Wall clock time and date at job start Tue Mar 31 2020 12:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46846 * 2 1 4 4 C 1.53001 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.50876 * 54.90048 * 4 3 2 6 6 C 1.53295 * 109.51435 * 174.99939 * 4 3 2 7 7 N 1.47145 * 108.38578 * 172.27695 * 6 4 3 8 8 C 1.34776 * 120.98543 * 129.44292 * 7 6 4 9 9 O 1.21286 * 119.99711 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00582 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47348 * 179.97438 * 10 8 7 12 12 C 1.37634 * 120.12941 * 265.02178 * 11 10 8 13 13 C 1.38614 * 120.24814 * 180.02562 * 12 11 10 14 14 C 1.38657 * 120.50182 * 359.97438 * 13 12 11 15 15 C 1.37590 * 120.24819 * 359.67035 * 14 13 12 16 16 C 1.40703 * 120.12712 * 84.99873 * 11 10 8 17 17 C 1.41401 * 120.24376 * 0.02562 * 16 11 10 18 18 H 1.07994 * 120.00044 * 334.89345 * 17 16 11 19 19 C 1.39940 * 119.99865 * 154.88785 * 17 16 11 20 20 N 1.30825 * 120.00304 * 344.79011 * 19 17 16 21 21 Si 1.86798 * 119.99995 * 165.06357 * 19 17 16 22 22 H 1.48498 * 109.47370 * 179.72770 * 21 19 17 23 23 H 1.48497 * 109.47191 * 299.72683 * 21 19 17 24 24 H 1.48503 * 109.47029 * 59.72300 * 21 19 17 25 25 C 1.47154 * 118.03722 * 309.72084 * 7 6 4 26 26 C 1.52875 * 108.60787 * 50.22355 * 25 7 6 27 27 O 1.42959 * 109.55420 * 294.77580 * 4 3 2 28 28 H 1.09003 * 109.46654 * 60.00529 * 1 2 3 29 29 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47652 * 300.00042 * 1 2 3 31 31 H 1.09002 * 109.47101 * 239.99811 * 2 1 3 32 32 H 1.09004 * 109.46736 * 120.00017 * 2 1 3 33 33 H 1.09002 * 109.47425 * 60.00009 * 3 2 1 34 34 H 1.08997 * 109.47265 * 299.99910 * 3 2 1 35 35 H 1.09001 * 109.67907 * 52.55793 * 6 4 3 36 36 H 1.09000 * 109.68376 * 292.00227 * 6 4 3 37 37 H 1.08998 * 109.47127 * 60.00053 * 10 8 7 38 38 H 1.09001 * 109.47061 * 299.99740 * 10 8 7 39 39 H 1.07997 * 119.87824 * 359.97438 * 12 11 10 40 40 H 1.08007 * 119.75137 * 179.97438 * 13 12 11 41 41 H 1.08008 * 119.87251 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.13122 * 180.29747 * 15 14 13 43 43 H 0.96998 * 120.00514 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.68293 * 170.00648 * 25 7 6 45 45 H 1.09000 * 109.67768 * 290.55547 * 25 7 6 46 46 H 1.09004 * 109.58116 * 187.92597 * 26 25 7 47 47 H 1.09000 * 109.41171 * 67.84564 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9344 0.8516 -0.8397 6 6 4.0821 2.8819 -0.1253 7 7 5.5412 2.8737 0.0644 8 6 6.3592 3.4804 -0.8184 9 8 5.8949 4.0446 -1.7865 10 6 7.8504 3.4579 -0.6028 11 6 8.5314 4.2006 -1.7233 12 6 9.0102 3.5146 -2.8162 13 6 9.6373 4.1953 -3.8481 14 6 9.7894 5.5724 -3.7926 15 6 9.3120 6.2795 -2.7132 16 6 8.6797 5.5982 -1.6565 17 6 8.1918 6.3136 -0.5387 18 1 7.3821 5.9086 0.0501 19 6 8.7582 7.5463 -0.1953 20 7 9.9105 7.9010 -0.7032 21 14 7.8728 8.6821 0.9944 22 1 8.6788 9.9127 1.1967 23 1 6.5455 9.0458 0.4365 24 1 7.6899 7.9905 2.2958 25 6 6.0816 2.1781 1.2432 26 6 5.4718 0.7776 1.3053 27 8 4.0480 0.8782 1.2241 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6162 3.5053 0.6379 36 1 3.8427 3.2715 -1.1148 37 1 8.1997 2.4255 -0.5868 38 1 8.0874 3.9364 0.3475 39 1 8.8975 2.4419 -2.8697 40 1 10.0104 3.6489 -4.7018 41 1 10.2801 6.0925 -4.6022 42 1 9.4273 7.3527 -2.6742 43 1 10.3033 8.7552 -0.4649 44 1 7.1658 2.1018 1.1596 45 1 5.8205 2.7295 2.1465 46 1 5.7500 0.2993 2.2445 47 1 5.8430 0.1835 0.4702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777411148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:36 Heat of formation + Delta-G solvation = -92.565671 kcal Electronic energy + Delta-G solvation = -26932.607327 eV Core-core repulsion = 23271.673659 eV Total energy + Delta-G solvation = -3660.933669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42170 -39.87505 -38.88077 -36.23043 -35.52438 -35.47597 -33.59063 -32.34567 -31.34844 -29.53091 -28.79420 -27.25420 -26.36531 -24.40513 -22.98831 -22.79327 -21.92429 -21.58656 -19.97643 -19.06299 -18.20850 -17.75159 -17.32533 -16.90823 -16.60487 -16.19933 -16.01774 -15.86291 -15.47587 -15.37306 -15.30616 -14.77798 -14.40847 -14.24350 -13.94916 -13.84900 -13.57143 -13.38019 -13.06348 -13.01001 -12.85110 -12.76179 -12.69956 -12.51018 -12.41058 -12.12906 -12.05645 -11.92896 -11.60436 -11.45274 -11.34688 -11.21824 -11.12576 -11.05170 -10.72091 -9.53928 -9.24180 -9.17678 -8.60008 -6.31533 0.97782 1.11889 1.33787 1.44070 1.52496 1.73065 1.97239 2.18118 2.74523 2.77164 3.55277 3.65238 3.89353 3.93198 4.03923 4.05692 4.14150 4.23351 4.29976 4.35290 4.36287 4.43699 4.56329 4.58997 4.66750 4.69127 4.72480 4.75253 4.79819 4.89044 4.91022 4.97704 5.04368 5.07313 5.17513 5.27101 5.36401 5.36767 5.48100 5.49846 5.53777 5.75372 6.02030 6.14663 6.15946 6.20539 6.37786 6.40438 6.72354 6.97596 7.09724 7.28066 8.35410 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.003565 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.994222 B = 7852.212728 C = 8816.640403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.108 4.108 4 C 0.089 3.911 5 H 0.056 0.944 6 C 0.080 3.920 7 N -0.624 5.624 8 C 0.519 3.481 9 O -0.573 6.573 10 C -0.064 4.064 11 C -0.189 4.189 12 C -0.091 4.091 13 C -0.242 4.242 14 C -0.117 4.117 15 C -0.195 4.195 16 C 0.095 3.905 17 C -0.481 4.481 18 H 0.068 0.932 19 C 0.036 3.964 20 N -0.826 5.826 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.253 1.253 25 C 0.066 3.934 26 C 0.050 3.950 27 O -0.382 6.382 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.286 0.714 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 -14.400 7.361 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.146 4.146 4 C 0.031 3.969 5 H 0.074 0.926 6 C -0.043 4.043 7 N -0.359 5.359 8 C 0.309 3.691 9 O -0.451 6.451 10 C -0.104 4.104 11 C -0.191 4.191 12 C -0.109 4.109 13 C -0.261 4.261 14 C -0.135 4.135 15 C -0.214 4.214 16 C 0.092 3.908 17 C -0.511 4.511 18 H 0.086 0.914 19 C -0.178 4.178 20 N -0.452 5.452 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.057 4.057 26 C -0.027 4.027 27 O -0.301 6.301 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.101 0.899 46 H 0.155 0.845 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.501 -13.969 7.015 19.407 hybrid contribution 0.172 1.194 -0.075 1.209 sum -11.329 -12.775 6.940 18.431 Atomic orbital electron populations 1.21767 0.94933 1.02114 1.02012 1.21418 0.96388 0.95467 1.02149 1.21615 0.90614 0.98861 1.03480 1.22436 0.96018 0.91244 0.87233 0.92600 1.22307 0.80361 0.98631 1.02973 1.48305 1.06540 1.55416 1.25657 1.21261 0.89999 0.76546 0.81306 1.90649 1.78063 1.44749 1.31678 1.20271 0.89124 1.01565 0.99395 1.19531 1.08239 0.93151 0.98163 1.20723 0.98034 0.98516 0.93666 1.20724 1.10145 0.94174 1.01080 1.20958 1.00086 0.94980 0.97509 1.21362 1.05959 0.99211 0.94875 1.17740 0.89556 0.91439 0.92017 1.19573 1.16574 1.03725 1.11241 0.91396 1.26657 0.94286 0.98993 0.97908 1.69864 1.14699 1.21802 1.38836 0.85428 0.78779 0.77749 0.78861 1.18922 1.19712 1.17707 1.22634 1.01158 0.94243 0.87617 1.23060 0.80397 0.94638 1.04596 1.87929 1.21775 1.82547 1.37822 0.92576 0.92092 0.92508 0.92295 0.91720 0.90625 0.89849 0.90773 0.90430 0.86975 0.88535 0.86585 0.86627 0.87647 0.88270 0.90313 0.87137 0.89946 0.84543 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.82 5.83 30.60 0.18 -1.64 16 3 C -0.11 -1.91 4.93 30.59 0.15 -1.76 16 4 C 0.09 1.96 2.77 30.69 0.09 2.04 16 5 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 6 C 0.08 2.23 5.93 86.36 0.51 2.74 16 7 N -0.62 -19.02 3.03 -818.16 -2.48 -21.50 16 8 C 0.52 20.69 7.35 87.66 0.64 21.33 16 9 O -0.57 -28.62 15.50 -3.05 -0.05 -28.67 16 10 C -0.06 -2.48 3.55 29.10 0.10 -2.38 16 11 C -0.19 -9.19 4.43 -19.41 -0.09 -9.27 16 12 C -0.09 -4.14 9.66 22.22 0.21 -3.93 16 13 C -0.24 -11.12 10.05 22.46 0.23 -10.89 16 14 C -0.12 -5.84 10.02 22.22 0.22 -5.61 16 15 C -0.19 -10.92 8.69 22.73 0.20 -10.72 16 16 C 0.09 5.27 5.57 -21.29 -0.12 5.15 16 17 C -0.48 -26.38 8.17 23.46 0.19 -26.19 16 18 H 0.07 3.64 6.64 -2.91 -0.02 3.62 16 19 C 0.04 1.86 5.19 85.26 0.44 2.30 16 20 N -0.83 -44.16 10.86 21.83 0.24 -43.92 16 21 Si 0.97 39.59 29.58 68.60 2.03 41.62 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 25 C 0.07 1.40 6.51 86.21 0.56 1.96 16 26 C 0.05 0.86 6.97 71.94 0.50 1.36 16 27 O -0.38 -8.02 9.94 -148.98 -1.48 -9.50 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.08 7.83 -2.38 -0.02 1.06 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.50 7.08 -2.39 -0.02 2.48 16 37 H 0.11 3.39 7.56 -2.39 -0.02 3.37 16 38 H 0.10 3.71 6.93 -2.39 -0.02 3.70 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 42 H 0.10 5.82 6.13 -2.91 -0.02 5.80 16 43 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 44 H 0.11 2.08 6.05 -2.38 -0.01 2.07 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.04 376.03 3.95 -66.09 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.95 Total: 32.64 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.74 Total: -36.76 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -2.24 Total: -65.42 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -1.53 Total: -38.17 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -70.04 3.95 -66.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777411148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.477 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds