Wall clock time and date at job start Tue Mar 31 2020 11:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33016 * 119.99959 * 2 1 4 4 C 1.50694 * 120.00252 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47172 * 100.92033 * 4 3 2 6 6 C 1.47071 * 119.99745 * 0.02562 * 3 2 1 7 7 O 1.21632 * 120.00101 * 347.70831 * 6 3 2 8 8 N 1.34780 * 120.00017 * 167.71545 * 6 3 2 9 9 C 1.46500 * 119.99591 * 6.94815 * 8 6 3 10 10 C 1.50703 * 109.46961 * 274.33778 * 9 8 6 11 11 H 1.07997 * 119.99902 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99745 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00126 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99849 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47148 * 89.99696 * 14 12 10 16 16 H 1.48494 * 109.47267 * 210.00156 * 14 12 10 17 17 H 1.48509 * 109.47244 * 329.99732 * 14 12 10 18 18 C 1.40017 * 120.00037 * 186.67631 * 8 6 3 19 19 C 1.38868 * 120.01598 * 188.59025 * 18 8 6 20 20 C 1.38081 * 119.98158 * 179.74250 * 19 18 8 21 21 C 1.38724 * 120.01685 * 0.52892 * 20 19 18 22 22 O 1.35971 * 119.98256 * 179.70623 * 21 20 19 23 23 C 1.42900 * 116.99916 * 0.02562 * 22 21 20 24 24 C 1.53005 * 109.46861 * 180.02562 * 23 22 21 25 25 C 1.38723 * 120.03426 * 359.72051 * 21 20 19 26 26 C 1.38078 * 120.01900 * 0.02562 * 25 21 20 27 27 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46869 * 299.99927 * 1 2 3 29 29 H 1.09000 * 109.47076 * 59.99818 * 1 2 3 30 30 H 1.07997 * 119.99915 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47514 * 220.92147 * 4 3 2 32 32 H 1.09005 * 109.47016 * 340.92281 * 4 3 2 33 33 H 1.09000 * 109.47266 * 170.84814 * 5 4 3 34 34 H 1.08998 * 109.46979 * 290.85266 * 5 4 3 35 35 H 1.09004 * 109.46993 * 50.84612 * 5 4 3 36 36 H 1.08995 * 109.47538 * 34.34090 * 9 8 6 37 37 H 1.09003 * 109.46943 * 154.34185 * 9 8 6 38 38 H 0.96995 * 120.00057 * 179.97438 * 13 12 10 39 39 H 1.07999 * 120.00752 * 359.97094 * 19 18 8 40 40 H 1.08003 * 119.99227 * 180.25037 * 20 19 18 41 41 H 1.08995 * 109.47258 * 299.99985 * 23 22 21 42 42 H 1.08999 * 109.46921 * 60.00884 * 23 22 21 43 43 H 1.09002 * 109.46743 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47587 * 300.00111 * 24 23 22 45 45 H 1.08999 * 109.46834 * 60.00583 * 24 23 22 46 46 H 1.08004 * 119.99242 * 180.02562 * 25 21 20 47 47 H 1.08002 * 120.01230 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6791 1.1520 0.0006 5 6 4.1896 1.4250 -1.4157 6 6 1.4367 2.4256 0.0006 7 8 0.2412 2.4377 -0.2232 8 7 2.0875 3.5794 0.2489 9 6 3.5477 3.5859 0.3673 10 6 3.9384 3.2456 1.7825 11 1 3.1754 3.0441 2.5197 12 6 5.2701 3.1913 2.1359 13 7 6.1992 3.4361 1.2380 14 14 5.7544 2.7688 3.8898 15 1 5.9167 1.2982 4.0179 16 1 7.0363 3.4393 4.2246 17 1 4.6951 3.2329 4.8214 18 6 1.3685 4.7728 0.3881 19 6 2.0421 5.9847 0.4654 20 6 1.3320 7.1616 0.5972 21 6 -0.0533 7.1326 0.6636 22 8 -0.7515 8.2914 0.7995 23 6 0.0061 9.5012 0.8669 24 6 -0.9445 10.6904 1.0187 25 6 -0.7267 5.9219 0.5917 26 6 -0.0184 4.7446 0.4545 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9353 -0.0004 31 1 4.0422 1.9287 0.6736 32 1 4.0423 0.1809 0.3368 33 1 5.2673 1.5864 -1.3886 34 1 3.9661 0.5699 -2.0535 35 1 3.6991 2.3133 -1.8138 36 1 3.9708 2.8478 -0.3139 37 1 3.9284 4.5752 0.1132 38 1 7.1360 3.3983 1.4867 39 1 3.1208 6.0070 0.4186 40 1 1.8556 8.1046 0.6533 41 1 0.6780 9.4619 1.7242 42 1 0.5892 9.6161 -0.0469 43 1 -0.3666 11.6133 1.0696 44 1 -1.6168 10.7300 0.1616 45 1 -1.5272 10.5754 1.9326 46 1 -1.8053 5.9001 0.6430 47 1 -0.5427 3.8020 0.3990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789759856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:08 Heat of formation + Delta-G solvation = 16.609925 kcal Electronic energy + Delta-G solvation = -27493.473692 eV Core-core repulsion = 23837.274232 eV Total energy + Delta-G solvation = -3656.199460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10170 -40.72027 -38.51530 -37.89434 -36.02069 -34.62445 -32.96863 -32.49007 -31.87156 -29.93209 -29.35096 -27.79891 -25.46720 -24.76373 -24.17533 -23.22430 -22.51862 -21.95836 -19.50893 -19.22649 -18.69750 -18.17517 -17.01469 -16.98131 -16.55825 -16.39499 -16.28184 -16.11165 -15.33956 -14.94378 -14.76022 -14.46100 -14.41305 -14.28011 -14.15023 -13.88064 -13.68594 -13.60825 -13.31379 -13.13521 -13.04572 -12.91440 -12.85648 -12.70635 -12.51457 -12.37143 -12.11137 -11.95871 -11.92882 -11.66915 -11.51848 -10.64665 -10.56606 -10.37775 -10.07273 -9.92496 -9.72090 -8.47148 -8.15372 -6.33766 0.20441 0.40435 0.80544 1.40553 1.44527 1.52313 2.11041 2.31416 2.35501 2.41445 2.94670 3.02888 3.64477 3.88797 3.97631 4.05771 4.08436 4.19038 4.34040 4.39251 4.40640 4.43220 4.51461 4.59631 4.67439 4.69111 4.76241 4.89453 4.91788 4.93427 4.96817 5.11729 5.14927 5.17923 5.24359 5.26052 5.30712 5.34913 5.42131 5.43219 5.62292 5.66404 5.67819 5.71473 5.92224 6.12574 6.19450 6.48849 6.52911 6.76537 7.21112 7.32056 8.78666 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.004694 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.255513 B = 5963.273308 C = 7684.005682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.178 4.178 4 C -0.180 4.180 5 C -0.132 4.132 6 C 0.542 3.458 7 O -0.554 6.554 8 N -0.535 5.535 9 C 0.176 3.824 10 C -0.538 4.538 11 H 0.045 0.955 12 C 0.039 3.961 13 N -0.898 5.898 14 Si 0.946 3.054 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.280 1.280 18 C 0.110 3.890 19 C -0.126 4.126 20 C -0.179 4.179 21 C 0.091 3.909 22 O -0.329 6.329 23 C 0.042 3.958 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.142 4.142 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.174 0.826 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.119 0.881 37 H 0.022 0.978 38 H 0.273 0.727 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.144 0.856 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 4.071 -2.155 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.180 4.180 4 C -0.215 4.215 5 C -0.188 4.188 6 C 0.337 3.663 7 O -0.438 6.438 8 N -0.254 5.254 9 C 0.057 3.943 10 C -0.576 4.576 11 H 0.063 0.937 12 C -0.164 4.164 13 N -0.535 5.535 14 Si 0.771 3.229 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.205 1.205 18 C 0.015 3.985 19 C -0.146 4.146 20 C -0.198 4.198 21 C 0.046 3.954 22 O -0.244 6.244 23 C -0.033 4.033 24 C -0.202 4.202 25 C -0.154 4.154 26 C -0.162 4.162 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.166 0.834 31 H 0.190 0.810 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.136 0.864 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.161 0.839 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.832 4.081 -2.306 9.127 hybrid contribution 0.937 0.022 0.959 1.341 sum -6.895 4.103 -1.347 8.136 Atomic orbital electron populations 1.20930 0.91747 1.01967 1.02365 1.23836 0.97123 0.96838 0.92246 1.21457 0.97145 0.91948 1.07495 1.22528 0.90473 1.07415 1.01080 1.21641 1.00837 1.00265 0.96103 1.19023 0.86433 0.84892 0.75987 1.90393 1.15573 1.86880 1.50987 1.45866 1.09917 1.05330 1.64279 1.21380 0.73430 1.00630 0.98828 1.21195 0.92227 1.48601 0.95590 0.93658 1.25442 0.95918 0.94441 1.00629 1.69964 1.01221 1.47294 1.34977 0.85729 0.77616 0.79028 0.80514 1.19234 1.20237 1.20518 1.18311 0.91916 0.86550 1.01757 1.20883 1.00345 0.90855 1.02527 1.21155 0.92809 0.98866 1.07005 1.18972 0.90373 0.86507 0.99576 1.86031 1.36555 1.13314 1.88500 1.23053 0.95736 0.82613 1.01892 1.21786 0.99829 0.95485 1.03123 1.20525 1.00745 0.89166 1.05003 1.22210 0.92518 1.00774 1.00683 0.90248 0.92709 0.91204 0.83442 0.80989 0.92018 0.92403 0.92030 0.94436 0.86443 0.96031 0.91740 0.85640 0.83221 0.91745 0.91445 0.88169 0.91649 0.91805 0.83861 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.35 8.46 71.24 0.60 -2.75 16 2 C -0.08 -2.56 9.94 24.52 0.24 -2.32 16 3 C -0.18 -6.89 5.14 -18.71 -0.10 -6.98 16 4 C -0.18 -7.12 5.21 29.85 0.16 -6.96 16 5 C -0.13 -4.76 8.52 71.98 0.61 -4.15 16 6 C 0.54 23.59 7.38 86.56 0.64 24.23 16 7 O -0.55 -24.03 9.80 -4.13 -0.04 -24.07 16 8 N -0.54 -24.34 2.69 -654.44 -1.76 -26.10 16 9 C 0.18 8.34 4.28 85.63 0.37 8.70 16 10 C -0.54 -27.16 7.15 25.60 0.18 -26.98 16 11 H 0.05 2.43 7.81 -2.91 -0.02 2.40 16 12 C 0.04 1.93 5.00 84.66 0.42 2.35 16 13 N -0.90 -45.28 13.29 21.45 0.28 -45.00 16 14 Si 0.95 40.05 29.54 68.60 2.03 42.08 16 15 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 16 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 C 0.11 4.79 6.48 38.14 0.25 5.04 16 19 C -0.13 -5.08 9.28 22.38 0.21 -4.87 16 20 C -0.18 -6.09 9.03 22.35 0.20 -5.89 16 21 C 0.09 3.07 6.69 22.50 0.15 3.22 16 22 O -0.33 -9.61 10.14 -93.22 -0.95 -10.55 16 23 C 0.04 0.88 5.46 71.98 0.39 1.27 16 24 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 25 C -0.14 -4.79 9.98 22.35 0.22 -4.56 16 26 C -0.14 -5.77 8.95 22.38 0.20 -5.57 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.80 7.57 -2.39 -0.02 1.78 16 29 H 0.07 2.25 6.92 -2.39 -0.02 2.24 16 30 H 0.15 3.74 7.96 -2.91 -0.02 3.71 16 31 H 0.17 7.90 1.54 -22.33 -0.03 7.87 16 32 H 0.06 2.24 7.93 -2.38 -0.02 2.22 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.43 7.11 -2.39 -0.02 1.41 16 36 H 0.12 5.40 1.66 -10.16 -0.02 5.38 16 37 H 0.02 1.09 5.73 -2.39 -0.01 1.08 16 38 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 39 H 0.13 5.29 5.92 -2.91 -0.02 5.27 16 40 H 0.15 4.13 6.29 -2.91 -0.02 4.11 16 41 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 42 H 0.07 1.31 7.66 -2.39 -0.02 1.29 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 47 H 0.17 7.05 4.78 -39.38 -0.19 6.86 16 Total: -1.00 -57.30 365.78 5.83 -51.47 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: 0.77 Total: 39.85 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 5.49 Total: -27.68 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.48 Total: -71.10 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.99 Total: -34.62 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -57.30 5.83 -51.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789759856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.084 kcal (2) G-P(sol) polarization free energy of solvation -57.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds