Wall clock time and date at job start Tue Mar 31 2020 12:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 C 1.52995 * 109.47393 * 120.00123 * 2 1 3 5 5 H 1.09004 * 109.52302 * 299.91954 * 4 2 1 6 6 C 1.53045 * 109.50166 * 179.83679 * 4 2 1 7 7 C 1.53040 * 109.53824 * 178.68397 * 6 4 2 8 8 C 1.52754 * 109.38374 * 61.24223 * 7 6 4 9 9 N 1.46927 * 109.00588 * 305.58486 * 8 7 6 10 10 C 1.34785 * 120.63162 * 233.58514 * 9 8 7 11 11 O 1.21590 * 120.00206 * 173.88594 * 10 9 8 12 12 C 1.47536 * 119.99620 * 353.88630 * 10 9 8 13 13 C 1.39673 * 120.19678 * 306.23653 * 12 10 9 14 14 C 1.37827 * 119.91237 * 180.29906 * 13 12 10 15 15 C 1.38570 * 120.32792 * 359.72628 * 14 13 12 16 16 C 1.38024 * 120.40203 * 359.97317 * 15 14 13 17 17 C 1.38838 * 120.07031 * 0.02583 * 16 15 14 18 18 O 1.35519 * 120.15819 * 179.97438 * 17 16 15 19 19 C 1.34819 * 117.00235 * 5.45603 * 18 17 16 20 20 H 1.07999 * 119.99365 * 354.94188 * 19 18 17 21 21 C 1.38694 * 119.99728 * 174.94882 * 19 18 17 22 22 N 1.31523 * 119.99499 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00322 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47061 * 270.00024 * 23 21 19 25 25 H 1.48504 * 109.47250 * 150.00408 * 23 21 19 26 26 H 1.48494 * 109.47228 * 30.00194 * 23 21 19 27 27 C 1.46921 * 118.74193 * 53.31570 * 9 8 7 28 28 H 1.09002 * 109.47083 * 300.00296 * 1 2 3 29 29 H 1.09001 * 109.47174 * 59.99485 * 1 2 3 30 30 H 1.08997 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00488 * 2 1 3 32 32 H 1.09000 * 109.47635 * 60.00324 * 3 2 1 33 33 H 1.09006 * 109.47591 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47076 * 299.99796 * 3 2 1 35 35 H 1.08995 * 109.45664 * 298.70717 * 6 4 2 36 36 H 1.09002 * 109.45558 * 58.67563 * 6 4 2 37 37 H 1.09002 * 109.49238 * 181.31792 * 7 6 4 38 38 H 1.09002 * 109.49551 * 301.37629 * 7 6 4 39 39 H 1.09002 * 109.50903 * 185.70850 * 8 7 6 40 40 H 1.08989 * 109.43692 * 65.42075 * 8 7 6 41 41 H 1.07990 * 120.04358 * 0.04786 * 13 12 10 42 42 H 1.08001 * 119.83735 * 179.74635 * 14 13 12 43 43 H 1.08004 * 119.80341 * 180.02562 * 15 14 13 44 44 H 1.08000 * 119.96421 * 179.97438 * 16 15 14 45 45 H 0.97001 * 119.99859 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58886 * 66.42136 * 27 9 8 47 47 H 1.08994 * 109.58989 * 186.71291 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6784 -0.2072 2.1398 6 6 3.5705 -0.7252 1.2478 7 6 4.0817 -1.4176 2.5132 8 6 3.5942 -2.8651 2.5312 9 7 2.1324 -2.8796 2.3837 10 6 1.3587 -3.5309 3.2747 11 8 0.1478 -3.4438 3.2065 12 6 1.9810 -4.3493 4.3327 13 6 2.9015 -5.3458 4.0001 14 6 3.4747 -6.1111 4.9927 15 6 3.1468 -5.8934 6.3214 16 6 2.2436 -4.9081 6.6656 17 6 1.6562 -4.1275 5.6791 18 8 0.7688 -3.1599 6.0150 19 6 0.5835 -2.9292 7.3303 20 1 1.0682 -3.5580 8.0623 21 6 -0.2298 -1.8843 7.7431 22 7 -0.4110 -1.6595 9.0263 23 14 -1.0678 -0.7963 6.4768 24 1 -0.1839 0.3505 6.1470 25 1 -2.3497 -0.2901 7.0298 26 1 -1.3360 -1.5843 5.2471 27 6 1.5297 -2.1657 1.2498 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 3.1301 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 3.9313 -1.2607 0.3697 36 1 3.9361 0.3014 1.2227 37 1 5.1715 -1.3993 2.5228 38 1 3.7013 -0.8966 3.3919 39 1 3.8705 -3.3305 3.4774 40 1 4.0502 -3.4117 1.7059 41 1 3.1606 -5.5192 2.9661 42 1 4.1832 -6.8840 4.7338 43 1 3.6014 -6.4978 7.0924 44 1 1.9929 -4.7448 7.7033 45 1 -0.9794 -0.9285 9.3151 46 1 1.8140 -2.6540 0.3177 47 1 0.4443 -2.1719 1.3493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781794804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:58 Heat of formation + Delta-G solvation = -51.244557 kcal Electronic energy + Delta-G solvation = -27791.572035 eV Core-core repulsion = 24132.430184 eV Total energy + Delta-G solvation = -3659.141851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.27667 -39.05492 -37.58285 -36.54767 -35.28104 -32.47894 -32.20427 -31.02526 -29.52759 -29.23433 -27.53677 -25.46616 -25.06366 -23.69972 -22.65794 -21.39610 -21.05927 -19.84792 -19.10950 -17.97441 -17.37686 -16.61515 -15.83825 -15.36595 -14.95371 -14.73894 -14.52325 -14.18282 -14.07486 -13.89679 -13.83556 -13.67156 -13.63951 -13.19868 -12.83763 -12.64365 -12.44086 -12.36293 -12.25139 -12.11813 -11.67515 -11.50966 -11.38650 -11.23272 -11.07602 -10.93852 -10.83213 -10.79678 -10.64323 -10.37677 -10.20165 -10.18701 -9.63316 -9.17517 -8.93302 -8.37022 -8.28187 -7.50697 -6.49196 -4.15274 1.69929 2.15817 3.19767 3.23886 3.27076 3.43607 3.53910 4.26230 4.37478 4.55866 4.64680 4.70425 4.77381 4.97106 5.03651 5.03934 5.09821 5.19760 5.34635 5.41177 5.42004 5.47862 5.56149 5.58763 5.64543 5.68317 5.77162 5.81532 5.82436 5.86767 5.91532 5.97617 6.00336 6.07149 6.08252 6.11207 6.24747 6.31350 6.37129 6.44747 6.53611 6.82348 6.88590 7.00517 7.14669 7.46410 7.65327 7.79876 7.93267 8.72649 8.85930 9.46967 10.56883 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.005624 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.125471 B = 4977.634761 C = 6762.343400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.100 4.100 5 H 0.076 0.924 6 C -0.113 4.113 7 C -0.138 4.138 8 C 0.108 3.892 9 N -0.616 5.616 10 C 0.578 3.422 11 O -0.528 6.528 12 C -0.214 4.214 13 C -0.044 4.044 14 C -0.214 4.214 15 C -0.056 4.056 16 C -0.222 4.222 17 C 0.196 3.804 18 O -0.191 6.191 19 C -0.393 4.393 20 H 0.109 0.891 21 C 0.072 3.928 22 N -0.871 5.871 23 Si 0.892 3.108 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.245 1.245 27 C 0.118 3.882 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.281 0.719 46 H 0.060 0.940 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 0.734 -16.281 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.120 4.120 5 H 0.094 0.906 6 C -0.150 4.150 7 C -0.176 4.176 8 C -0.015 4.015 9 N -0.350 5.350 10 C 0.368 3.632 11 O -0.404 6.404 12 C -0.219 4.219 13 C -0.063 4.063 14 C -0.233 4.233 15 C -0.075 4.075 16 C -0.241 4.241 17 C 0.141 3.859 18 O -0.093 6.093 19 C -0.468 4.468 20 H 0.127 0.873 21 C -0.133 4.133 22 N -0.507 5.507 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.206 1.206 26 H -0.168 1.168 27 C -0.005 4.005 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.156 0.844 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.073 1.079 -16.252 18.644 hybrid contribution -0.267 0.500 -0.136 0.583 sum 8.806 1.579 -16.389 18.671 Atomic orbital electron populations 1.21920 0.95121 1.02240 1.01729 1.21069 0.95877 0.96101 0.97551 1.21887 1.01048 0.95919 1.01669 1.21612 0.95721 0.95914 0.98729 0.90565 1.21614 0.94952 1.00710 0.97762 1.21873 1.00569 0.96273 0.98918 1.21676 0.79990 0.96852 1.02950 1.47994 1.06815 1.52997 1.27213 1.18261 0.86258 0.78469 0.80222 1.90758 1.14121 1.63043 1.72461 1.18743 1.07169 1.04961 0.91018 1.20705 0.93367 0.93629 0.98594 1.20551 1.05936 1.03951 0.92876 1.20950 0.95156 0.95504 0.95883 1.21259 1.02714 0.99761 1.00415 1.18947 0.87285 0.88395 0.91307 1.83624 1.50286 1.47206 1.28193 1.20833 1.31221 1.16275 0.78496 0.87336 1.24440 0.96037 0.96475 0.96383 1.69626 1.36870 1.30565 1.13652 0.86328 0.78800 0.80601 0.82577 1.19932 1.20627 1.16826 1.21599 0.99975 0.90812 0.88094 0.92489 0.92858 0.92200 0.91233 0.92642 0.92419 0.92907 0.92004 0.91546 0.90841 0.91243 0.88779 0.92017 0.86581 0.86915 0.86809 0.84414 0.90852 0.92153 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.85 37.16 0.33 -1.32 16 2 C -0.09 -0.88 2.51 -90.62 -0.23 -1.10 16 3 C -0.15 -1.34 8.85 37.16 0.33 -1.02 16 4 C -0.10 -1.23 1.92 -90.50 -0.17 -1.40 16 5 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 6 C -0.11 -1.17 4.86 -26.69 -0.13 -1.30 16 7 C -0.14 -1.60 6.06 -26.84 -0.16 -1.76 16 8 C 0.11 1.40 5.54 -3.94 -0.02 1.38 16 9 N -0.62 -10.07 2.98 -174.27 -0.52 -10.59 16 10 C 0.58 12.14 6.82 -12.47 -0.09 12.06 16 11 O -0.53 -13.24 16.18 2.10 0.03 -13.21 16 12 C -0.21 -4.40 4.61 -104.81 -0.48 -4.89 16 13 C -0.04 -0.73 7.79 -39.20 -0.31 -1.03 16 14 C -0.21 -3.31 10.02 -39.61 -0.40 -3.71 16 15 C -0.06 -0.96 10.03 -39.54 -0.40 -1.35 16 16 C -0.22 -4.67 9.16 -39.44 -0.36 -5.03 16 17 C 0.20 4.62 6.65 -38.60 -0.26 4.37 16 18 O -0.19 -5.23 7.79 -2.40 -0.02 -5.25 16 19 C -0.39 -11.18 9.95 30.90 0.31 -10.87 16 20 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 21 C 0.07 2.05 5.49 -17.52 -0.10 1.95 16 22 N -0.87 -25.19 13.96 55.48 0.77 -24.42 16 23 Si 0.89 22.74 28.62 -169.99 -4.86 17.88 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.25 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.12 1.67 5.20 -3.71 -0.02 1.65 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 6.41 -51.93 -0.33 0.15 16 34 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.63 6.37 -51.93 -0.33 0.30 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.32 5.40 -51.93 -0.28 1.04 16 40 H 0.06 0.65 8.14 -51.94 -0.42 0.23 16 41 H 0.12 1.58 7.76 -52.49 -0.41 1.17 16 42 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.14 3.01 5.64 -52.49 -0.30 2.71 16 45 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.53 5.61 -51.93 -0.29 1.24 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -32.20 368.30 -8.39 -40.59 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.20 Total: 2.83 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.15 Total: -13.38 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.26 Total: -35.00 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.02 Total: -18.46 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.86 Total: 17.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.20 -8.39 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781794804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.659 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds