Wall clock time and date at job start Tue Mar 31 2020 11:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33016 * 120.00242 * 2 1 4 4 C 1.50693 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47026 * 100.17502 * 4 3 2 6 6 C 1.47067 * 119.99734 * 180.02562 * 3 2 1 7 7 O 1.21638 * 120.00187 * 349.55986 * 6 3 2 8 8 N 1.34777 * 119.99681 * 169.56550 * 6 3 2 9 9 C 1.46498 * 120.00222 * 6.28849 * 8 6 3 10 10 C 1.50695 * 109.47312 * 274.38108 * 9 8 6 11 11 H 1.07999 * 120.00282 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00039 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99761 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00256 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47294 * 90.00087 * 14 12 10 16 16 H 1.48499 * 109.47172 * 210.00180 * 14 12 10 17 17 H 1.48507 * 109.47004 * 329.99984 * 14 12 10 18 18 C 1.40027 * 119.99891 * 186.29665 * 8 6 3 19 19 C 1.38871 * 120.01704 * 353.65428 * 18 8 6 20 20 C 1.38082 * 119.98384 * 180.02562 * 19 18 8 21 21 C 1.38727 * 120.01543 * 0.02562 * 20 19 18 22 22 O 1.35972 * 119.98024 * 179.97438 * 21 20 19 23 23 C 1.42904 * 116.99656 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.46976 * 179.97438 * 23 22 21 25 25 C 1.38725 * 120.03384 * 0.25544 * 21 20 19 26 26 C 1.38083 * 120.01655 * 359.48986 * 25 21 20 27 27 H 1.08993 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47037 * 300.00604 * 1 2 3 29 29 H 1.09004 * 109.46681 * 60.00000 * 1 2 3 30 30 H 1.08006 * 119.99748 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46982 * 220.17454 * 4 3 2 32 32 H 1.08996 * 109.47225 * 340.17688 * 4 3 2 33 33 H 1.09007 * 109.46902 * 59.80130 * 5 4 3 34 34 H 1.08997 * 109.47336 * 179.79901 * 5 4 3 35 35 H 1.08994 * 109.47266 * 299.80492 * 5 4 3 36 36 H 1.09001 * 109.46903 * 34.38416 * 9 8 6 37 37 H 1.09004 * 109.46810 * 154.37862 * 9 8 6 38 38 H 0.97001 * 119.99966 * 179.97438 * 13 12 10 39 39 H 1.08000 * 120.00511 * 0.02562 * 19 18 8 40 40 H 1.08000 * 119.99214 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47168 * 300.00224 * 23 22 21 42 42 H 1.09005 * 109.46739 * 60.00214 * 23 22 21 43 43 H 1.08998 * 109.46915 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47211 * 300.00655 * 24 23 22 45 45 H 1.09001 * 109.46808 * 59.99897 * 24 23 22 46 46 H 1.08003 * 119.99115 * 179.74088 * 25 21 20 47 47 H 1.08007 * 120.00931 * 180.23624 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1519 0.0000 4 6 1.4187 2.4570 -0.0006 5 6 1.3838 3.0264 1.4191 6 6 3.6428 1.1518 -0.0006 7 8 4.2510 0.1157 0.1898 8 7 4.3166 2.2997 -0.2120 9 6 3.5908 3.5689 -0.3038 10 6 3.1133 3.7733 -1.7184 11 1 3.3292 3.0322 -2.4737 12 6 2.4007 4.9066 -2.0485 13 7 2.1381 5.8094 -1.1289 14 14 1.8081 5.1596 -3.8019 15 1 0.4563 4.5653 -3.9582 16 1 1.7469 6.6134 -4.0987 17 1 2.7500 4.5015 -4.7426 18 6 5.7105 2.2792 -0.3440 19 6 6.4116 1.1003 -0.1269 20 6 7.7862 1.0809 -0.2567 21 6 8.4668 2.2389 -0.6035 22 8 9.8204 2.2192 -0.7306 23 6 10.4562 3.4474 -1.0906 24 6 11.9678 3.2307 -1.1847 25 6 7.7677 3.4184 -0.8148 26 6 6.3926 3.4380 -0.6905 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.0470 -0.9354 0.0004 31 1 1.9173 3.1641 -0.6635 32 1 0.3999 2.2882 -0.3494 33 1 2.4027 3.1918 1.7693 34 1 0.8419 3.9721 1.4181 35 1 0.8822 2.3208 2.0814 36 1 2.7338 3.5469 0.3694 37 1 4.2532 4.3875 -0.0221 38 1 1.6371 6.6068 -1.3612 39 1 5.8818 0.1988 0.1435 40 1 8.3316 0.1643 -0.0875 41 1 10.0762 3.7841 -2.0552 42 1 10.2441 4.2019 -0.3330 43 1 12.4527 4.1676 -1.4589 44 1 12.3474 2.8941 -0.2200 45 1 12.1802 2.4760 -1.9420 46 1 8.2987 4.3205 -1.0807 47 1 5.8481 4.3555 -0.8588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789759857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:13 Heat of formation + Delta-G solvation = 17.764877 kcal Electronic energy + Delta-G solvation = -27382.111075 eV Core-core repulsion = 23725.961698 eV Total energy + Delta-G solvation = -3656.149377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11224 -40.72035 -38.48299 -38.05744 -36.20300 -34.67351 -32.82805 -32.35538 -31.86706 -29.96398 -29.36797 -28.04863 -25.50055 -24.74540 -23.89944 -23.74175 -22.61011 -21.52964 -19.22736 -19.19432 -18.67579 -18.22113 -17.35824 -16.98967 -16.75830 -16.52428 -16.27470 -16.04434 -15.44805 -14.90475 -14.77045 -14.52944 -14.32964 -14.27262 -14.16825 -14.01126 -13.78802 -13.33396 -13.25955 -13.21340 -13.03550 -13.00923 -12.86189 -12.66827 -12.62818 -12.35420 -12.08951 -11.94977 -11.80967 -11.61142 -11.50795 -10.67426 -10.56922 -10.43464 -10.11519 -9.96565 -9.73289 -8.48879 -8.17260 -6.33119 0.16221 0.39741 0.78485 1.40977 1.45236 1.52870 2.08281 2.29262 2.35874 2.40764 2.92671 3.03225 3.60712 3.89231 3.97688 4.07765 4.10252 4.18879 4.33481 4.38043 4.40116 4.40817 4.50278 4.56956 4.69388 4.72742 4.74331 4.82939 4.88667 4.93818 4.96277 5.08744 5.14677 5.16898 5.24641 5.27327 5.31207 5.35344 5.38819 5.43760 5.61113 5.65154 5.66279 5.69804 5.91996 6.14548 6.22933 6.47164 6.51829 6.75741 7.18569 7.31043 8.78833 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.004465 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.135982 B = 6268.989564 C = 7929.795778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 C -0.175 4.175 4 C -0.183 4.183 5 C -0.133 4.133 6 C 0.543 3.457 7 O -0.569 6.569 8 N -0.531 5.531 9 C 0.172 3.828 10 C -0.538 4.538 11 H 0.045 0.955 12 C 0.041 3.959 13 N -0.896 5.896 14 Si 0.945 3.055 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.281 1.281 18 C 0.104 3.896 19 C -0.153 4.153 20 C -0.137 4.137 21 C 0.093 3.907 22 O -0.329 6.329 23 C 0.041 3.959 24 C -0.145 4.145 25 C -0.181 4.181 26 C -0.120 4.120 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.174 0.826 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.019 0.981 38 H 0.274 0.726 39 H 0.177 0.823 40 H 0.144 0.856 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.150 0.850 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -3.536 1.609 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.103 4.103 3 C -0.178 4.178 4 C -0.218 4.218 5 C -0.189 4.189 6 C 0.338 3.662 7 O -0.454 6.454 8 N -0.248 5.248 9 C 0.054 3.946 10 C -0.576 4.576 11 H 0.063 0.937 12 C -0.163 4.163 13 N -0.532 5.532 14 Si 0.771 3.229 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.206 1.206 18 C 0.009 3.991 19 C -0.172 4.172 20 C -0.156 4.156 21 C 0.047 3.953 22 O -0.244 6.244 23 C -0.033 4.033 24 C -0.202 4.202 25 C -0.200 4.200 26 C -0.141 4.141 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.190 0.810 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.194 0.806 40 H 0.162 0.838 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.168 0.832 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.004 -3.967 1.784 7.414 hybrid contribution -0.226 0.702 -1.029 1.266 sum 5.778 -3.265 0.754 6.680 Atomic orbital electron populations 1.20958 0.89788 1.03828 1.03011 1.23696 0.97921 0.96326 0.92340 1.21389 0.90674 0.98269 1.07444 1.22578 1.01161 0.97090 1.00956 1.21661 1.00320 1.00799 0.96153 1.19126 0.89558 0.81969 0.75565 1.90259 1.69118 1.33393 1.52663 1.45835 1.04595 1.10087 1.64318 1.21533 0.95104 0.78843 0.99160 1.21151 1.35640 1.05826 0.94955 0.93669 1.25425 0.95565 0.94746 1.00545 1.69970 1.38719 1.10117 1.34425 0.85736 0.79091 0.77579 0.80521 1.19166 1.20254 1.20576 1.18374 0.83422 0.95502 1.01834 1.22655 0.93911 0.99758 1.00878 1.20568 0.93052 0.97528 1.04452 1.18999 0.82840 0.94278 0.99134 1.86034 1.16403 1.36824 1.85092 1.23061 0.94891 0.84959 1.00418 1.21785 0.91109 1.04046 1.03262 1.21164 0.93678 0.98311 1.06865 1.20885 0.94363 0.97531 1.01294 0.89558 0.90153 0.90708 0.86538 0.80977 0.91282 0.94211 0.92166 0.92181 0.85752 0.96332 0.91704 0.80649 0.83842 0.91732 0.91468 0.88155 0.91639 0.91784 0.83223 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 8.76 71.24 0.62 -2.24 16 2 C -0.08 -2.68 9.83 24.52 0.24 -2.44 16 3 C -0.18 -6.85 5.17 -18.71 -0.10 -6.95 16 4 C -0.18 -7.14 4.90 29.85 0.15 -7.00 16 5 C -0.13 -4.75 8.76 71.98 0.63 -4.12 16 6 C 0.54 24.35 7.51 86.56 0.65 25.00 16 7 O -0.57 -26.16 12.67 -4.15 -0.05 -26.21 16 8 N -0.53 -24.47 2.69 -653.10 -1.76 -26.23 16 9 C 0.17 8.15 3.95 85.63 0.34 8.49 16 10 C -0.54 -26.91 7.11 25.60 0.18 -26.72 16 11 H 0.04 2.41 7.81 -2.91 -0.02 2.38 16 12 C 0.04 1.99 5.00 84.66 0.42 2.42 16 13 N -0.90 -44.68 13.29 21.45 0.28 -44.39 16 14 Si 0.95 39.59 29.54 68.60 2.03 41.61 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 16 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 C 0.10 4.61 6.50 38.13 0.25 4.86 16 19 C -0.15 -6.34 9.05 22.38 0.20 -6.14 16 20 C -0.14 -4.93 9.98 22.35 0.22 -4.71 16 21 C 0.09 3.18 6.69 22.50 0.15 3.33 16 22 O -0.33 -9.71 10.14 -93.23 -0.95 -10.65 16 23 C 0.04 0.89 5.46 71.98 0.39 1.28 16 24 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 25 C -0.18 -6.27 9.03 22.35 0.20 -6.07 16 26 C -0.12 -4.96 9.16 22.38 0.21 -4.76 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 29 H 0.07 1.82 7.46 -2.38 -0.02 1.80 16 30 H 0.12 3.75 7.53 -2.91 -0.02 3.73 16 31 H 0.17 7.84 1.51 -26.50 -0.04 7.80 16 32 H 0.07 2.44 6.17 -2.39 -0.01 2.43 16 33 H 0.04 1.53 6.69 -2.38 -0.02 1.52 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.13 5.69 1.44 -11.66 -0.02 5.67 16 37 H 0.02 0.94 6.23 -2.39 -0.01 0.93 16 38 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 39 H 0.18 7.68 4.50 -63.85 -0.29 7.40 16 40 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.06 1.32 7.67 -2.39 -0.02 1.31 16 42 H 0.07 1.34 7.65 -2.38 -0.02 1.32 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.15 4.23 6.29 -2.91 -0.02 4.21 16 47 H 0.13 5.49 6.23 -2.91 -0.02 5.47 16 Total: -1.00 -58.05 367.29 5.72 -52.32 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: 0.67 Total: 40.82 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 5.50 Total: -27.27 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -1.47 Total: -70.63 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.00 Total: -36.87 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.61 kcal Total: -58.05 5.72 -52.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789759857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.089 kcal (2) G-P(sol) polarization free energy of solvation -58.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds