Wall clock time and date at job start Tue Mar 31 2020 11:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46973 * 2 1 4 4 C 1.52999 * 109.47466 * 240.00117 * 2 1 3 5 5 C 1.53000 * 109.47386 * 119.99472 * 2 1 3 6 6 H 1.08994 * 110.88955 * 183.62912 * 5 2 1 7 7 C 1.55160 * 111.00178 * 59.74770 * 5 2 1 8 8 C 1.54315 * 103.10545 * 206.29734 * 7 5 2 9 9 N 1.47488 * 107.03196 * 22.24240 * 8 7 5 10 10 C 1.34784 * 125.58898 * 181.00362 * 9 8 7 11 11 O 1.21591 * 119.99618 * 184.50752 * 10 9 8 12 12 C 1.47529 * 120.00270 * 4.50769 * 10 9 8 13 13 C 1.39674 * 120.19482 * 314.07703 * 12 10 9 14 14 C 1.37832 * 119.91785 * 180.02562 * 13 12 10 15 15 C 1.38569 * 120.32341 * 0.02562 * 14 13 12 16 16 C 1.38030 * 120.40347 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.07043 * 359.67526 * 16 15 14 18 18 O 1.35523 * 120.16454 * 180.29680 * 17 16 15 19 19 C 1.34810 * 116.99639 * 6.47128 * 18 17 16 20 20 H 1.08004 * 120.00173 * 5.81747 * 19 18 17 21 21 C 1.38701 * 120.00062 * 185.81523 * 19 18 17 22 22 N 1.31517 * 119.99631 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00245 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46661 * 60.00480 * 23 21 19 25 25 H 1.48497 * 109.47182 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47165 * 300.00702 * 23 21 19 27 27 C 1.47424 * 108.76087 * 1.02550 * 9 8 7 28 28 H 1.08994 * 109.47493 * 304.91823 * 1 2 3 29 29 H 1.09005 * 109.47148 * 64.92567 * 1 2 3 30 30 H 1.09003 * 109.46796 * 184.91714 * 1 2 3 31 31 H 1.08998 * 109.47616 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46929 * 300.00345 * 3 2 1 33 33 H 1.09006 * 109.46991 * 59.99268 * 3 2 1 34 34 H 1.09001 * 109.47019 * 299.99716 * 4 2 1 35 35 H 1.08993 * 109.46859 * 59.99816 * 4 2 1 36 36 H 1.08998 * 109.46873 * 179.97438 * 4 2 1 37 37 H 1.09000 * 110.72086 * 324.75732 * 7 5 2 38 38 H 1.09008 * 110.71405 * 87.84483 * 7 5 2 39 39 H 1.09000 * 109.88714 * 141.69855 * 8 7 5 40 40 H 1.08999 * 109.88643 * 262.86937 * 8 7 5 41 41 H 1.07998 * 120.04027 * 0.03300 * 13 12 10 42 42 H 1.07997 * 119.83483 * 179.97438 * 14 13 12 43 43 H 1.07995 * 119.80112 * 179.97438 * 15 14 13 44 44 H 1.07995 * 119.96184 * 179.97438 * 16 15 14 45 45 H 0.96997 * 119.99960 * 179.97438 * 22 21 19 46 46 H 1.08995 * 110.36343 * 217.05097 * 27 9 8 47 47 H 1.09006 * 110.36612 * 94.73197 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.1277 -0.6791 1.3054 7 6 1.5374 -2.1885 1.2885 8 6 1.5305 -2.5158 2.7966 9 7 1.4578 -1.2310 3.5171 10 6 1.4497 -1.0823 4.8567 11 8 1.3043 0.0217 5.3449 12 6 1.6173 -2.2591 5.7306 13 6 0.8986 -3.4298 5.4779 14 6 1.0592 -4.5256 6.2983 15 6 1.9306 -4.4722 7.3744 16 6 2.6467 -3.3218 7.6370 17 6 2.5023 -2.2103 6.8177 18 8 3.2090 -1.0818 7.0703 19 6 4.1335 -1.1449 8.0493 20 1 4.3498 -2.0887 8.5278 21 6 4.8071 0.0022 8.4421 22 7 4.5434 1.1515 7.8597 23 14 6.0878 -0.0851 9.7992 24 1 7.1715 -1.0178 9.3978 25 1 6.6576 1.2666 10.0298 26 1 5.4520 -0.5737 11.0491 27 6 1.3949 -0.1371 2.5308 28 1 -0.3634 0.5882 0.8426 29 1 -0.3634 0.4355 -0.9309 30 1 -0.3633 -1.0239 0.0881 31 1 3.1299 1.4427 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1391 36 1 3.1300 -0.7207 -1.2494 37 1 0.5325 -2.2632 0.8730 38 1 2.2238 -2.8456 0.7544 39 1 0.6628 -3.1294 3.0388 40 1 2.4462 -3.0422 3.0659 41 1 0.2181 -3.4763 4.6406 42 1 0.5026 -5.4300 6.1019 43 1 2.0496 -5.3357 8.0120 44 1 3.3235 -3.2879 8.4779 45 1 5.0142 1.9538 8.1346 46 1 1.9627 0.7241 2.8828 47 1 0.3587 0.1428 2.3403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784569385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:20 Heat of formation + Delta-G solvation = -62.159885 kcal Electronic energy + Delta-G solvation = -27277.483714 eV Core-core repulsion = 23617.868539 eV Total energy + Delta-G solvation = -3659.615175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59805 -40.57711 -39.21147 -38.06170 -36.59820 -34.37032 -32.61691 -31.41201 -30.62083 -29.71678 -28.19926 -27.93506 -27.41811 -25.55231 -23.55900 -23.13141 -22.63295 -20.73991 -19.93438 -19.35110 -18.76694 -17.98820 -17.42676 -16.72255 -16.45273 -16.31656 -15.67432 -15.64791 -15.34693 -15.19782 -14.99481 -14.87247 -14.69014 -14.35572 -14.28267 -13.85131 -13.63085 -13.57767 -13.05468 -13.01655 -12.93619 -12.70406 -12.60039 -12.51973 -12.47108 -12.35060 -12.19504 -12.11931 -11.92798 -11.53875 -11.35082 -11.30403 -11.20049 -10.85592 -10.76297 -9.87675 -9.57978 -9.07072 -8.49269 -6.20999 0.20119 0.69084 1.30098 1.43324 1.48609 1.77153 2.10749 2.13876 2.80523 3.13659 3.37728 3.42131 3.59967 3.73818 3.85841 4.04275 4.08613 4.15950 4.26304 4.28380 4.35683 4.42420 4.53474 4.56654 4.62922 4.71008 4.77384 4.82766 4.88265 4.89807 4.95044 5.02329 5.03604 5.05549 5.12311 5.13611 5.15657 5.20861 5.27148 5.35366 5.45515 5.50337 5.55051 5.60740 5.61333 5.67568 5.93016 6.14859 6.51651 6.91061 7.25851 7.74345 8.72530 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003914 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.386675 B = 7151.226381 C = 8600.075992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.083 4.083 6 H 0.069 0.931 7 C -0.116 4.116 8 C 0.092 3.908 9 N -0.621 5.621 10 C 0.573 3.427 11 O -0.587 6.587 12 C -0.231 4.231 13 C -0.038 4.038 14 C -0.191 4.191 15 C -0.045 4.045 16 C -0.250 4.250 17 C 0.145 3.855 18 O -0.212 6.212 19 C -0.424 4.424 20 H 0.108 0.892 21 C -0.024 4.024 22 N -0.915 5.915 23 Si 1.024 2.976 24 H -0.252 1.252 25 H -0.273 1.273 26 H -0.254 1.254 27 C 0.104 3.896 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.125 0.875 45 H 0.272 0.728 46 H 0.031 0.969 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 -12.332 -17.353 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 C -0.205 4.205 4 C -0.193 4.193 5 C -0.102 4.102 6 H 0.088 0.912 7 C -0.153 4.153 8 C -0.029 4.029 9 N -0.355 5.355 10 C 0.364 3.636 11 O -0.467 6.467 12 C -0.235 4.235 13 C -0.056 4.056 14 C -0.209 4.209 15 C -0.063 4.063 16 C -0.270 4.270 17 C 0.092 3.908 18 O -0.116 6.116 19 C -0.499 4.499 20 H 0.125 0.875 21 C -0.222 4.222 22 N -0.552 5.552 23 Si 0.842 3.158 24 H -0.176 1.176 25 H -0.198 1.198 26 H -0.178 1.178 27 C -0.018 4.018 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.173 0.827 42 H 0.184 0.816 43 H 0.174 0.826 44 H 0.142 0.858 45 H 0.080 0.920 46 H 0.050 0.950 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.792 -11.287 -17.121 21.602 hybrid contribution 0.868 1.053 1.206 1.821 sum -5.923 -10.235 -15.914 19.827 Atomic orbital electron populations 1.22052 0.93770 1.02777 1.01864 1.20398 0.96258 0.94713 0.93815 1.21947 1.00863 0.96018 1.01685 1.21835 1.00892 1.00902 0.95630 1.22374 0.99461 0.96005 0.92357 0.91239 1.22856 1.04324 0.95121 0.92978 1.22553 1.02576 0.84840 0.92924 1.48549 1.73169 1.10066 1.03674 1.18274 0.75324 0.88347 0.81626 1.90773 1.51295 1.29238 1.75391 1.19116 1.07902 0.96941 0.99580 1.21319 0.95685 0.89594 0.98998 1.21181 1.02940 0.99674 0.97125 1.21428 0.92431 0.96048 0.96362 1.21295 1.07758 0.94760 1.03154 1.19952 0.90454 0.87595 0.92842 1.84052 1.45458 1.31017 1.51114 1.21946 1.15214 0.97473 1.15315 0.87468 1.26799 1.00983 0.93275 1.01179 1.70286 1.42237 1.00182 1.42447 0.84595 0.76485 0.78436 0.76281 1.17566 1.19811 1.17758 1.22472 1.01140 0.89754 0.88403 0.93792 0.91240 0.90821 0.93139 0.91025 0.94367 0.90930 0.91596 0.92964 0.87728 0.87580 0.88887 0.92089 0.82737 0.81575 0.82588 0.85776 0.91951 0.94986 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 7.75 71.98 0.56 -1.68 16 2 C -0.05 -0.87 0.60 -52.18 -0.03 -0.91 16 3 C -0.15 -2.90 8.33 71.98 0.60 -2.30 16 4 C -0.14 -1.68 8.26 71.98 0.59 -1.08 16 5 C -0.08 -1.85 2.39 -9.40 -0.02 -1.88 16 6 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 7 C -0.12 -1.93 5.18 31.78 0.16 -1.77 16 8 C 0.09 2.26 5.63 86.64 0.49 2.75 16 9 N -0.62 -22.96 3.34 -814.37 -2.72 -25.68 16 10 C 0.57 28.41 7.17 86.69 0.62 29.03 16 11 O -0.59 -36.41 16.70 7.30 0.12 -36.28 16 12 C -0.23 -10.62 5.46 -19.99 -0.11 -10.73 16 13 C -0.04 -1.23 8.52 22.52 0.19 -1.03 16 14 C -0.19 -5.25 10.02 22.25 0.22 -5.03 16 15 C -0.04 -1.41 10.03 22.30 0.22 -1.19 16 16 C -0.25 -10.93 9.12 22.36 0.20 -10.73 16 17 C 0.15 7.72 6.63 22.91 0.15 7.87 16 18 O -0.21 -13.88 8.72 -8.74 -0.08 -13.96 16 19 C -0.42 -26.07 9.43 67.93 0.64 -25.43 16 20 H 0.11 5.88 5.32 -2.91 -0.02 5.87 16 21 C -0.02 -1.45 5.49 84.85 0.47 -0.99 16 22 N -0.91 -60.91 13.67 21.62 0.30 -60.62 16 23 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 27 C 0.10 3.41 5.47 86.85 0.48 3.88 16 28 H 0.04 0.82 6.27 -2.39 -0.01 0.81 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.92 5.97 -2.39 -0.01 0.90 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 0.90 7.50 -2.38 -0.02 0.88 16 34 H 0.07 0.70 7.28 -2.39 -0.02 0.69 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 1.29 5.83 -2.39 -0.01 1.28 16 38 H 0.11 1.30 8.11 -2.38 -0.02 1.28 16 39 H 0.09 1.80 5.91 -2.39 -0.01 1.79 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.16 3.78 5.79 -2.91 -0.02 3.77 16 42 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.12 5.46 5.73 -2.91 -0.02 5.45 16 45 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 46 H 0.03 1.29 8.02 -2.39 -0.02 1.28 16 47 H 0.08 2.39 5.64 -2.38 -0.01 2.38 16 Total: -1.00 -90.61 367.57 6.06 -84.55 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.97 Total: 26.42 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.44 Total: -21.21 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.42 Total: -86.30 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: 0.05 Total: -50.24 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -90.61 6.06 -84.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784569385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.388 kcal (2) G-P(sol) polarization free energy of solvation -90.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds