Wall clock time and date at job start Tue Mar 31 2020 12:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46846 * 2 1 4 4 C 1.53001 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.50876 * 54.90048 * 4 3 2 6 6 C 1.53295 * 109.51435 * 174.99939 * 4 3 2 7 7 N 1.47145 * 108.38578 * 172.27695 * 6 4 3 8 8 C 1.34776 * 120.98543 * 129.44292 * 7 6 4 9 9 O 1.21286 * 119.99711 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00582 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47348 * 179.97438 * 10 8 7 12 12 C 1.37634 * 120.12941 * 265.02178 * 11 10 8 13 13 C 1.38614 * 120.24814 * 180.02562 * 12 11 10 14 14 C 1.38657 * 120.50182 * 359.97438 * 13 12 11 15 15 C 1.37590 * 120.24819 * 359.67035 * 14 13 12 16 16 C 1.40703 * 120.12712 * 84.99873 * 11 10 8 17 17 C 1.41401 * 120.24376 * 0.02562 * 16 11 10 18 18 H 1.07994 * 120.00044 * 334.89345 * 17 16 11 19 19 C 1.39940 * 119.99865 * 154.88785 * 17 16 11 20 20 N 1.30825 * 120.00304 * 344.79011 * 19 17 16 21 21 Si 1.86798 * 119.99995 * 165.06357 * 19 17 16 22 22 H 1.48498 * 109.47370 * 179.72770 * 21 19 17 23 23 H 1.48497 * 109.47191 * 299.72683 * 21 19 17 24 24 H 1.48503 * 109.47029 * 59.72300 * 21 19 17 25 25 C 1.47154 * 118.03722 * 309.72084 * 7 6 4 26 26 C 1.52875 * 108.60787 * 50.22355 * 25 7 6 27 27 O 1.42959 * 109.55420 * 294.77580 * 4 3 2 28 28 H 1.09003 * 109.46654 * 60.00529 * 1 2 3 29 29 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47652 * 300.00042 * 1 2 3 31 31 H 1.09002 * 109.47101 * 239.99811 * 2 1 3 32 32 H 1.09004 * 109.46736 * 120.00017 * 2 1 3 33 33 H 1.09002 * 109.47425 * 60.00009 * 3 2 1 34 34 H 1.08997 * 109.47265 * 299.99910 * 3 2 1 35 35 H 1.09001 * 109.67907 * 52.55793 * 6 4 3 36 36 H 1.09000 * 109.68376 * 292.00227 * 6 4 3 37 37 H 1.08998 * 109.47127 * 60.00053 * 10 8 7 38 38 H 1.09001 * 109.47061 * 299.99740 * 10 8 7 39 39 H 1.07997 * 119.87824 * 359.97438 * 12 11 10 40 40 H 1.08007 * 119.75137 * 179.97438 * 13 12 11 41 41 H 1.08008 * 119.87251 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.13122 * 180.29747 * 15 14 13 43 43 H 0.96998 * 120.00514 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.68293 * 170.00648 * 25 7 6 45 45 H 1.09000 * 109.67768 * 290.55547 * 25 7 6 46 46 H 1.09004 * 109.58116 * 187.92597 * 26 25 7 47 47 H 1.09000 * 109.41171 * 67.84564 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9344 0.8516 -0.8397 6 6 4.0821 2.8819 -0.1253 7 7 5.5412 2.8737 0.0644 8 6 6.3592 3.4804 -0.8184 9 8 5.8949 4.0446 -1.7865 10 6 7.8504 3.4579 -0.6028 11 6 8.5314 4.2006 -1.7233 12 6 9.0102 3.5146 -2.8162 13 6 9.6373 4.1953 -3.8481 14 6 9.7894 5.5724 -3.7926 15 6 9.3120 6.2795 -2.7132 16 6 8.6797 5.5982 -1.6565 17 6 8.1918 6.3136 -0.5387 18 1 7.3821 5.9086 0.0501 19 6 8.7582 7.5463 -0.1953 20 7 9.9105 7.9010 -0.7032 21 14 7.8728 8.6821 0.9944 22 1 8.6788 9.9127 1.1967 23 1 6.5455 9.0458 0.4365 24 1 7.6899 7.9905 2.2958 25 6 6.0816 2.1781 1.2432 26 6 5.4718 0.7776 1.3053 27 8 4.0480 0.8782 1.2241 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6162 3.5053 0.6379 36 1 3.8427 3.2715 -1.1148 37 1 8.1997 2.4255 -0.5868 38 1 8.0874 3.9364 0.3475 39 1 8.8975 2.4419 -2.8697 40 1 10.0104 3.6489 -4.7018 41 1 10.2801 6.0925 -4.6022 42 1 9.4273 7.3527 -2.6742 43 1 10.3033 8.7552 -0.4649 44 1 7.1658 2.1018 1.1596 45 1 5.8205 2.7295 2.1465 46 1 5.7500 0.2993 2.2445 47 1 5.8430 0.1835 0.4702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777411148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:38 Heat of formation + Delta-G solvation = -75.776484 kcal Electronic energy + Delta-G solvation = -26931.879294 eV Core-core repulsion = 23271.673659 eV Total energy + Delta-G solvation = -3660.205635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.17401 -38.46548 -37.18430 -35.33103 -34.33417 -33.61313 -32.07920 -31.23025 -29.43494 -28.41181 -27.42631 -25.72993 -24.78370 -23.47369 -21.89033 -21.10399 -20.90305 -19.96289 -18.57489 -17.15654 -16.84661 -16.80363 -15.73801 -15.51745 -15.26874 -15.08292 -14.75996 -14.65558 -14.42425 -13.75424 -13.71384 -13.48848 -13.05628 -12.96167 -12.77493 -12.55957 -12.28074 -12.07154 -11.67743 -11.58280 -11.54675 -11.27067 -11.17766 -11.14951 -11.04695 -10.95898 -10.85323 -10.67777 -10.56758 -10.38879 -10.09338 -9.48360 -9.35193 -9.16889 -9.14411 -8.30960 -7.29948 -7.28005 -6.71326 -4.33534 2.79336 2.94804 3.06589 3.10134 3.25513 3.28155 3.29739 3.60979 3.94528 4.47954 4.67165 4.76562 4.83419 4.88616 4.95271 5.04914 5.10921 5.19459 5.32741 5.43274 5.45128 5.53046 5.64894 5.66232 5.73348 5.75199 5.82200 5.85753 5.94646 6.00868 6.05815 6.11061 6.16374 6.28387 6.41457 6.52146 6.68218 6.81164 7.04646 7.09694 7.31733 7.44228 7.63029 7.74078 7.94205 8.08625 8.14881 8.32846 8.66046 8.77563 8.93066 9.02996 10.21928 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.003565 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.994222 B = 7852.212728 C = 8816.640403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.079 3.921 5 H 0.061 0.939 6 C 0.084 3.916 7 N -0.630 5.630 8 C 0.520 3.480 9 O -0.517 6.517 10 C -0.068 4.068 11 C -0.183 4.183 12 C -0.081 4.081 13 C -0.240 4.240 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.128 3.872 17 C -0.455 4.455 18 H 0.072 0.928 19 C 0.076 3.924 20 N -0.796 5.796 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.264 1.264 24 H -0.266 1.266 25 C 0.074 3.926 26 C 0.049 3.951 27 O -0.377 6.377 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.280 0.720 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -12.409 5.888 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.148 4.148 4 C 0.021 3.979 5 H 0.079 0.921 6 C -0.039 4.039 7 N -0.367 5.367 8 C 0.309 3.691 9 O -0.391 6.391 10 C -0.108 4.108 11 C -0.185 4.185 12 C -0.100 4.100 13 C -0.259 4.259 14 C -0.125 4.125 15 C -0.179 4.179 16 C 0.126 3.874 17 C -0.485 4.485 18 H 0.091 0.909 19 C -0.141 4.141 20 N -0.422 5.422 21 Si 0.729 3.271 22 H -0.203 1.203 23 H -0.189 1.189 24 H -0.191 1.191 25 C -0.049 4.049 26 C -0.029 4.029 27 O -0.296 6.296 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.796 -11.932 5.499 17.005 hybrid contribution -0.071 0.676 0.416 0.796 sum -10.867 -11.257 5.915 16.727 Atomic orbital electron populations 1.21781 0.95940 1.01494 1.01769 1.21463 0.95541 0.96409 1.02423 1.21603 0.92129 0.97974 1.03125 1.22531 0.94834 0.93371 0.87213 0.92072 1.22175 0.81215 0.96597 1.03947 1.48290 1.06095 1.56692 1.25662 1.21313 0.89638 0.76767 0.81357 1.90673 1.77254 1.42024 1.29123 1.20281 0.89283 1.00064 1.01129 1.19048 1.09114 0.93642 0.96669 1.20281 0.98777 0.96729 0.94173 1.20305 1.11010 0.94515 1.00073 1.20683 1.00244 0.94008 0.97613 1.21348 1.03503 0.99765 0.93247 1.17339 0.88670 0.89760 0.91642 1.19440 1.16058 1.02300 1.10676 0.90950 1.25877 0.93869 0.98033 0.96296 1.69802 1.13586 1.21149 1.37636 0.86437 0.80541 0.79402 0.80768 1.20294 1.18904 1.19072 1.22287 1.00204 0.93338 0.89107 1.22889 0.81430 0.95888 1.02670 1.87919 1.20736 1.82860 1.38073 0.92813 0.92871 0.92728 0.92260 0.91243 0.90853 0.90278 0.91308 0.88346 0.90724 0.88564 0.89860 0.89676 0.89573 0.86283 0.90912 0.88394 0.90816 0.87794 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.05 5.83 -26.73 -0.16 -1.21 16 3 C -0.11 -1.06 4.93 -26.73 -0.13 -1.19 16 4 C 0.08 0.92 2.77 -26.58 -0.07 0.85 16 5 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 6 C 0.08 1.18 5.93 -3.54 -0.02 1.16 16 7 N -0.63 -9.92 3.03 -172.53 -0.52 -10.45 16 8 C 0.52 10.41 7.35 -10.99 -0.08 10.33 16 9 O -0.52 -12.59 15.50 5.55 0.09 -12.50 16 10 C -0.07 -1.34 3.55 -29.04 -0.10 -1.45 16 11 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 12 C -0.08 -1.89 9.66 -39.66 -0.38 -2.28 16 13 C -0.24 -5.64 10.05 -39.29 -0.39 -6.03 16 14 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 15 C -0.16 -4.30 8.69 -38.88 -0.34 -4.64 16 16 C 0.13 3.46 5.57 -106.82 -0.60 2.87 16 17 C -0.45 -12.09 8.17 -37.74 -0.31 -12.40 16 18 H 0.07 1.88 6.64 -52.49 -0.35 1.53 16 19 C 0.08 1.94 5.19 -17.34 -0.09 1.85 16 20 N -0.80 -20.66 10.86 55.55 0.60 -20.05 16 21 Si 0.90 19.06 29.58 -169.99 -5.03 14.03 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 C 0.07 0.89 6.51 -3.75 -0.02 0.86 16 26 C 0.05 0.50 6.97 37.09 0.26 0.75 16 27 O -0.38 -4.44 9.94 -35.23 -0.35 -4.79 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.54 7.08 -51.93 -0.37 1.17 16 37 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 38 H 0.10 1.88 6.93 -51.93 -0.36 1.52 16 39 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 41 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 42 H 0.12 3.30 6.13 -52.48 -0.32 2.98 16 43 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 44 H 0.10 1.07 6.05 -51.92 -0.31 0.75 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -31.17 376.03 -10.04 -41.21 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.56 Total: 6.11 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.93 Total: -19.23 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: 0.08 Total: -30.50 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.26 Total: -17.29 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.17 -10.04 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777411148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.566 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds