Wall clock time and date at job start Tue Mar 31 2020 12:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46944 * 2 1 4 4 C 1.53003 * 109.47262 * 119.99508 * 2 1 3 5 5 H 1.08997 * 109.51462 * 300.10239 * 4 2 1 6 6 C 1.53296 * 109.51010 * 179.97438 * 4 2 1 7 7 N 1.47160 * 108.38433 * 187.72402 * 6 4 2 8 8 C 1.34769 * 120.98463 * 230.51709 * 7 6 4 9 9 O 1.21287 * 119.99955 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00092 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.47456 * 179.97438 * 10 8 7 12 12 C 1.37640 * 120.13159 * 265.25753 * 11 10 8 13 13 C 1.38616 * 120.25022 * 180.25025 * 12 11 10 14 14 C 1.38651 * 120.49879 * 359.74765 * 13 12 11 15 15 C 1.37605 * 120.25182 * 359.97438 * 14 13 12 16 16 C 1.40707 * 120.12727 * 84.99666 * 11 10 8 17 17 C 1.41390 * 120.24048 * 0.02902 * 16 11 10 18 18 H 1.08000 * 120.00507 * 334.34046 * 17 16 11 19 19 C 1.39947 * 119.99704 * 154.06782 * 17 16 11 20 20 N 1.30819 * 120.00019 * 343.04908 * 19 17 16 21 21 Si 1.86803 * 119.99790 * 163.05206 * 19 17 16 22 22 H 1.48502 * 109.47252 * 90.00005 * 21 19 17 23 23 H 1.48499 * 109.47017 * 209.99647 * 21 19 17 24 24 H 1.48492 * 109.47220 * 329.99843 * 21 19 17 25 25 C 1.47149 * 118.03126 * 50.79006 * 7 6 4 26 26 C 1.53714 * 108.16403 * 309.15747 * 25 7 6 27 27 O 1.42959 * 109.14685 * 52.53947 * 26 25 7 28 28 H 1.09001 * 109.47430 * 299.99901 * 1 2 3 29 29 H 1.08994 * 109.47426 * 60.00333 * 1 2 3 30 30 H 1.09008 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47430 * 240.00099 * 2 1 3 32 32 H 1.08999 * 109.46886 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46799 * 299.99749 * 3 2 1 34 34 H 1.08995 * 109.47027 * 60.00259 * 3 2 1 35 35 H 1.09007 * 109.68143 * 68.00793 * 6 4 2 36 36 H 1.08994 * 109.68511 * 307.44935 * 6 4 2 37 37 H 1.08998 * 109.47645 * 59.99931 * 10 8 7 38 38 H 1.08997 * 109.47259 * 299.99816 * 10 8 7 39 39 H 1.07998 * 119.87461 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.74793 * 179.71851 * 13 12 11 41 41 H 1.08006 * 119.87445 * 180.02562 * 14 13 12 42 42 H 1.07993 * 120.12503 * 180.02562 * 15 14 13 43 43 H 0.97006 * 119.99722 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.68594 * 68.93618 * 25 7 6 45 45 H 1.09001 * 109.68080 * 189.49386 * 25 7 6 46 46 H 1.09000 * 109.65594 * 292.57788 * 26 25 7 47 47 H 1.08999 * 109.48690 * 172.40099 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6756 -0.2089 2.1397 6 6 3.5729 -0.7222 1.2499 7 7 4.0361 -1.5767 2.3548 8 6 4.9521 -1.1329 3.2381 9 8 5.4076 -0.0142 3.1288 10 6 5.4102 -2.0265 4.3617 11 6 6.4291 -1.2979 5.1996 12 6 7.7729 -1.4642 4.9528 13 6 8.7123 -0.7992 5.7254 14 6 8.3109 0.0436 6.7505 15 6 6.9727 0.2293 7.0115 16 6 6.0101 -0.4408 6.2338 17 6 4.6323 -0.2584 6.4934 18 1 3.9096 -0.4097 5.7052 19 6 4.2044 0.1125 7.7732 20 7 5.0062 -0.0281 8.7972 21 14 2.4884 0.8085 8.0191 22 1 1.5393 -0.3001 8.2938 23 1 2.4959 1.7497 9.1677 24 1 2.0659 1.5290 6.7914 25 6 3.4740 -2.9323 2.4630 26 6 1.9419 -2.8217 2.4065 27 8 1.5684 -2.0708 1.2487 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 3.9407 0.2939 1.3927 36 1 3.9402 -1.1163 0.3023 37 1 5.8594 -2.9293 3.9479 38 1 4.5559 -2.2974 4.9820 39 1 8.0968 -2.1186 4.1571 40 1 9.7647 -0.9392 5.5276 41 1 9.0515 0.5570 7.3459 42 1 6.6624 0.8866 7.8102 43 1 4.7095 0.2287 9.6844 44 1 3.8314 -3.5452 1.6355 45 1 3.7761 -3.3805 3.4096 46 1 1.5775 -2.3168 3.3011 47 1 1.5072 -3.8196 2.3490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778484485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:46 Heat of formation + Delta-G solvation = -89.331479 kcal Electronic energy + Delta-G solvation = -27479.845188 eV Core-core repulsion = 23819.051764 eV Total energy + Delta-G solvation = -3660.793424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46181 -39.93751 -38.90446 -36.55219 -35.62831 -35.52151 -33.51780 -31.46273 -31.30907 -29.48982 -28.22580 -27.59763 -26.80851 -25.10336 -23.45845 -22.83822 -21.69975 -21.19969 -19.98594 -19.06153 -18.25249 -17.63692 -17.38557 -16.90632 -16.66468 -16.23586 -16.08431 -15.82855 -15.42107 -15.28765 -14.92492 -14.76158 -14.41356 -14.27532 -14.17446 -13.63557 -13.55933 -13.39706 -13.12321 -13.03334 -12.87854 -12.78195 -12.73702 -12.52887 -12.51060 -12.18657 -12.15632 -11.92161 -11.72491 -11.44327 -11.34208 -11.22232 -11.14514 -11.03529 -10.72219 -9.53788 -9.24479 -9.17559 -8.62234 -6.31063 0.97270 1.11086 1.32442 1.43279 1.50600 1.72878 1.98585 2.16821 2.67284 2.75900 3.56042 3.65052 3.85023 3.89769 3.95866 4.05494 4.14104 4.21676 4.30295 4.34422 4.37742 4.42498 4.57465 4.60166 4.63648 4.68010 4.71605 4.76442 4.77416 4.84633 4.92186 4.96863 5.03783 5.04460 5.16890 5.17215 5.35024 5.36845 5.42117 5.49704 5.53275 5.75254 6.01813 6.12446 6.14226 6.20173 6.37966 6.40314 6.71815 6.97276 7.09514 7.28364 8.34347 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.004509 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.907590 B = 6207.864445 C = 7335.748579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.150 4.150 4 C 0.088 3.912 5 H 0.041 0.959 6 C 0.083 3.917 7 N -0.625 5.625 8 C 0.518 3.482 9 O -0.573 6.573 10 C -0.064 4.064 11 C -0.189 4.189 12 C -0.091 4.091 13 C -0.242 4.242 14 C -0.116 4.116 15 C -0.194 4.194 16 C 0.097 3.903 17 C -0.482 4.482 18 H 0.067 0.933 19 C 0.040 3.960 20 N -0.823 5.823 21 Si 0.965 3.035 22 H -0.253 1.253 23 H -0.266 1.266 24 H -0.271 1.271 25 C 0.068 3.932 26 C 0.045 3.955 27 O -0.378 6.378 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.286 0.714 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.044 0.956 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 -5.924 -14.067 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.207 4.207 4 C 0.030 3.970 5 H 0.060 0.940 6 C -0.040 4.040 7 N -0.360 5.360 8 C 0.309 3.691 9 O -0.451 6.451 10 C -0.103 4.103 11 C -0.191 4.191 12 C -0.109 4.109 13 C -0.261 4.261 14 C -0.135 4.135 15 C -0.213 4.213 16 C 0.095 3.905 17 C -0.512 4.512 18 H 0.085 0.915 19 C -0.175 4.175 20 N -0.449 5.449 21 Si 0.787 3.213 22 H -0.177 1.177 23 H -0.191 1.191 24 H -0.195 1.195 25 C -0.054 4.054 26 C -0.032 4.032 27 O -0.297 6.297 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.126 0.874 46 H 0.063 0.937 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.352 -5.391 -13.997 17.676 hybrid contribution -0.169 0.756 0.940 1.218 sum -9.520 -4.635 -13.057 16.811 Atomic orbital electron populations 1.21722 0.93562 1.02289 1.01991 1.21068 0.97312 0.95571 0.95958 1.21893 1.01110 0.94989 1.02751 1.22493 0.91620 0.83722 0.99206 0.94044 1.22332 0.95204 0.96466 0.89974 1.48342 1.42359 1.16508 1.28839 1.21263 0.77869 0.87536 0.82477 1.90646 1.57402 1.22445 1.74619 1.20270 0.99256 0.97308 0.93513 1.19539 0.93414 1.03797 1.02348 1.20731 0.92694 0.99239 0.98249 1.20713 0.98440 1.05701 1.01269 1.20953 0.95389 0.99156 0.97975 1.21292 0.92841 1.03818 1.03394 1.17708 0.93693 0.88548 0.90525 1.19545 0.92701 1.43079 0.95833 0.91512 1.26606 1.03005 0.92883 0.95035 1.69875 1.38811 1.35638 1.00605 0.85458 0.77970 0.79357 0.78540 1.17735 1.19056 1.19508 1.22798 0.94824 0.82496 1.05277 1.23230 0.93434 0.98411 0.88109 1.87896 1.75904 1.23175 1.42738 0.93552 0.90988 0.92152 0.89290 0.92884 0.90000 0.93354 0.90403 0.89777 0.87047 0.88516 0.86653 0.86648 0.87627 0.88546 0.90290 0.88484 0.87407 0.93716 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.05 71.98 0.65 -1.74 16 2 C -0.08 -1.55 2.72 -10.79 -0.03 -1.58 16 3 C -0.15 -2.87 8.85 71.98 0.64 -2.24 16 4 C 0.09 2.17 2.35 30.69 0.07 2.24 16 5 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 6 C 0.08 2.33 5.32 86.35 0.46 2.79 16 7 N -0.63 -19.19 3.01 -816.53 -2.46 -21.65 16 8 C 0.52 20.77 7.35 87.66 0.64 21.41 16 9 O -0.57 -28.67 15.50 -3.05 -0.05 -28.72 16 10 C -0.06 -2.48 3.55 29.10 0.10 -2.38 16 11 C -0.19 -9.20 4.43 -19.40 -0.09 -9.29 16 12 C -0.09 -4.14 9.66 22.22 0.21 -3.93 16 13 C -0.24 -11.13 10.05 22.46 0.23 -10.90 16 14 C -0.12 -5.79 10.02 22.22 0.22 -5.57 16 15 C -0.19 -10.84 8.69 22.73 0.20 -10.64 16 16 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 17 C -0.48 -26.27 8.15 23.46 0.19 -26.08 16 18 H 0.07 3.58 6.67 -2.91 -0.02 3.56 16 19 C 0.04 2.03 5.15 85.26 0.44 2.47 16 20 N -0.82 -43.74 10.99 21.83 0.24 -43.50 16 21 Si 0.97 39.37 29.59 68.60 2.03 41.40 16 22 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 23 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 C 0.07 1.46 6.57 86.50 0.57 2.02 16 26 C 0.05 0.90 7.00 72.22 0.51 1.40 16 27 O -0.38 -8.66 9.72 -148.98 -1.45 -10.11 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.08 7.69 -2.38 -0.02 1.06 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.11 6.62 -2.39 -0.02 1.09 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 2.58 5.85 -2.38 -0.01 2.56 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.11 3.42 7.92 -2.39 -0.02 3.40 16 38 H 0.10 3.71 6.58 -2.39 -0.02 3.69 16 39 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.10 5.62 6.22 -2.91 -0.02 5.61 16 43 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.11 2.12 6.05 -2.39 -0.01 2.11 16 46 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.74 372.10 4.16 -65.58 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.95 Total: 33.71 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 4.90 Total: -36.72 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -2.22 Total: -65.14 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.50 Total: -38.83 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -69.74 4.16 -65.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778484485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.754 kcal (2) G-P(sol) polarization free energy of solvation -69.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds