Wall clock time and date at job start Tue Mar 31 2020 11:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46973 * 2 1 4 4 C 1.52999 * 109.47466 * 240.00117 * 2 1 3 5 5 C 1.53000 * 109.47386 * 119.99472 * 2 1 3 6 6 H 1.08994 * 110.88955 * 183.62912 * 5 2 1 7 7 C 1.55160 * 111.00178 * 59.74770 * 5 2 1 8 8 C 1.54315 * 103.10545 * 206.29734 * 7 5 2 9 9 N 1.47488 * 107.03196 * 22.24240 * 8 7 5 10 10 C 1.34784 * 125.58898 * 181.00362 * 9 8 7 11 11 O 1.21591 * 119.99618 * 184.50752 * 10 9 8 12 12 C 1.47529 * 120.00270 * 4.50769 * 10 9 8 13 13 C 1.39674 * 120.19482 * 314.07703 * 12 10 9 14 14 C 1.37832 * 119.91785 * 180.02562 * 13 12 10 15 15 C 1.38569 * 120.32341 * 0.02562 * 14 13 12 16 16 C 1.38030 * 120.40347 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.07043 * 359.67526 * 16 15 14 18 18 O 1.35523 * 120.16454 * 180.29680 * 17 16 15 19 19 C 1.34810 * 116.99639 * 6.47128 * 18 17 16 20 20 H 1.08004 * 120.00173 * 5.81747 * 19 18 17 21 21 C 1.38701 * 120.00062 * 185.81523 * 19 18 17 22 22 N 1.31517 * 119.99631 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00245 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46661 * 60.00480 * 23 21 19 25 25 H 1.48497 * 109.47182 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47165 * 300.00702 * 23 21 19 27 27 C 1.47424 * 108.76087 * 1.02550 * 9 8 7 28 28 H 1.08994 * 109.47493 * 304.91823 * 1 2 3 29 29 H 1.09005 * 109.47148 * 64.92567 * 1 2 3 30 30 H 1.09003 * 109.46796 * 184.91714 * 1 2 3 31 31 H 1.08998 * 109.47616 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46929 * 300.00345 * 3 2 1 33 33 H 1.09006 * 109.46991 * 59.99268 * 3 2 1 34 34 H 1.09001 * 109.47019 * 299.99716 * 4 2 1 35 35 H 1.08993 * 109.46859 * 59.99816 * 4 2 1 36 36 H 1.08998 * 109.46873 * 179.97438 * 4 2 1 37 37 H 1.09000 * 110.72086 * 324.75732 * 7 5 2 38 38 H 1.09008 * 110.71405 * 87.84483 * 7 5 2 39 39 H 1.09000 * 109.88714 * 141.69855 * 8 7 5 40 40 H 1.08999 * 109.88643 * 262.86937 * 8 7 5 41 41 H 1.07998 * 120.04027 * 0.03300 * 13 12 10 42 42 H 1.07997 * 119.83483 * 179.97438 * 14 13 12 43 43 H 1.07995 * 119.80112 * 179.97438 * 15 14 13 44 44 H 1.07995 * 119.96184 * 179.97438 * 16 15 14 45 45 H 0.96997 * 119.99960 * 179.97438 * 22 21 19 46 46 H 1.08995 * 110.36343 * 217.05097 * 27 9 8 47 47 H 1.09006 * 110.36612 * 94.73197 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.1277 -0.6791 1.3054 7 6 1.5374 -2.1885 1.2885 8 6 1.5305 -2.5158 2.7966 9 7 1.4578 -1.2310 3.5171 10 6 1.4497 -1.0823 4.8567 11 8 1.3043 0.0217 5.3449 12 6 1.6173 -2.2591 5.7306 13 6 0.8986 -3.4298 5.4779 14 6 1.0592 -4.5256 6.2983 15 6 1.9306 -4.4722 7.3744 16 6 2.6467 -3.3218 7.6370 17 6 2.5023 -2.2103 6.8177 18 8 3.2090 -1.0818 7.0703 19 6 4.1335 -1.1449 8.0493 20 1 4.3498 -2.0887 8.5278 21 6 4.8071 0.0022 8.4421 22 7 4.5434 1.1515 7.8597 23 14 6.0878 -0.0851 9.7992 24 1 7.1715 -1.0178 9.3978 25 1 6.6576 1.2666 10.0298 26 1 5.4520 -0.5737 11.0491 27 6 1.3949 -0.1371 2.5308 28 1 -0.3634 0.5882 0.8426 29 1 -0.3634 0.4355 -0.9309 30 1 -0.3633 -1.0239 0.0881 31 1 3.1299 1.4427 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1391 36 1 3.1300 -0.7207 -1.2494 37 1 0.5325 -2.2632 0.8730 38 1 2.2238 -2.8456 0.7544 39 1 0.6628 -3.1294 3.0388 40 1 2.4462 -3.0422 3.0659 41 1 0.2181 -3.4763 4.6406 42 1 0.5026 -5.4300 6.1019 43 1 2.0496 -5.3357 8.0120 44 1 3.3235 -3.2879 8.4779 45 1 5.0142 1.9538 8.1346 46 1 1.9627 0.7241 2.8828 47 1 0.3587 0.1428 2.3403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784569385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:21 Heat of formation + Delta-G solvation = -39.838492 kcal Electronic energy + Delta-G solvation = -27276.515786 eV Core-core repulsion = 23617.868539 eV Total energy + Delta-G solvation = -3658.647247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.15626 -39.08885 -37.63061 -36.32293 -35.34438 -32.34059 -31.11109 -30.13673 -28.94633 -28.56478 -27.46455 -27.13903 -25.39646 -24.11781 -22.07367 -21.80672 -21.31615 -19.17963 -18.42889 -18.03294 -17.16348 -16.32358 -16.19504 -15.09210 -14.77875 -14.74151 -14.47187 -14.23609 -13.99128 -13.89247 -13.69141 -13.53741 -13.35033 -13.24917 -12.59540 -12.49985 -12.26704 -12.14212 -12.09852 -11.73220 -11.69406 -11.64989 -11.35571 -11.23245 -11.16089 -11.06587 -10.89034 -10.73929 -10.49893 -10.45145 -10.42001 -10.30775 -9.61350 -8.97246 -8.86986 -8.26521 -8.09271 -7.30987 -6.44743 -4.05577 1.82599 2.32002 3.11765 3.13919 3.16525 3.42764 3.64190 3.93928 4.41584 4.52875 4.54848 4.63625 4.94319 4.98234 5.05325 5.09993 5.15073 5.32697 5.37356 5.41097 5.47764 5.53541 5.54620 5.61366 5.64618 5.73029 5.76803 5.82202 5.84880 5.87280 5.98479 6.00510 6.08776 6.09164 6.13085 6.13929 6.18860 6.29556 6.42359 6.57892 6.64416 6.83486 6.97468 7.07322 7.26579 7.29736 7.70061 7.93332 8.08698 8.95395 8.99106 9.66167 10.70407 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003914 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.386675 B = 7151.226381 C = 8600.075992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.091 4.091 6 H 0.084 0.916 7 C -0.130 4.130 8 C 0.103 3.897 9 N -0.625 5.625 10 C 0.587 3.413 11 O -0.515 6.515 12 C -0.214 4.214 13 C -0.045 4.045 14 C -0.225 4.225 15 C -0.055 4.055 16 C -0.235 4.235 17 C 0.189 3.811 18 O -0.146 6.146 19 C -0.401 4.401 20 H 0.093 0.907 21 C 0.044 3.956 22 N -0.842 5.842 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.111 3.889 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.272 0.728 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 -7.300 -15.348 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.202 4.202 4 C -0.197 4.197 5 C -0.110 4.110 6 H 0.103 0.897 7 C -0.168 4.168 8 C -0.020 4.020 9 N -0.362 5.362 10 C 0.377 3.623 11 O -0.389 6.389 12 C -0.219 4.219 13 C -0.063 4.063 14 C -0.244 4.244 15 C -0.074 4.074 16 C -0.254 4.254 17 C 0.131 3.869 18 O -0.046 6.046 19 C -0.477 4.477 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.474 5.474 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.011 4.011 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.307 -6.145 -15.041 17.092 hybrid contribution 0.682 -0.216 0.784 1.061 sum -4.624 -6.361 -14.257 16.282 Atomic orbital electron populations 1.22057 0.94642 1.02125 1.01771 1.20409 0.95647 0.95441 0.94219 1.21913 1.01191 0.95194 1.01916 1.21865 1.01035 1.00232 0.96562 1.22413 1.00547 0.94544 0.93541 0.89750 1.22813 1.02165 0.96520 0.95309 1.22162 1.01781 0.86894 0.91148 1.48470 1.75757 1.07197 1.04771 1.17875 0.75756 0.88893 0.79744 1.90824 1.47673 1.26782 1.73603 1.18712 1.07587 0.95495 1.00069 1.20849 0.96591 0.91154 0.97736 1.20470 1.05380 0.98744 0.99825 1.20886 0.94200 0.96501 0.95782 1.21132 1.06671 0.94115 1.03504 1.19205 0.89264 0.87368 0.91109 1.84065 1.43057 1.28305 1.49123 1.21370 1.14601 0.96491 1.15263 0.88941 1.25367 0.98470 0.94122 0.98342 1.70083 1.39238 0.99035 1.39082 0.85786 0.79663 0.78060 0.79946 1.19394 1.20165 1.19356 1.22275 1.00548 0.91152 0.87174 0.92017 0.92796 0.92189 0.92525 0.92746 0.92197 0.92462 0.92804 0.92654 0.90291 0.90373 0.91509 0.91418 0.86569 0.87235 0.87177 0.85071 0.91790 0.90710 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.75 37.16 0.29 -1.02 16 2 C -0.06 -0.53 0.60 -154.51 -0.09 -0.62 16 3 C -0.14 -1.40 8.33 37.16 0.31 -1.09 16 4 C -0.14 -1.10 8.26 37.16 0.31 -0.79 16 5 C -0.09 -1.05 2.39 -88.47 -0.21 -1.26 16 6 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.13 -1.32 5.18 -24.90 -0.13 -1.45 16 8 C 0.10 1.39 5.63 -2.81 -0.02 1.37 16 9 N -0.62 -11.22 3.34 -171.38 -0.57 -11.79 16 10 C 0.59 13.65 7.17 -12.47 -0.09 13.56 16 11 O -0.51 -14.46 16.70 -6.53 -0.11 -14.57 16 12 C -0.21 -4.82 5.46 -104.81 -0.57 -5.39 16 13 C -0.04 -0.80 8.52 -39.19 -0.33 -1.14 16 14 C -0.23 -3.77 10.02 -39.61 -0.40 -4.16 16 15 C -0.06 -0.99 10.03 -39.54 -0.40 -1.39 16 16 C -0.23 -5.13 9.12 -39.44 -0.36 -5.49 16 17 C 0.19 4.77 6.63 -38.60 -0.26 4.51 16 18 O -0.15 -4.36 8.72 -11.02 -0.10 -4.46 16 19 C -0.40 -11.48 9.43 30.90 0.29 -11.19 16 20 H 0.09 2.39 5.32 -52.48 -0.28 2.11 16 21 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 22 N -0.84 -25.63 13.67 55.48 0.76 -24.87 16 23 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 C 0.11 1.71 5.47 -2.53 -0.01 1.69 16 28 H 0.06 0.60 6.27 -51.93 -0.33 0.28 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 5.97 -51.93 -0.31 0.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.64 7.50 -51.93 -0.39 0.25 16 34 H 0.06 0.42 7.28 -51.93 -0.38 0.04 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.70 5.83 -51.93 -0.30 0.40 16 38 H 0.08 0.67 8.11 -51.92 -0.42 0.25 16 39 H 0.07 0.80 5.91 -51.93 -0.31 0.50 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.12 1.73 5.79 -52.49 -0.30 1.43 16 42 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.13 2.82 5.73 -52.49 -0.30 2.52 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 47 H 0.07 0.96 5.64 -51.93 -0.29 0.66 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -34.75 367.57 -8.24 -42.98 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.97 Total: 4.20 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.77 Total: -12.71 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.19 Total: -36.67 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.21 Total: -19.03 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.75 -8.24 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784569385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.145 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds