Wall clock time and date at job start Tue Mar 31 2020 11:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33016 * 119.99959 * 2 1 4 4 C 1.50694 * 120.00252 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47172 * 100.92033 * 4 3 2 6 6 C 1.47071 * 119.99745 * 0.02562 * 3 2 1 7 7 O 1.21632 * 120.00101 * 347.70831 * 6 3 2 8 8 N 1.34780 * 120.00017 * 167.71545 * 6 3 2 9 9 C 1.46500 * 119.99591 * 6.94815 * 8 6 3 10 10 C 1.50703 * 109.46961 * 274.33778 * 9 8 6 11 11 H 1.07997 * 119.99902 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99745 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00126 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99849 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47148 * 89.99696 * 14 12 10 16 16 H 1.48494 * 109.47267 * 210.00156 * 14 12 10 17 17 H 1.48509 * 109.47244 * 329.99732 * 14 12 10 18 18 C 1.40017 * 120.00037 * 186.67631 * 8 6 3 19 19 C 1.38868 * 120.01598 * 188.59025 * 18 8 6 20 20 C 1.38081 * 119.98158 * 179.74250 * 19 18 8 21 21 C 1.38724 * 120.01685 * 0.52892 * 20 19 18 22 22 O 1.35971 * 119.98256 * 179.70623 * 21 20 19 23 23 C 1.42900 * 116.99916 * 0.02562 * 22 21 20 24 24 C 1.53005 * 109.46861 * 180.02562 * 23 22 21 25 25 C 1.38723 * 120.03426 * 359.72051 * 21 20 19 26 26 C 1.38078 * 120.01900 * 0.02562 * 25 21 20 27 27 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46869 * 299.99927 * 1 2 3 29 29 H 1.09000 * 109.47076 * 59.99818 * 1 2 3 30 30 H 1.07997 * 119.99915 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47514 * 220.92147 * 4 3 2 32 32 H 1.09005 * 109.47016 * 340.92281 * 4 3 2 33 33 H 1.09000 * 109.47266 * 170.84814 * 5 4 3 34 34 H 1.08998 * 109.46979 * 290.85266 * 5 4 3 35 35 H 1.09004 * 109.46993 * 50.84612 * 5 4 3 36 36 H 1.08995 * 109.47538 * 34.34090 * 9 8 6 37 37 H 1.09003 * 109.46943 * 154.34185 * 9 8 6 38 38 H 0.96995 * 120.00057 * 179.97438 * 13 12 10 39 39 H 1.07999 * 120.00752 * 359.97094 * 19 18 8 40 40 H 1.08003 * 119.99227 * 180.25037 * 20 19 18 41 41 H 1.08995 * 109.47258 * 299.99985 * 23 22 21 42 42 H 1.08999 * 109.46921 * 60.00884 * 23 22 21 43 43 H 1.09002 * 109.46743 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47587 * 300.00111 * 24 23 22 45 45 H 1.08999 * 109.46834 * 60.00583 * 24 23 22 46 46 H 1.08004 * 119.99242 * 180.02562 * 25 21 20 47 47 H 1.08002 * 120.01230 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6791 1.1520 0.0006 5 6 4.1896 1.4250 -1.4157 6 6 1.4367 2.4256 0.0006 7 8 0.2412 2.4377 -0.2232 8 7 2.0875 3.5794 0.2489 9 6 3.5477 3.5859 0.3673 10 6 3.9384 3.2456 1.7825 11 1 3.1754 3.0441 2.5197 12 6 5.2701 3.1913 2.1359 13 7 6.1992 3.4361 1.2380 14 14 5.7544 2.7688 3.8898 15 1 5.9167 1.2982 4.0179 16 1 7.0363 3.4393 4.2246 17 1 4.6951 3.2329 4.8214 18 6 1.3685 4.7728 0.3881 19 6 2.0421 5.9847 0.4654 20 6 1.3320 7.1616 0.5972 21 6 -0.0533 7.1326 0.6636 22 8 -0.7515 8.2914 0.7995 23 6 0.0061 9.5012 0.8669 24 6 -0.9445 10.6904 1.0187 25 6 -0.7267 5.9219 0.5917 26 6 -0.0184 4.7446 0.4545 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 4.0422 1.9287 0.6736 32 1 4.0423 0.1809 0.3368 33 1 5.2673 1.5864 -1.3886 34 1 3.9661 0.5699 -2.0535 35 1 3.6991 2.3133 -1.8138 36 1 3.9708 2.8478 -0.3139 37 1 3.9284 4.5752 0.1132 38 1 7.1360 3.3983 1.4867 39 1 3.1208 6.0070 0.4186 40 1 1.8556 8.1046 0.6533 41 1 0.6780 9.4619 1.7242 42 1 0.5892 9.6161 -0.0469 43 1 -0.3666 11.6133 1.0696 44 1 -1.6168 10.7300 0.1616 45 1 -1.5272 10.5754 1.9326 46 1 -1.8053 5.9001 0.6430 47 1 -0.5427 3.8020 0.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789759856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:09 Heat of formation + Delta-G solvation = 27.827488 kcal Electronic energy + Delta-G solvation = -27492.987262 eV Core-core repulsion = 23837.274232 eV Total energy + Delta-G solvation = -3655.713030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55344 -39.39308 -37.13074 -36.26475 -34.58065 -32.84879 -31.76115 -31.24591 -30.44801 -28.44206 -27.71722 -26.32646 -24.08943 -23.26651 -22.75746 -21.78679 -21.17641 -20.48154 -17.99107 -17.93773 -16.87388 -16.57695 -15.93359 -15.50457 -15.07288 -14.78250 -14.74020 -14.50480 -13.90499 -13.51296 -13.35098 -13.19547 -13.00669 -12.85464 -12.78025 -12.51997 -12.38318 -12.26960 -12.00383 -11.81240 -11.70246 -11.44891 -11.37655 -11.21183 -11.13451 -10.79513 -10.67850 -10.52545 -10.42651 -10.21602 -9.92968 -9.03863 -8.83502 -8.74766 -8.52578 -8.43051 -8.22179 -6.87943 -6.36009 -4.43463 1.68518 1.87659 2.25654 3.13762 3.21869 3.26189 3.45392 3.71099 3.87508 4.18523 4.46229 4.90656 4.90871 4.97286 5.14813 5.20864 5.33347 5.39123 5.47289 5.49226 5.69729 5.72992 5.80370 5.89337 5.92964 5.99508 6.03544 6.11994 6.15937 6.24298 6.25933 6.40129 6.55217 6.55740 6.70350 6.75407 6.78306 6.87128 6.88445 7.04770 7.09771 7.16948 7.21303 7.54079 7.64077 7.68087 7.85746 7.88911 8.16963 8.61438 8.84599 9.18595 10.64994 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.004694 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.255513 B = 5963.273308 C = 7684.005682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.109 4.109 3 C -0.143 4.143 4 C -0.181 4.181 5 C -0.138 4.138 6 C 0.552 3.448 7 O -0.545 6.545 8 N -0.527 5.527 9 C 0.166 3.834 10 C -0.536 4.536 11 H 0.066 0.934 12 C 0.070 3.930 13 N -0.878 5.878 14 Si 0.897 3.103 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.141 3.859 19 C -0.113 4.113 20 C -0.186 4.186 21 C 0.084 3.916 22 O -0.323 6.323 23 C 0.055 3.945 24 C -0.150 4.150 25 C -0.134 4.134 26 C -0.133 4.133 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.200 0.800 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.041 0.959 38 H 0.270 0.730 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.123 0.877 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.705 4.094 -2.365 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.129 4.129 3 C -0.145 4.145 4 C -0.215 4.215 5 C -0.195 4.195 6 C 0.346 3.654 7 O -0.428 6.428 8 N -0.245 5.245 9 C 0.048 3.952 10 C -0.574 4.574 11 H 0.084 0.916 12 C -0.135 4.135 13 N -0.514 5.514 14 Si 0.723 3.277 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.196 1.196 18 C 0.045 3.955 19 C -0.133 4.133 20 C -0.205 4.205 21 C 0.039 3.961 22 O -0.238 6.238 23 C -0.021 4.021 24 C -0.207 4.207 25 C -0.153 4.153 26 C -0.153 4.153 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.215 0.785 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.155 0.845 40 H 0.140 0.860 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.141 0.859 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.225 4.088 -2.514 8.673 hybrid contribution 0.861 -0.052 1.037 1.349 sum -6.363 4.036 -1.477 7.679 Atomic orbital electron populations 1.20936 0.92536 1.00076 1.03641 1.23406 0.96406 0.96640 0.96448 1.21470 0.97313 0.91863 1.03887 1.22729 0.89966 1.07888 1.00920 1.21730 1.01603 0.99844 0.96357 1.18621 0.86208 0.84414 0.76171 1.90408 1.15408 1.86658 1.50368 1.45853 1.10323 1.04614 1.63751 1.21523 0.72553 1.01700 0.99446 1.21235 0.92457 1.48410 0.95264 0.91589 1.24957 0.96088 0.94490 0.98010 1.69910 1.01021 1.46655 1.33827 0.86480 0.78226 0.78928 0.84035 1.20044 1.20786 1.19555 1.17990 0.91182 0.86261 1.00035 1.20863 1.00745 0.90223 1.01497 1.20917 0.92572 0.98649 1.08342 1.18928 0.90408 0.85769 1.00957 1.86015 1.35861 1.12927 1.88985 1.22664 0.94834 0.83417 1.01139 1.21758 1.00007 0.95838 1.03136 1.20322 0.99748 0.89440 1.05779 1.22278 0.92946 1.00244 0.99794 0.93783 0.91325 0.90138 0.86515 0.78510 0.93091 0.91736 0.94504 0.93108 0.87249 0.94133 0.91981 0.84482 0.85955 0.92315 0.92389 0.90726 0.91751 0.91716 0.85855 0.80623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.46 36.01 0.30 -1.50 16 2 C -0.11 -1.84 9.94 -36.12 -0.36 -2.20 16 3 C -0.14 -2.78 5.14 -102.86 -0.53 -3.31 16 4 C -0.18 -3.59 5.21 -27.88 -0.15 -3.73 16 5 C -0.14 -2.52 8.52 37.16 0.32 -2.20 16 6 C 0.55 11.72 7.38 -12.68 -0.09 11.63 16 7 O -0.55 -11.54 9.80 5.25 0.05 -11.49 16 8 N -0.53 -11.50 2.69 -120.83 -0.33 -11.83 16 9 C 0.17 3.77 4.28 -5.19 -0.02 3.75 16 10 C -0.54 -13.12 7.15 -34.44 -0.25 -13.36 16 11 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 12 C 0.07 1.71 5.00 -17.82 -0.09 1.62 16 13 N -0.88 -21.87 13.29 55.43 0.74 -21.13 16 14 Si 0.90 19.46 29.54 -169.99 -5.02 14.44 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.14 2.97 6.48 -83.65 -0.54 2.42 16 19 C -0.11 -2.21 9.28 -39.41 -0.37 -2.58 16 20 C -0.19 -3.19 9.03 -39.46 -0.36 -3.55 16 21 C 0.08 1.46 6.69 -39.22 -0.26 1.20 16 22 O -0.32 -5.00 10.14 -19.65 -0.20 -5.20 16 23 C 0.05 0.64 5.46 37.16 0.20 0.85 16 24 C -0.15 -1.35 10.28 37.16 0.38 -0.96 16 25 C -0.13 -2.38 9.98 -39.46 -0.39 -2.78 16 26 C -0.13 -2.63 8.95 -39.41 -0.35 -2.98 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.15 7.57 -51.93 -0.39 0.76 16 29 H 0.08 1.34 6.92 -51.93 -0.36 0.98 16 30 H 0.12 1.69 7.96 -52.49 -0.42 1.28 16 31 H 0.20 4.45 1.54 -73.16 -0.11 4.34 16 32 H 0.05 0.95 7.93 -51.93 -0.41 0.54 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.95 7.11 -51.93 -0.37 0.58 16 36 H 0.11 2.43 1.66 -60.20 -0.10 2.33 16 37 H 0.04 0.96 5.73 -51.93 -0.30 0.67 16 38 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 39 H 0.14 2.74 5.92 -52.49 -0.31 2.43 16 40 H 0.12 1.78 6.29 -52.48 -0.33 1.45 16 41 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 42 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 47 H 0.18 3.59 4.78 -54.79 -0.26 3.33 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -26.17 365.78 -8.46 -34.63 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.66 Total: 12.77 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.55 Total: -17.70 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.41 Total: -32.96 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.15 Total: -16.69 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.17 -8.46 -34.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789759856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.458 kcal (2) G-P(sol) polarization free energy of solvation -26.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds