Wall clock time and date at job start Tue Mar 31 2020 12:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46919 * 2 1 4 4 C 1.52997 * 109.47207 * 120.00028 * 2 1 3 5 5 H 1.09008 * 109.52235 * 300.08235 * 4 2 1 6 6 C 1.53043 * 109.49811 * 60.15871 * 4 2 1 7 7 C 1.53042 * 109.53566 * 181.31658 * 6 4 2 8 8 C 1.53618 * 109.24272 * 298.51192 * 7 6 4 9 9 N 1.46922 * 108.54570 * 54.85766 * 8 7 6 10 10 C 1.34783 * 120.62978 * 126.36403 * 9 8 7 11 11 O 1.21595 * 119.99853 * 185.53741 * 10 9 8 12 12 C 1.47530 * 119.99913 * 5.54401 * 10 9 8 13 13 C 1.39656 * 120.19968 * 53.85538 * 12 10 9 14 14 C 1.37832 * 119.92297 * 179.97438 * 13 12 10 15 15 C 1.38576 * 120.31836 * 0.02562 * 14 13 12 16 16 C 1.38020 * 120.40413 * 359.97438 * 15 14 13 17 17 C 1.38833 * 120.07396 * 359.97438 * 16 15 14 18 18 O 1.35521 * 120.16427 * 179.97438 * 17 16 15 19 19 C 1.34817 * 116.99925 * 5.42725 * 18 17 16 20 20 H 1.07998 * 119.99874 * 354.96200 * 19 18 17 21 21 C 1.38689 * 119.99866 * 174.96233 * 19 18 17 22 22 N 1.31520 * 120.00168 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00158 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46722 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47408 * 119.99957 * 23 21 19 26 26 H 1.48495 * 109.47165 * 240.00087 * 23 21 19 27 27 C 1.46930 * 118.74093 * 306.09485 * 9 8 7 28 28 H 1.09006 * 109.46904 * 299.99890 * 1 2 3 29 29 H 1.08999 * 109.47159 * 59.99461 * 1 2 3 30 30 H 1.08996 * 109.47290 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46668 * 240.00069 * 2 1 3 32 32 H 1.08996 * 109.47130 * 299.99695 * 3 2 1 33 33 H 1.08994 * 109.46890 * 60.00564 * 3 2 1 34 34 H 1.09002 * 109.46748 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.45925 * 301.34078 * 6 4 2 36 36 H 1.08996 * 109.45535 * 61.31085 * 6 4 2 37 37 H 1.08994 * 109.49859 * 58.59453 * 7 6 4 38 38 H 1.09008 * 109.49126 * 178.68725 * 7 6 4 39 39 H 1.08997 * 109.74428 * 295.12077 * 8 7 6 40 40 H 1.08997 * 109.66624 * 174.55155 * 8 7 6 41 41 H 1.08004 * 120.04479 * 359.96082 * 13 12 10 42 42 H 1.07998 * 119.84258 * 180.02562 * 14 13 12 43 43 H 1.08000 * 119.79810 * 179.97438 * 15 14 13 44 44 H 1.08001 * 119.96582 * 179.69864 * 16 15 14 45 45 H 0.97006 * 120.00264 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.58855 * 173.64177 * 27 9 8 47 47 H 1.08993 * 109.58636 * 294.07310 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6759 -0.2089 2.1398 6 6 1.5335 -2.1654 1.2478 7 6 2.0159 -2.8781 2.5133 8 6 3.5518 -2.9048 2.5251 9 7 4.0442 -1.5278 2.3837 10 6 4.9168 -1.0157 3.2742 11 8 5.2394 0.1546 3.2052 12 6 5.4806 -1.8753 4.3324 13 6 6.1139 -3.0748 4.0001 14 6 6.6391 -3.8732 4.9934 15 6 6.5416 -3.4919 6.3221 16 6 5.9186 -2.3092 6.6655 17 6 5.3847 -1.4919 5.6784 18 8 4.7721 -0.3305 6.0136 19 6 4.8123 0.0302 7.3120 20 1 5.2453 -0.6354 8.0441 21 6 4.2977 1.2558 7.7076 22 7 3.7700 2.0660 6.8161 23 14 4.3541 1.7559 9.5065 24 1 4.9928 0.6757 10.3007 25 1 5.1415 3.0069 9.6481 26 1 2.9723 1.9822 10.0009 27 6 3.5720 -0.7215 1.2498 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 0.4439 -2.1680 1.2225 36 1 1.9183 -2.6843 0.3699 37 1 1.6521 -2.3456 3.3919 38 1 1.6354 -3.8996 2.5230 39 1 3.9159 -3.5100 1.6949 40 1 3.9042 -3.3239 3.4675 41 1 6.1919 -3.3767 2.9661 42 1 7.1289 -4.8003 4.7349 43 1 6.9557 -4.1241 7.0936 44 1 5.8423 -2.0213 7.7037 45 1 3.4097 2.9232 7.0928 46 1 3.9375 0.3003 1.3506 47 1 3.9376 -1.1524 0.3178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781794803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:53 Heat of formation + Delta-G solvation = -72.831203 kcal Electronic energy + Delta-G solvation = -27607.397723 eV Core-core repulsion = 23947.319805 eV Total energy + Delta-G solvation = -3660.077918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62910 -40.41357 -38.90773 -38.06445 -36.36062 -34.36589 -33.31051 -32.33528 -30.69844 -30.52031 -28.39261 -27.45201 -26.30727 -24.75563 -23.93517 -23.11827 -22.13224 -20.76859 -20.38881 -19.91645 -18.79499 -18.03385 -17.17103 -16.66877 -16.39291 -16.18843 -15.75151 -15.50933 -15.46194 -15.25756 -15.13604 -14.97936 -14.64981 -14.48627 -14.35392 -13.87338 -13.78393 -13.58643 -13.39764 -13.09108 -12.97550 -12.71145 -12.63050 -12.50947 -12.38080 -12.27371 -12.12173 -12.04349 -11.78751 -11.57146 -11.47115 -11.32900 -11.11078 -10.87618 -10.70904 -9.79970 -9.54966 -9.06734 -8.49854 -6.20586 0.24352 0.68871 1.29843 1.40429 1.49990 1.74954 2.12472 2.15380 2.79964 3.11421 3.41829 3.58728 3.70915 3.84827 3.90123 4.06521 4.10152 4.18085 4.22801 4.26297 4.34577 4.44410 4.52563 4.60558 4.60852 4.63382 4.76266 4.79788 4.85526 4.92123 4.94109 4.97595 4.99493 5.05825 5.08173 5.10037 5.13534 5.18986 5.23138 5.38374 5.48012 5.49973 5.55251 5.57589 5.68471 5.71061 5.93404 6.15071 6.43899 6.91600 7.28299 7.73942 8.72440 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004755 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.372043 B = 5886.744672 C = 7575.980888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.154 4.154 4 C -0.094 4.094 5 H 0.029 0.971 6 C -0.105 4.105 7 C -0.135 4.135 8 C 0.102 3.898 9 N -0.608 5.608 10 C 0.564 3.436 11 O -0.588 6.588 12 C -0.228 4.228 13 C -0.035 4.035 14 C -0.189 4.189 15 C -0.046 4.046 16 C -0.249 4.249 17 C 0.144 3.856 18 O -0.216 6.216 19 C -0.420 4.420 20 H 0.108 0.892 21 C -0.025 4.025 22 N -0.916 5.916 23 Si 1.023 2.977 24 H -0.244 1.244 25 H -0.271 1.271 26 H -0.267 1.267 27 C 0.115 3.885 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.152 0.848 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.123 0.877 45 H 0.271 0.729 46 H 0.054 0.946 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -15.152 -12.018 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.114 4.114 5 H 0.048 0.952 6 C -0.142 4.142 7 C -0.173 4.173 8 C -0.019 4.019 9 N -0.341 5.341 10 C 0.354 3.646 11 O -0.468 6.468 12 C -0.233 4.233 13 C -0.053 4.053 14 C -0.208 4.208 15 C -0.064 4.064 16 C -0.269 4.269 17 C 0.090 3.910 18 O -0.121 6.121 19 C -0.495 4.495 20 H 0.126 0.874 21 C -0.223 4.223 22 N -0.553 5.553 23 Si 0.841 3.159 24 H -0.167 1.167 25 H -0.196 1.196 26 H -0.192 1.192 27 C -0.007 4.007 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.170 0.830 42 H 0.183 0.817 43 H 0.173 0.827 44 H 0.141 0.859 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.459 -14.170 -12.208 19.021 hybrid contribution -0.051 1.368 1.252 1.856 sum -3.511 -12.802 -10.956 17.212 Atomic orbital electron populations 1.21868 0.94089 1.02695 1.01528 1.21063 0.96611 0.95100 0.97084 1.21931 1.00725 0.97057 1.01401 1.21540 0.93772 0.97979 0.98078 0.95226 1.21612 1.01493 0.93038 0.98096 1.22024 0.94760 1.02453 0.98087 1.22178 0.94829 0.81050 1.03888 1.48097 1.43761 1.15784 1.26462 1.18634 0.78690 0.86215 0.81028 1.90736 1.62879 1.19256 1.73973 1.19121 1.13650 1.00609 0.89883 1.21165 0.93568 0.89628 1.00980 1.21164 1.05634 1.02317 0.91640 1.21406 0.93641 0.93433 0.97953 1.21283 1.08069 0.98514 0.98999 1.19920 0.90710 0.86798 0.93523 1.83994 1.64863 1.33794 1.29407 1.21996 1.42224 1.03842 0.81466 0.87450 1.26756 0.95363 0.94344 1.05804 1.70282 1.38071 1.10142 1.36755 0.84486 0.78853 0.78998 0.73520 1.16678 1.19624 1.19172 1.21752 0.94807 0.95731 0.88438 0.94561 0.91316 0.90810 0.88572 0.90746 0.95129 0.93547 0.90142 0.88877 0.95204 0.87470 0.87683 0.90121 0.83034 0.81681 0.82701 0.85879 0.92047 0.92790 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.85 71.98 0.64 -2.02 16 2 C -0.08 -1.69 2.51 -10.79 -0.03 -1.72 16 3 C -0.15 -3.87 8.85 71.98 0.64 -3.24 16 4 C -0.09 -2.57 1.92 -10.72 -0.02 -2.59 16 5 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 6 C -0.11 -2.10 4.85 30.62 0.15 -1.95 16 7 C -0.14 -3.16 6.10 30.82 0.19 -2.97 16 8 C 0.10 2.64 5.59 86.51 0.48 3.13 16 9 N -0.61 -22.00 2.97 -821.84 -2.44 -24.44 16 10 C 0.56 27.23 6.83 86.69 0.59 27.82 16 11 O -0.59 -35.39 16.17 -0.75 -0.01 -35.41 16 12 C -0.23 -10.26 4.62 -19.99 -0.09 -10.35 16 13 C -0.04 -1.12 7.76 22.52 0.17 -0.94 16 14 C -0.19 -5.13 10.03 22.25 0.22 -4.90 16 15 C -0.05 -1.45 10.03 22.30 0.22 -1.22 16 16 C -0.25 -10.74 9.16 22.36 0.20 -10.53 16 17 C 0.14 7.51 6.65 22.91 0.15 7.66 16 18 O -0.22 -13.94 8.95 -16.82 -0.15 -14.09 16 19 C -0.42 -25.65 9.49 67.93 0.64 -25.01 16 20 H 0.11 5.89 5.21 -2.91 -0.02 5.88 16 21 C -0.02 -1.48 5.49 84.85 0.47 -1.02 16 22 N -0.92 -60.58 13.67 21.62 0.30 -60.29 16 23 Si 1.02 44.86 29.55 68.60 2.03 46.88 16 24 H -0.24 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 C 0.11 3.66 5.19 86.36 0.45 4.11 16 28 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.11 6.40 -2.39 -0.02 1.10 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 1.27 6.56 -2.39 -0.02 1.25 16 35 H 0.08 1.41 6.36 -2.39 -0.02 1.40 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.29 5.37 -2.39 -0.01 2.28 16 41 H 0.15 3.70 7.74 -2.91 -0.02 3.68 16 42 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 45 H 0.27 16.39 8.31 -92.70 -0.77 15.62 16 46 H 0.05 2.16 5.61 -2.39 -0.01 2.15 16 47 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -89.07 369.42 5.77 -83.30 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.96 Total: 29.78 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 5.08 Total: -25.75 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.14 Total: -84.73 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.16 Total: -49.49 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -89.07 5.77 -83.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781794803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.469 kcal (2) G-P(sol) polarization free energy of solvation -89.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds