7 6 5 34 34 H 1.08997 * 109.46963 * 218.79764 * 12 11 9 35 35 H 1.08997 * 109.47287 * 338.80296 * 12 11 9 36 36 H 0.96994 * 120.00409 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47246 * 215.76993 * 21 11 9 38 38 H 1.09001 * 109.47256 * 335.76927 * 21 11 9 39 39 H 1.09002 * 109.47118 * 54.45497 * 22 21 11 40 40 H 1.09000 * 109.47150 * 59.99399 * 23 22 21 41 41 H 1.09001 * 109.47446 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.46646 * 299.99888 * 23 22 21 43 43 H 1.09002 * 109.46930 * 305.41391 * 24 22 21 44 44 H 1.09001 * 109.46951 * 65.41313 * 24 22 21 45 45 H 1.08993 * 109.47179 * 185.41403 * 24 22 21 46 46 H 1.07997 * 120.04572 * 180.02562 * 25 8 7 47 47 H 1.07999 * 119.95772 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9087 2.3433 1.0780 6 6 3.6519 3.4673 0.3019 7 6 4.4462 4.5857 0.4223 8 6 5.5045 4.5935 1.3347 9 6 6.3543 5.7926 1.4718 10 8 6.5256 6.5285 0.5192 11 7 6.9405 6.0717 2.6530 12 6 6.8500 5.1159 3.7596 13 6 8.1163 4.3016 3.8248 14 1 8.9094 4.4786 3.1134 15 6 8.2629 3.3313 4.7934 16 7 9.3682 2.6209 4.8507 17 14 6.8914 3.0257 6.0242 18 1 5.9641 1.9977 5.4870 19 1 7.4726 2.5475 7.3043 20 1 6.1472 4.2890 6.2599 21 6 7.6682 7.3308 2.8302 22 6 6.7461 8.3660 3.4775 23 6 7.5425 9.6346 3.7888 24 6 5.6043 8.7036 2.5165 25 6 5.7559 3.4636 2.1173 26 6 4.9607 2.3470 1.9865 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3856 2.1161 0.2661 31 1 2.4755 1.4868 -0.9926 32 1 2.8309 3.4620 -0.3999 33 1 4.2488 5.4570 -0.1843 34 1 6.7169 5.6566 4.6966 35 1 5.9998 4.4531 3.5986 36 1 9.4714 1.9386 5.5322 37 1 8.5333 7.1633 3.4717 38 1 8.0014 7.6977 1.8594 39 1 6.3349 7.9591 4.4014 40 1 7.9536 10.0415 2.8649 41 1 6.8857 10.3720 4.2504 42 1 8.3559 9.3941 4.4734 43 1 6.0172 9.0196 1.5585 44 1 4.9800 7.8222 2.3702 45 1 5.0024 9.5095 2.9363 46 1 6.5727 3.4660 2.8239 47 1 5.1540 1.4734 2.5913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751383037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:26 Heat of formation + Delta-G solvation = -24.080484 kcal Electronic energy + Delta-G solvation = -26970.245624 eV Core-core repulsion = 23312.281696 eV Total energy + Delta-G solvation = -3657.963928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71480 -40.67086 -38.35914 -37.53868 -35.96332 -34.96839 -34.32208 -32.15327 -31.29644 -30.07712 -28.03896 -27.75253 -27.10138 -24.74676 -23.85038 -23.42436 -21.34840 -20.87035 -20.36401 -19.24348 -19.05514 -18.24129 -17.53253 -17.14148 -16.85805 -16.40913 -16.10543 -15.77355 -15.63362 -15.38251 -15.18601 -14.76668 -14.58785 -14.53331 -14.13025 -13.88230 -13.78950 -13.64207 -13.45422 -13.16051 -12.97613 -12.75375 -12.66100 -12.46422 -12.40142 -12.16930 -11.91976 -11.90513 -11.81550 -11.72304 -11.55458 -11.49004 -10.88235 -10.73890 -10.43509 -9.96701 -9.47388 -9.19073 -8.36452 -6.44483 -0.01791 0.33373 1.12733 1.36813 1.38951 1.47357 1.85986 2.24862 2.28828 2.33671 2.78952 2.96967 3.65545 3.74088 3.85172 3.95174 3.97798 4.04811 4.09946 4.18793 4.22701 4.35374 4.41641 4.55308 4.58737 4.65341 4.68559 4.72856 4.78859 4.84965 4.94995 4.95744 5.00943 5.03919 5.06383 5.18517 5.19911 5.22299 5.34520 5.41058 5.44815 5.45800 5.61871 5.64012 5.71490 5.77600 6.12435 6.36370 6.57953 6.65766 7.16232 7.30268 8.78955 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.004420 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.596187 B = 6333.491411 C = 8174.129040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.179 4.179 3 C 0.075 3.925 4 O -0.322 6.322 5 C 0.154 3.846 6 C -0.214 4.214 7 C -0.024 4.024 8 C -0.193 4.193 9 C 0.559 3.441 10 O -0.586 6.586 11 N -0.586 5.586 12 C 0.189 3.811 13 C -0.542 4.542 14 H 0.034 0.966 15 C 0.034 3.966 16 N -0.929 5.929 17 Si 0.918 3.082 18 H -0.253 1.253 19 H -0.279 1.279 20 H -0.240 1.240 21 C 0.118 3.882 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.081 4.081 26 C -0.180 4.180 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.272 0.728 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.030 0.970 45 H 0.071 0.929 46 H 0.175 0.825 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.726 2.031 -5.378 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.197 4.197 3 C 0.001 3.999 4 O -0.235 6.235 5 C 0.108 3.892 6 C -0.232 4.232 7 C -0.043 4.043 8 C -0.196 4.196 9 C 0.350 3.650 10 O -0.469 6.469 11 N -0.315 5.315 12 C 0.068 3.932 13 C -0.580 4.580 14 H 0.052 0.948 15 C -0.167 4.167 16 N -0.567 5.567 17 Si 0.740 3.260 18 H -0.177 1.177 19 H -0.204 1.204 20 H -0.163 1.163 21 C -0.004 4.004 22 C -0.127 4.127 23 C -0.193 4.193 24 C -0.187 4.187 25 C -0.099 4.099 26 C -0.199 4.199 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.192 0.808 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.520 2.093 -5.648 18.526 hybrid contribution 0.406 -0.531 0.523 0.848 sum -17.114 1.562 -5.125 17.933 Atomic orbital electron populations 1.24123 0.94805 1.03859 0.96475 1.22686 0.96302 0.97265 1.03480 1.22176 0.87378 0.98154 0.92172 1.86058 1.42629 1.35426 1.59413 1.19279 0.90011 0.86250 0.93664 1.21341 1.04515 0.92834 1.04548 1.21101 0.91281 0.98381 0.93570 1.19900 1.01133 0.95300 1.03295 1.18425 0.79506 0.84792 0.82276 1.90638 1.64890 1.52653 1.38768 1.47762 1.51438 1.19692 1.12565 1.20495 0.97235 0.89196 0.86283 1.21356 1.01951 1.19079 1.15606 0.94755 1.25669 0.97834 0.94675 0.98506 1.70017 1.28108 1.23090 1.35452 0.86141 0.80000 0.80890 0.78981 1.17725 1.20447 1.16303 1.21566 0.94646 0.83140 1.01070 1.21462 0.96496 0.95976 0.98746 1.21708 1.00024 0.95782 1.01819 1.21683 0.97645 1.00500 0.98902 1.22914 0.99351 0.91180 0.96412 1.20530 0.97137 0.99877 1.02348 0.85992 0.87023 0.86629 0.89767 0.89733 0.81556 0.83991 0.94417 0.91311 0.91866 0.91281 0.91227 0.91459 0.92330 0.90767 0.92342 0.93341 0.95098 0.91016 0.80831 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 14.31 67.78 0.97 -0.81 16 2 C -0.18 -2.83 9.89 25.64 0.25 -2.58 16 3 C 0.08 1.36 5.15 71.23 0.37 1.73 16 4 O -0.32 -8.69 10.11 -90.41 -0.91 -9.60 16 5 C 0.15 4.71 6.70 22.63 0.15 4.86 16 6 C -0.21 -5.75 9.01 22.32 0.20 -5.55 16 7 C -0.02 -0.79 9.59 22.51 0.22 -0.57 16 8 C -0.19 -7.65 5.60 -20.08 -0.11 -7.76 16 9 C 0.56 24.27 6.11 86.71 0.53 24.80 16 10 O -0.59 -26.89 15.69 -4.00 -0.06 -26.96 16 11 N -0.59 -25.07 2.28 -829.82 -1.89 -26.97 16 12 C 0.19 8.47 3.74 85.63 0.32 8.79 16 13 C -0.54 -28.92 8.10 25.60 0.21 -28.71 16 14 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 15 C 0.03 1.84 5.35 84.66 0.45 2.29 16 16 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16 17 Si 0.92 39.36 27.33 68.60 1.88 41.24 16 18 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 21 C 0.12 4.49 4.97 86.38 0.43 4.92 16 22 C -0.11 -3.25 3.12 -10.79 -0.03 -3.29 16 23 C -0.14 -3.23 9.19 71.98 0.66 -2.57 16 24 C -0.13 -3.84 8.27 71.99 0.60 -3.24 16 25 C -0.08 -3.32 7.48 22.50 0.17 -3.15 16 26 C -0.18 -6.53 9.97 22.32 0.22 -6.31 16 27 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 28 H 0.11 1.00 7.90 -2.91 -0.02 0.98 16 29 H 0.12 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.08 1.24 7.36 -2.39 -0.02 1.23 16 31 H 0.08 1.32 7.66 -2.39 -0.02 1.30 16 32 H 0.17 3.08 6.28 -2.91 -0.02 3.06 16 33 H 0.14 4.16 7.91 -2.92 -0.02 4.13 16 34 H 0.04 1.63 7.01 -2.39 -0.02 1.61 16 35 H 0.07 3.01 3.40 -2.86 -0.01 3.00 16 36 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.07 2.72 8.11 -2.39 -0.02 2.70 16 38 H 0.07 2.74 7.19 -2.39 -0.02 2.72 16 39 H 0.07 2.09 7.96 -2.39 -0.02 2.07 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.03 1.01 7.02 -2.39 -0.02 0.99 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.18 8.09 2.90 -2.91 -0.01 8.08 16 47 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -65.91 378.63 5.80 -60.11 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.90 Total: 33.18 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 5.60 Total: -17.15 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.59 Total: -80.82 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.98 Total: -36.56 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.88 Total: 41.24 kcal Total: -65.91 5.80 -60.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751383037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.028 kcal (2) G-P(sol) polarization free energy of solvation -65.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds