Wall clock time and date at job start Tue Mar 31 2020 12:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 C 1.52995 * 109.47393 * 120.00123 * 2 1 3 5 5 H 1.09004 * 109.52302 * 299.91954 * 4 2 1 6 6 C 1.53045 * 109.50166 * 179.83679 * 4 2 1 7 7 C 1.53040 * 109.53824 * 178.68397 * 6 4 2 8 8 C 1.52754 * 109.38374 * 61.24223 * 7 6 4 9 9 N 1.46927 * 109.00588 * 305.58486 * 8 7 6 10 10 C 1.34785 * 120.63162 * 233.58514 * 9 8 7 11 11 O 1.21590 * 120.00206 * 173.88594 * 10 9 8 12 12 C 1.47536 * 119.99620 * 353.88630 * 10 9 8 13 13 C 1.39673 * 120.19678 * 306.23653 * 12 10 9 14 14 C 1.37827 * 119.91237 * 180.29906 * 13 12 10 15 15 C 1.38570 * 120.32792 * 359.72628 * 14 13 12 16 16 C 1.38024 * 120.40203 * 359.97317 * 15 14 13 17 17 C 1.38838 * 120.07031 * 0.02583 * 16 15 14 18 18 O 1.35519 * 120.15819 * 179.97438 * 17 16 15 19 19 C 1.34819 * 117.00235 * 5.45603 * 18 17 16 20 20 H 1.07999 * 119.99365 * 354.94188 * 19 18 17 21 21 C 1.38694 * 119.99728 * 174.94882 * 19 18 17 22 22 N 1.31523 * 119.99499 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00322 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47061 * 270.00024 * 23 21 19 25 25 H 1.48504 * 109.47250 * 150.00408 * 23 21 19 26 26 H 1.48494 * 109.47228 * 30.00194 * 23 21 19 27 27 C 1.46921 * 118.74193 * 53.31570 * 9 8 7 28 28 H 1.09002 * 109.47083 * 300.00296 * 1 2 3 29 29 H 1.09001 * 109.47174 * 59.99485 * 1 2 3 30 30 H 1.08997 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00488 * 2 1 3 32 32 H 1.09000 * 109.47635 * 60.00324 * 3 2 1 33 33 H 1.09006 * 109.47591 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47076 * 299.99796 * 3 2 1 35 35 H 1.08995 * 109.45664 * 298.70717 * 6 4 2 36 36 H 1.09002 * 109.45558 * 58.67563 * 6 4 2 37 37 H 1.09002 * 109.49238 * 181.31792 * 7 6 4 38 38 H 1.09002 * 109.49551 * 301.37629 * 7 6 4 39 39 H 1.09002 * 109.50903 * 185.70850 * 8 7 6 40 40 H 1.08989 * 109.43692 * 65.42075 * 8 7 6 41 41 H 1.07990 * 120.04358 * 0.04786 * 13 12 10 42 42 H 1.08001 * 119.83735 * 179.74635 * 14 13 12 43 43 H 1.08004 * 119.80341 * 180.02562 * 15 14 13 44 44 H 1.08000 * 119.96421 * 179.97438 * 16 15 14 45 45 H 0.97001 * 119.99859 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58886 * 66.42136 * 27 9 8 47 47 H 1.08994 * 109.58989 * 186.71291 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6784 -0.2072 2.1398 6 6 3.5705 -0.7252 1.2478 7 6 4.0817 -1.4176 2.5132 8 6 3.5942 -2.8651 2.5312 9 7 2.1324 -2.8796 2.3837 10 6 1.3587 -3.5309 3.2747 11 8 0.1478 -3.4438 3.2065 12 6 1.9810 -4.3493 4.3327 13 6 2.9015 -5.3458 4.0001 14 6 3.4747 -6.1111 4.9927 15 6 3.1468 -5.8934 6.3214 16 6 2.2436 -4.9081 6.6656 17 6 1.6562 -4.1275 5.6791 18 8 0.7688 -3.1599 6.0150 19 6 0.5835 -2.9292 7.3303 20 1 1.0682 -3.5580 8.0623 21 6 -0.2298 -1.8843 7.7431 22 7 -0.4110 -1.6595 9.0263 23 14 -1.0678 -0.7963 6.4768 24 1 -0.1839 0.3505 6.1470 25 1 -2.3497 -0.2901 7.0298 26 1 -1.3360 -1.5843 5.2471 27 6 1.5297 -2.1657 1.2498 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6768 1.9564 0.8900 33 1 3.1301 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 3.9313 -1.2607 0.3697 36 1 3.9361 0.3014 1.2227 37 1 5.1715 -1.3993 2.5228 38 1 3.7013 -0.8966 3.3919 39 1 3.8705 -3.3305 3.4774 40 1 4.0502 -3.4117 1.7059 41 1 3.1606 -5.5192 2.9661 42 1 4.1832 -6.8840 4.7338 43 1 3.6014 -6.4978 7.0924 44 1 1.9929 -4.7448 7.7033 45 1 -0.9794 -0.9285 9.3151 46 1 1.8140 -2.6540 0.3177 47 1 0.4443 -2.1719 1.3493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781794804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:57 Heat of formation + Delta-G solvation = -70.491578 kcal Electronic energy + Delta-G solvation = -27792.406649 eV Core-core repulsion = 24132.430184 eV Total energy + Delta-G solvation = -3659.976464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72634 -40.54137 -38.98208 -38.18966 -36.40620 -34.56568 -33.35962 -32.39314 -30.87267 -30.61615 -28.41542 -27.38965 -26.33297 -24.77651 -24.01136 -23.00688 -22.17874 -20.80601 -20.48952 -19.88932 -18.95683 -18.15496 -17.27134 -16.82682 -16.38700 -16.26091 -15.72284 -15.55661 -15.52220 -15.31752 -15.27278 -14.96765 -14.66600 -14.54665 -14.35863 -14.13974 -13.92552 -13.80843 -13.41766 -13.20063 -12.99889 -12.84307 -12.70122 -12.53784 -12.44284 -12.30895 -12.18559 -12.04468 -11.78847 -11.59057 -11.55514 -11.35783 -11.12327 -11.02052 -10.78502 -9.85080 -9.59904 -9.17924 -8.62015 -6.31087 0.17897 0.61267 1.15442 1.17963 1.43698 1.66774 2.08676 2.18274 2.68056 2.96409 3.04121 3.54333 3.68243 3.81652 3.87475 4.04913 4.07254 4.17193 4.20649 4.24534 4.34330 4.43182 4.48688 4.55974 4.60543 4.61491 4.75043 4.78098 4.79313 4.85645 4.92712 4.96465 4.97012 5.04965 5.08044 5.11006 5.17987 5.22404 5.28695 5.37310 5.46722 5.47386 5.53710 5.58650 5.65260 5.68672 5.81581 6.13520 6.37409 6.74303 7.19114 7.51930 8.49207 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010603 B = 0.005624 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.125471 B = 4977.634761 C = 6762.343400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.146 4.146 4 C -0.097 4.097 5 H 0.033 0.967 6 C -0.106 4.106 7 C -0.137 4.137 8 C 0.101 3.899 9 N -0.607 5.607 10 C 0.565 3.435 11 O -0.587 6.587 12 C -0.219 4.219 13 C -0.035 4.035 14 C -0.179 4.179 15 C -0.049 4.049 16 C -0.241 4.241 17 C 0.154 3.846 18 O -0.235 6.235 19 C -0.398 4.398 20 H 0.094 0.906 21 C 0.027 3.973 22 N -0.909 5.909 23 Si 0.946 3.054 24 H -0.267 1.267 25 H -0.259 1.259 26 H -0.281 1.281 27 C 0.113 3.887 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.153 0.847 44 H 0.116 0.884 45 H 0.286 0.714 46 H 0.096 0.904 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.070 -0.860 -19.974 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 C -0.203 4.203 4 C -0.117 4.117 5 H 0.052 0.948 6 C -0.143 4.143 7 C -0.175 4.175 8 C -0.020 4.020 9 N -0.339 5.339 10 C 0.356 3.644 11 O -0.468 6.468 12 C -0.224 4.224 13 C -0.053 4.053 14 C -0.197 4.197 15 C -0.067 4.067 16 C -0.261 4.261 17 C 0.102 3.898 18 O -0.141 6.141 19 C -0.474 4.474 20 H 0.112 0.888 21 C -0.173 4.173 22 N -0.549 5.549 23 Si 0.770 3.230 24 H -0.192 1.192 25 H -0.183 1.183 26 H -0.207 1.207 27 C -0.009 4.009 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.175 0.825 42 H 0.186 0.814 43 H 0.170 0.830 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.188 -0.519 -19.978 23.944 hybrid contribution -1.233 0.702 0.797 1.627 sum 11.955 0.183 -19.181 22.602 Atomic orbital electron populations 1.21941 0.96296 1.01477 1.01489 1.21061 0.94871 0.96858 0.97127 1.21875 1.01932 0.94941 1.01536 1.21578 0.97627 0.94245 0.98227 0.94786 1.21616 0.92715 1.01899 0.98109 1.21894 1.02432 0.95031 0.98176 1.22015 0.77607 0.98358 1.04065 1.48120 1.08277 1.51209 1.26323 1.18552 0.85895 0.79034 0.80967 1.90725 1.16625 1.65301 1.74127 1.19119 1.07658 1.05940 0.89657 1.21212 0.91373 0.91555 1.01160 1.21220 1.04167 1.02882 0.91393 1.21418 0.93213 0.93895 0.98146 1.21310 1.04391 1.01330 0.99034 1.19615 0.88123 0.88625 0.93400 1.83598 1.53616 1.50019 1.26897 1.20813 1.31070 1.16127 0.79370 0.88822 1.24966 0.96993 0.97678 0.97634 1.69667 1.38930 1.32017 1.14335 0.85568 0.79057 0.79030 0.79325 1.19246 1.18320 1.20683 1.21793 0.98274 0.92324 0.88488 0.94890 0.90897 0.93295 0.88675 0.94423 0.90930 0.91454 0.88960 0.90239 0.87534 0.94928 0.89976 0.87624 0.82463 0.81420 0.82968 0.86625 0.90395 0.88592 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.85 71.98 0.64 -2.72 16 2 C -0.08 -1.47 2.51 -10.80 -0.03 -1.50 16 3 C -0.15 -2.34 8.85 71.98 0.64 -1.70 16 4 C -0.10 -2.31 1.92 -10.71 -0.02 -2.33 16 5 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 6 C -0.11 -1.84 4.86 30.62 0.15 -1.69 16 7 C -0.14 -2.83 6.06 30.53 0.19 -2.64 16 8 C 0.10 2.29 5.54 86.22 0.48 2.77 16 9 N -0.61 -19.41 2.98 -823.51 -2.45 -21.86 16 10 C 0.57 24.43 6.82 86.69 0.59 25.02 16 11 O -0.59 -31.52 16.18 -0.95 -0.02 -31.53 16 12 C -0.22 -9.00 4.61 -19.99 -0.09 -9.09 16 13 C -0.03 -1.00 7.79 22.52 0.18 -0.82 16 14 C -0.18 -4.49 10.02 22.25 0.22 -4.26 16 15 C -0.05 -1.49 10.03 22.30 0.22 -1.27 16 16 C -0.24 -10.35 9.16 22.36 0.20 -10.15 16 17 C 0.15 7.57 6.65 22.91 0.15 7.73 16 18 O -0.24 -13.95 7.79 -17.04 -0.13 -14.08 16 19 C -0.40 -24.46 9.95 67.93 0.68 -23.78 16 20 H 0.09 5.81 5.44 -2.91 -0.02 5.79 16 21 C 0.03 1.68 5.49 84.85 0.47 2.14 16 22 N -0.91 -55.66 13.96 21.62 0.30 -55.36 16 23 Si 0.95 50.69 28.62 68.60 1.96 52.65 16 24 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.28 -16.63 7.11 99.48 0.71 -15.92 16 27 C 0.11 3.14 5.20 86.37 0.45 3.59 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.15 6.56 -2.39 -0.02 1.14 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.96 6.41 -2.38 -0.02 0.94 16 34 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.22 6.37 -2.39 -0.02 1.20 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 2.07 5.40 -2.39 -0.01 2.06 16 40 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.16 3.29 7.76 -2.92 -0.02 3.27 16 42 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 43 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 44 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 45 H 0.29 16.12 8.31 -92.71 -0.77 15.35 16 46 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 2.06 5.61 -2.39 -0.01 2.05 16 Total: -1.00 -81.23 368.30 5.73 -75.49 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.96 Total: 15.40 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 5.11 Total: -20.72 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -2.15 Total: -77.22 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.15 Total: -45.61 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.96 Total: 52.65 kcal Total: -81.23 5.73 -75.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781794804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.002 kcal (2) G-P(sol) polarization free energy of solvation -81.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds