Wall clock time and date at job start Tue Mar 31 2020 12:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46944 * 2 1 4 4 C 1.53003 * 109.47262 * 119.99508 * 2 1 3 5 5 H 1.08997 * 109.51462 * 300.10239 * 4 2 1 6 6 C 1.53296 * 109.51010 * 179.97438 * 4 2 1 7 7 N 1.47160 * 108.38433 * 187.72402 * 6 4 2 8 8 C 1.34769 * 120.98463 * 230.51709 * 7 6 4 9 9 O 1.21287 * 119.99955 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00092 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47456 * 179.97438 * 10 8 7 12 12 C 1.37640 * 120.13159 * 265.25753 * 11 10 8 13 13 C 1.38616 * 120.25022 * 180.25025 * 12 11 10 14 14 C 1.38651 * 120.49879 * 359.74765 * 13 12 11 15 15 C 1.37605 * 120.25182 * 359.97438 * 14 13 12 16 16 C 1.40707 * 120.12727 * 84.99666 * 11 10 8 17 17 C 1.41390 * 120.24048 * 0.02902 * 16 11 10 18 18 H 1.08000 * 120.00507 * 334.34046 * 17 16 11 19 19 C 1.39947 * 119.99704 * 154.06782 * 17 16 11 20 20 N 1.30819 * 120.00019 * 343.04908 * 19 17 16 21 21 Si 1.86803 * 119.99790 * 163.05206 * 19 17 16 22 22 H 1.48502 * 109.47252 * 90.00005 * 21 19 17 23 23 H 1.48499 * 109.47017 * 209.99647 * 21 19 17 24 24 H 1.48492 * 109.47220 * 329.99843 * 21 19 17 25 25 C 1.47149 * 118.03126 * 50.79006 * 7 6 4 26 26 C 1.53714 * 108.16403 * 309.15747 * 25 7 6 27 27 O 1.42959 * 109.14685 * 52.53947 * 26 25 7 28 28 H 1.09001 * 109.47430 * 299.99901 * 1 2 3 29 29 H 1.08994 * 109.47426 * 60.00333 * 1 2 3 30 30 H 1.09008 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47430 * 240.00099 * 2 1 3 32 32 H 1.08999 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46799 * 299.99749 * 3 2 1 34 34 H 1.08995 * 109.47027 * 60.00259 * 3 2 1 35 35 H 1.09007 * 109.68143 * 68.00793 * 6 4 2 36 36 H 1.08994 * 109.68511 * 307.44935 * 6 4 2 37 37 H 1.08998 * 109.47645 * 59.99931 * 10 8 7 38 38 H 1.08997 * 109.47259 * 299.99816 * 10 8 7 39 39 H 1.07998 * 119.87461 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.74793 * 179.71851 * 13 12 11 41 41 H 1.08006 * 119.87445 * 180.02562 * 14 13 12 42 42 H 1.07993 * 120.12503 * 180.02562 * 15 14 13 43 43 H 0.97006 * 119.99722 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.68594 * 68.93618 * 25 7 6 45 45 H 1.09001 * 109.68080 * 189.49386 * 25 7 6 46 46 H 1.09000 * 109.65594 * 292.57788 * 26 25 7 47 47 H 1.08999 * 109.48690 * 172.40099 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6756 -0.2089 2.1397 6 6 3.5729 -0.7222 1.2499 7 7 4.0361 -1.5767 2.3548 8 6 4.9521 -1.1329 3.2381 9 8 5.4076 -0.0142 3.1288 10 6 5.4102 -2.0265 4.3617 11 6 6.4291 -1.2979 5.1996 12 6 7.7729 -1.4642 4.9528 13 6 8.7123 -0.7992 5.7254 14 6 8.3109 0.0436 6.7505 15 6 6.9727 0.2293 7.0115 16 6 6.0101 -0.4408 6.2338 17 6 4.6323 -0.2584 6.4934 18 1 3.9096 -0.4097 5.7052 19 6 4.2044 0.1125 7.7732 20 7 5.0062 -0.0281 8.7972 21 14 2.4884 0.8085 8.0191 22 1 1.5393 -0.3001 8.2938 23 1 2.4959 1.7497 9.1677 24 1 2.0659 1.5290 6.7914 25 6 3.4740 -2.9323 2.4630 26 6 1.9419 -2.8217 2.4065 27 8 1.5684 -2.0708 1.2487 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 3.9407 0.2939 1.3927 36 1 3.9402 -1.1163 0.3023 37 1 5.8594 -2.9293 3.9479 38 1 4.5559 -2.2974 4.9820 39 1 8.0968 -2.1186 4.1571 40 1 9.7647 -0.9392 5.5276 41 1 9.0515 0.5570 7.3459 42 1 6.6624 0.8866 7.8102 43 1 4.7095 0.2287 9.6844 44 1 3.8314 -3.5452 1.6355 45 1 3.7761 -3.3805 3.4096 46 1 1.5775 -2.3168 3.3011 47 1 1.5072 -3.8196 2.3490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778484485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:47 Heat of formation + Delta-G solvation = -72.521369 kcal Electronic energy + Delta-G solvation = -27479.116247 eV Core-core repulsion = 23819.051764 eV Total energy + Delta-G solvation = -3660.064483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20386 -38.49961 -37.19074 -35.60949 -34.37644 -33.62105 -31.83011 -30.35038 -29.45159 -28.18054 -27.11404 -26.30292 -25.01895 -24.01802 -22.28809 -20.92760 -20.30863 -20.00341 -18.56420 -17.15713 -16.90130 -16.60542 -15.88609 -15.43893 -15.29923 -14.89905 -14.75558 -14.46597 -14.05610 -13.72929 -13.67845 -13.46403 -13.14660 -12.84286 -12.68183 -12.55940 -12.26831 -12.11990 -11.71261 -11.57708 -11.52999 -11.31664 -11.16704 -11.10411 -11.04589 -10.96702 -10.85800 -10.70280 -10.43685 -10.39716 -10.04146 -9.47620 -9.36888 -9.16921 -9.13296 -8.29364 -7.30461 -7.28525 -6.74142 -4.33830 2.77509 2.93483 3.05601 3.10605 3.25500 3.27288 3.30918 3.60929 3.92932 4.56395 4.65705 4.75320 4.85536 4.93375 5.02877 5.12684 5.17707 5.32499 5.36675 5.50619 5.52774 5.60712 5.67403 5.73310 5.75749 5.80395 5.81628 5.92834 5.97882 6.00352 6.09568 6.19183 6.20995 6.28993 6.41128 6.51960 6.69368 6.81146 7.08507 7.10095 7.30307 7.42992 7.62749 7.74556 7.93951 8.07291 8.14089 8.32112 8.64865 8.78127 8.91988 9.02276 10.20087 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.004509 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.907590 B = 6207.864445 C = 7335.748579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.151 4.151 4 C 0.082 3.918 5 H 0.064 0.936 6 C 0.084 3.916 7 N -0.631 5.631 8 C 0.519 3.481 9 O -0.518 6.518 10 C -0.068 4.068 11 C -0.182 4.182 12 C -0.081 4.081 13 C -0.239 4.239 14 C -0.106 4.106 15 C -0.160 4.160 16 C 0.130 3.870 17 C -0.456 4.456 18 H 0.072 0.928 19 C 0.078 3.922 20 N -0.794 5.794 21 Si 0.899 3.101 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.262 1.262 25 C 0.075 3.925 26 C 0.047 3.953 27 O -0.378 6.378 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.280 0.720 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.058 0.942 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 -4.225 -12.355 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.209 4.209 4 C 0.023 3.977 5 H 0.082 0.918 6 C -0.039 4.039 7 N -0.368 5.368 8 C 0.309 3.691 9 O -0.391 6.391 10 C -0.108 4.108 11 C -0.184 4.184 12 C -0.099 4.099 13 C -0.259 4.259 14 C -0.125 4.125 15 C -0.179 4.179 16 C 0.127 3.873 17 C -0.486 4.486 18 H 0.090 0.910 19 C -0.139 4.139 20 N -0.419 5.419 21 Si 0.724 3.276 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.186 1.186 25 C -0.048 4.048 26 C -0.030 4.030 27 O -0.296 6.296 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.117 0.883 46 H 0.076 0.924 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.205 -3.641 -12.270 15.203 hybrid contribution -0.591 0.298 0.472 0.813 sum -8.796 -3.343 -11.798 15.091 Atomic orbital electron populations 1.21755 0.94467 1.02321 1.01431 1.21055 0.96638 0.95753 0.96885 1.21896 1.01706 0.94962 1.02307 1.22563 0.92979 0.83295 0.98828 0.91839 1.22224 0.94002 0.97684 0.89944 1.48320 1.43841 1.14894 1.29751 1.21310 0.77417 0.88358 0.82006 1.90671 1.54986 1.20365 1.73075 1.20280 0.99983 0.96613 0.93885 1.19058 0.91735 1.04685 1.02948 1.20296 0.92973 0.98973 0.97644 1.20300 0.96679 1.06736 1.02161 1.20676 0.95809 0.98754 0.97256 1.21278 0.91436 1.02575 1.02601 1.17320 0.93237 0.87485 0.89212 1.19428 0.92679 1.41253 0.95253 0.90984 1.25858 0.99223 0.93135 0.95704 1.69821 1.36982 1.35053 1.00063 0.86455 0.82456 0.79722 0.78998 1.19520 1.19998 1.18571 1.22450 0.94287 0.84451 1.03661 1.23054 0.94016 0.96992 0.88987 1.87886 1.75987 1.23536 1.42238 0.92848 0.92778 0.91873 0.90389 0.91940 0.92038 0.92222 0.88116 0.91552 0.90649 0.88639 0.89815 0.89658 0.89575 0.86582 0.90952 0.90997 0.88344 0.92376 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.05 37.15 0.34 -1.02 16 2 C -0.08 -0.88 2.72 -90.62 -0.25 -1.12 16 3 C -0.15 -1.50 8.85 37.16 0.33 -1.17 16 4 C 0.08 1.04 2.35 -26.58 -0.06 0.98 16 5 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 6 C 0.08 1.21 5.32 -3.53 -0.02 1.19 16 7 N -0.63 -9.99 3.01 -172.02 -0.52 -10.51 16 8 C 0.52 10.41 7.35 -10.99 -0.08 10.33 16 9 O -0.52 -12.58 15.50 5.55 0.09 -12.49 16 10 C -0.07 -1.34 3.55 -29.04 -0.10 -1.45 16 11 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 12 C -0.08 -1.88 9.66 -39.66 -0.38 -2.26 16 13 C -0.24 -5.63 10.05 -39.29 -0.39 -6.02 16 14 C -0.11 -2.62 10.02 -39.66 -0.40 -3.01 16 15 C -0.16 -4.29 8.69 -38.87 -0.34 -4.63 16 16 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 17 C -0.46 -12.02 8.15 -37.74 -0.31 -12.33 16 18 H 0.07 1.86 6.67 -52.49 -0.35 1.51 16 19 C 0.08 1.97 5.15 -17.34 -0.09 1.88 16 20 N -0.79 -20.46 10.99 55.55 0.61 -19.85 16 21 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 25 C 0.08 0.90 6.57 -3.32 -0.02 0.88 16 26 C 0.05 0.52 7.00 37.53 0.26 0.79 16 27 O -0.38 -4.74 9.72 -35.23 -0.34 -5.08 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.63 7.69 -51.92 -0.40 0.23 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.65 6.62 -51.93 -0.34 0.31 16 33 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.61 5.85 -51.93 -0.30 1.31 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.26 7.92 -51.93 -0.41 0.85 16 38 H 0.10 1.85 6.58 -51.93 -0.34 1.50 16 39 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 42 H 0.12 3.20 6.22 -52.49 -0.33 2.87 16 43 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.10 6.05 -51.93 -0.31 0.79 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -30.91 372.10 -9.58 -40.49 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.42 Total: 6.98 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.57 Total: -18.96 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.09 Total: -30.36 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.26 Total: -17.57 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.91 -9.58 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778484485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.036 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds