Wall clock time and date at job start Tue Mar 31 2020 11:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33016 * 120.00242 * 2 1 4 4 C 1.50693 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47026 * 100.17502 * 4 3 2 6 6 C 1.47067 * 119.99734 * 180.02562 * 3 2 1 7 7 O 1.21638 * 120.00187 * 349.55986 * 6 3 2 8 8 N 1.34777 * 119.99681 * 169.56550 * 6 3 2 9 9 C 1.46498 * 120.00222 * 6.28849 * 8 6 3 10 10 C 1.50695 * 109.47312 * 274.38108 * 9 8 6 11 11 H 1.07999 * 120.00282 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00039 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99761 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00256 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47294 * 90.00087 * 14 12 10 16 16 H 1.48499 * 109.47172 * 210.00180 * 14 12 10 17 17 H 1.48507 * 109.47004 * 329.99984 * 14 12 10 18 18 C 1.40027 * 119.99891 * 186.29665 * 8 6 3 19 19 C 1.38871 * 120.01704 * 353.65428 * 18 8 6 20 20 C 1.38082 * 119.98384 * 180.02562 * 19 18 8 21 21 C 1.38727 * 120.01543 * 0.02562 * 20 19 18 22 22 O 1.35972 * 119.98024 * 179.97438 * 21 20 19 23 23 C 1.42904 * 116.99656 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46976 * 179.97438 * 23 22 21 25 25 C 1.38725 * 120.03384 * 0.25544 * 21 20 19 26 26 C 1.38083 * 120.01655 * 359.48986 * 25 21 20 27 27 H 1.08993 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47037 * 300.00604 * 1 2 3 29 29 H 1.09004 * 109.46681 * 60.00000 * 1 2 3 30 30 H 1.08006 * 119.99748 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46982 * 220.17454 * 4 3 2 32 32 H 1.08996 * 109.47225 * 340.17688 * 4 3 2 33 33 H 1.09007 * 109.46902 * 59.80130 * 5 4 3 34 34 H 1.08997 * 109.47336 * 179.79901 * 5 4 3 35 35 H 1.08994 * 109.47266 * 299.80492 * 5 4 3 36 36 H 1.09001 * 109.46903 * 34.38416 * 9 8 6 37 37 H 1.09004 * 109.46810 * 154.37862 * 9 8 6 38 38 H 0.97001 * 119.99966 * 179.97438 * 13 12 10 39 39 H 1.08000 * 120.00511 * 0.02562 * 19 18 8 40 40 H 1.08000 * 119.99214 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47168 * 300.00224 * 23 22 21 42 42 H 1.09005 * 109.46739 * 60.00214 * 23 22 21 43 43 H 1.08998 * 109.46915 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47211 * 300.00655 * 24 23 22 45 45 H 1.09001 * 109.46808 * 59.99897 * 24 23 22 46 46 H 1.08003 * 119.99115 * 179.74088 * 25 21 20 47 47 H 1.08007 * 120.00931 * 180.23624 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4187 2.4570 -0.0006 5 6 1.3838 3.0264 1.4191 6 6 3.6428 1.1518 -0.0006 7 8 4.2510 0.1157 0.1898 8 7 4.3166 2.2997 -0.2120 9 6 3.5908 3.5689 -0.3038 10 6 3.1133 3.7733 -1.7184 11 1 3.3292 3.0322 -2.4737 12 6 2.4007 4.9066 -2.0485 13 7 2.1381 5.8094 -1.1289 14 14 1.8081 5.1596 -3.8019 15 1 0.4563 4.5653 -3.9582 16 1 1.7469 6.6134 -4.0987 17 1 2.7500 4.5015 -4.7426 18 6 5.7105 2.2792 -0.3440 19 6 6.4116 1.1003 -0.1269 20 6 7.7862 1.0809 -0.2567 21 6 8.4668 2.2389 -0.6035 22 8 9.8204 2.2192 -0.7306 23 6 10.4562 3.4474 -1.0906 24 6 11.9678 3.2307 -1.1847 25 6 7.7677 3.4184 -0.8148 26 6 6.3926 3.4380 -0.6905 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9354 0.0004 31 1 1.9173 3.1641 -0.6635 32 1 0.3999 2.2882 -0.3494 33 1 2.4027 3.1918 1.7693 34 1 0.8419 3.9721 1.4181 35 1 0.8822 2.3208 2.0814 36 1 2.7338 3.5469 0.3694 37 1 4.2532 4.3875 -0.0221 38 1 1.6371 6.6068 -1.3612 39 1 5.8818 0.1988 0.1435 40 1 8.3316 0.1643 -0.0875 41 1 10.0762 3.7841 -2.0552 42 1 10.2441 4.2019 -0.3330 43 1 12.4527 4.1676 -1.4589 44 1 12.3474 2.8941 -0.2200 45 1 12.1802 2.4760 -1.9420 46 1 8.2987 4.3205 -1.0807 47 1 5.8481 4.3555 -0.8588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789759857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:13 Heat of formation + Delta-G solvation = 29.499694 kcal Electronic energy + Delta-G solvation = -27381.602215 eV Core-core repulsion = 23725.961698 eV Total energy + Delta-G solvation = -3655.640517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53300 -39.36931 -37.08909 -36.40785 -34.74566 -32.91393 -31.71757 -31.00398 -30.42217 -28.51177 -27.72752 -26.61256 -24.08601 -23.28349 -22.49868 -22.24290 -21.26788 -20.02923 -17.91251 -17.67263 -16.88078 -16.59328 -15.92439 -15.82696 -15.28318 -14.96276 -14.66684 -14.40080 -13.99319 -13.48509 -13.33597 -13.14587 -13.07191 -12.90073 -12.82966 -12.56436 -12.50941 -12.09828 -11.95933 -11.90143 -11.74921 -11.56316 -11.46013 -11.20755 -11.12425 -10.74866 -10.67568 -10.47606 -10.37050 -10.17245 -9.92457 -9.05502 -8.86991 -8.76147 -8.49945 -8.46232 -8.24588 -6.89173 -6.37566 -4.44469 1.66857 1.90029 2.25398 3.12483 3.20837 3.25129 3.46591 3.69872 3.89130 4.17290 4.47037 4.89450 4.91574 4.98198 5.11810 5.21891 5.35399 5.41954 5.46701 5.49985 5.64134 5.73655 5.79757 5.81272 5.89035 5.95274 5.97747 6.04633 6.12116 6.18916 6.21200 6.38045 6.41141 6.60210 6.73161 6.76056 6.78763 6.84679 6.89849 7.04541 7.10460 7.17362 7.20863 7.52437 7.66996 7.68572 7.87932 7.90973 8.16477 8.60622 8.84864 9.16989 10.63477 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.004465 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.135982 B = 6268.989564 C = 7929.795778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C -0.139 4.139 4 C -0.186 4.186 5 C -0.139 4.139 6 C 0.554 3.446 7 O -0.552 6.552 8 N -0.524 5.524 9 C 0.161 3.839 10 C -0.536 4.536 11 H 0.066 0.934 12 C 0.071 3.929 13 N -0.876 5.876 14 Si 0.896 3.104 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.135 3.865 19 C -0.143 4.143 20 C -0.136 4.136 21 C 0.085 3.915 22 O -0.323 6.323 23 C 0.055 3.945 24 C -0.150 4.150 25 C -0.188 4.188 26 C -0.108 4.108 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.200 0.800 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.116 0.884 37 H 0.040 0.960 38 H 0.271 0.729 39 H 0.188 0.812 40 H 0.123 0.877 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.123 0.877 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -3.200 1.924 6.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.132 4.132 3 C -0.141 4.141 4 C -0.221 4.221 5 C -0.195 4.195 6 C 0.348 3.652 7 O -0.436 6.436 8 N -0.241 5.241 9 C 0.043 3.957 10 C -0.574 4.574 11 H 0.084 0.916 12 C -0.135 4.135 13 N -0.512 5.512 14 Si 0.723 3.277 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.196 1.196 18 C 0.039 3.961 19 C -0.162 4.162 20 C -0.155 4.155 21 C 0.040 3.960 22 O -0.238 6.238 23 C -0.021 4.021 24 C -0.207 4.207 25 C -0.207 4.207 26 C -0.129 4.129 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.215 0.785 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.133 0.867 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.204 0.796 40 H 0.141 0.859 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.140 0.860 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.877 -3.638 2.098 7.223 hybrid contribution -0.304 0.661 -1.133 1.346 sum 5.573 -2.978 0.966 6.392 Atomic orbital electron populations 1.20855 0.92687 1.01648 1.02451 1.23316 0.95883 0.97372 0.96673 1.21423 0.91864 0.97305 1.03550 1.22798 1.00907 0.97541 1.00817 1.21744 1.01107 1.00353 0.96327 1.18649 0.88441 0.82256 0.75879 1.90278 1.68541 1.33171 1.51597 1.45814 1.04143 1.10214 1.63971 1.21648 0.95393 0.79001 0.99628 1.21224 1.35343 1.06063 0.94801 0.91560 1.24958 0.95571 0.95040 0.97949 1.69917 1.38211 1.09815 1.33265 0.86489 0.79517 0.77662 0.84059 1.20034 1.20781 1.19552 1.18054 0.83377 0.94477 1.00149 1.22748 0.92965 1.00496 1.00027 1.20368 0.93716 0.96261 1.05156 1.18970 0.81737 0.94763 1.00526 1.86016 1.17807 1.34571 1.85406 1.22666 0.93404 0.86102 0.99899 1.21757 0.93249 1.02620 1.03104 1.20931 0.94678 0.97043 1.08053 1.20908 0.93264 0.98433 1.00284 0.92403 0.91321 0.91037 0.86570 0.78482 0.92599 0.92594 0.91932 0.94576 0.86704 0.94220 0.91964 0.79633 0.85879 0.92331 0.92371 0.90727 0.91747 0.91733 0.85960 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.76 36.01 0.32 -1.30 16 2 C -0.11 -1.90 9.83 -36.12 -0.36 -2.26 16 3 C -0.14 -2.71 5.17 -102.86 -0.53 -3.25 16 4 C -0.19 -3.65 4.90 -27.88 -0.14 -3.79 16 5 C -0.14 -2.50 8.76 37.16 0.33 -2.17 16 6 C 0.55 12.04 7.51 -12.68 -0.10 11.95 16 7 O -0.55 -12.31 12.67 5.24 0.07 -12.25 16 8 N -0.52 -11.55 2.69 -120.41 -0.32 -11.87 16 9 C 0.16 3.66 3.95 -5.20 -0.02 3.64 16 10 C -0.54 -13.00 7.11 -34.44 -0.24 -13.25 16 11 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 12 C 0.07 1.70 5.00 -17.82 -0.09 1.61 16 13 N -0.88 -21.61 13.29 55.43 0.74 -20.87 16 14 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 C 0.14 2.88 6.50 -83.65 -0.54 2.34 16 19 C -0.14 -2.89 9.05 -39.40 -0.36 -3.24 16 20 C -0.14 -2.46 9.98 -39.46 -0.39 -2.85 16 21 C 0.08 1.49 6.69 -39.22 -0.26 1.23 16 22 O -0.32 -5.07 10.14 -19.65 -0.20 -5.27 16 23 C 0.05 0.65 5.46 37.16 0.20 0.85 16 24 C -0.15 -1.37 10.28 37.16 0.38 -0.98 16 25 C -0.19 -3.29 9.03 -39.46 -0.36 -3.64 16 26 C -0.11 -2.16 9.16 -39.41 -0.36 -2.52 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.07 0.97 7.46 -51.93 -0.39 0.58 16 30 H 0.12 1.94 7.53 -52.48 -0.40 1.55 16 31 H 0.20 4.41 1.51 -77.60 -0.12 4.30 16 32 H 0.06 1.02 6.17 -51.93 -0.32 0.70 16 33 H 0.06 1.06 6.69 -51.93 -0.35 0.71 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 2.54 1.44 -61.81 -0.09 2.45 16 37 H 0.04 0.95 6.23 -51.93 -0.32 0.62 16 38 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 39 H 0.19 3.91 4.50 -56.33 -0.25 3.66 16 40 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 41 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 42 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.12 1.82 6.29 -52.48 -0.33 1.49 16 47 H 0.14 2.90 6.23 -52.48 -0.33 2.57 16 LS Contribution 367.29 15.07 5.54 5.54 Total: -1.00 -26.42 367.29 -8.34 -34.76 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -6.61 Total: 13.36 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.52 Total: -17.64 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.41 Total: -32.74 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.13 Total: -17.51 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.42 -8.34 -34.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789759857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.258 kcal (2) G-P(sol) polarization free energy of solvation -26.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds