Wall clock time and date at job start Tue Mar 31 2020 11:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46954 * 93.78302 * 3 2 1 5 5 C 1.52997 * 109.47403 * 333.77514 * 3 2 1 6 6 N 1.46907 * 109.46763 * 213.77859 * 3 2 1 7 7 C 1.46895 * 110.99954 * 303.95514 * 6 3 2 8 8 C 1.46900 * 110.99950 * 180.02562 * 6 3 2 9 9 C 1.52996 * 109.47019 * 198.41407 * 8 6 3 10 10 H 1.09004 * 109.47410 * 53.36806 * 9 8 6 11 11 O 1.42898 * 109.47398 * 293.36515 * 9 8 6 12 12 C 1.53003 * 109.46945 * 173.36156 * 9 8 6 13 13 O 1.42901 * 109.47200 * 184.99835 * 12 9 8 14 14 C 1.35669 * 117.00205 * 180.02562 * 13 12 9 15 15 C 1.39313 * 119.81736 * 180.02562 * 14 13 12 16 16 C 1.36439 * 120.18367 * 179.71846 * 15 14 13 17 17 C 1.40838 * 119.81327 * 0.28089 * 16 15 14 18 18 C 1.41216 * 120.18110 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00081 * 334.35613 * 18 17 16 20 20 C 1.39883 * 120.00063 * 154.35585 * 18 17 16 21 21 N 1.30879 * 120.00079 * 341.68424 * 20 18 17 22 22 Si 1.86799 * 120.00077 * 161.68491 * 20 18 17 23 23 H 1.48500 * 109.47350 * 94.97956 * 22 20 18 24 24 H 1.48501 * 109.47575 * 214.98315 * 22 20 18 25 25 H 1.48503 * 109.47162 * 334.98268 * 22 20 18 26 26 C 1.40832 * 119.63925 * 359.97438 * 17 16 15 27 27 C 1.36433 * 119.81238 * 0.02562 * 26 17 16 28 28 H 4.44650 * 5.63238 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46669 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.46577 * 299.99349 * 4 3 2 31 31 H 1.08998 * 109.47365 * 59.99934 * 4 3 2 32 32 H 1.08995 * 109.47382 * 300.00179 * 5 3 2 33 33 H 1.09004 * 109.46777 * 60.00767 * 5 3 2 34 34 H 1.09001 * 109.46673 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47452 * 289.58038 * 7 6 3 36 36 H 1.09000 * 109.47201 * 49.58250 * 7 6 3 37 37 H 1.08999 * 109.47274 * 169.58101 * 7 6 3 38 38 H 1.08991 * 109.47396 * 78.41327 * 8 6 3 39 39 H 1.09009 * 109.46839 * 318.41032 * 8 6 3 40 40 H 0.96705 * 113.99775 * 300.00055 * 11 9 8 41 41 H 1.08998 * 109.47046 * 65.00290 * 12 9 8 42 42 H 1.08998 * 109.47752 * 305.00259 * 12 9 8 43 43 H 1.07999 * 119.91058 * 359.97438 * 15 14 13 44 44 H 1.08002 * 120.09475 * 180.29613 * 16 15 14 45 45 H 0.97002 * 120.00146 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.09013 * 180.02562 * 26 17 16 47 47 H 1.08000 * 119.91005 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.0961 -1.4394 5 6 3.1567 -1.2931 0.6374 6 7 3.1351 1.1521 0.7701 7 6 2.5878 2.4091 0.2425 8 6 4.6036 1.1858 0.7914 9 6 5.0766 2.0811 1.9383 10 1 4.6134 1.7542 2.8693 11 8 4.7043 3.4346 1.6708 12 6 6.5984 1.9861 2.0652 13 8 7.0285 2.7294 3.2074 14 6 8.3605 2.7484 3.4641 15 6 8.8442 3.4546 4.5632 16 6 10.1818 3.4740 4.8316 17 6 11.0748 2.7823 3.9905 18 6 12.4607 2.7966 4.2613 19 1 12.8947 3.6176 4.8128 20 6 13.2714 1.7475 3.8154 21 7 12.7336 0.6038 3.4756 22 14 15.1217 1.9790 3.7050 23 1 15.7590 1.4731 4.9472 24 1 15.6461 1.2258 2.5375 25 1 15.4312 3.4223 3.5424 26 6 10.5781 2.0752 2.8784 27 6 9.2377 2.0659 2.6240 28 1 -1.0500 0.0002 0.0001 29 1 4.2460 0.0970 -1.4393 30 1 2.7930 -0.7583 -2.0107 31 1 2.7922 1.0178 -1.8934 32 1 2.7934 -1.3610 1.6628 33 1 2.7938 -2.1475 0.0660 34 1 4.2467 -1.2927 0.6369 35 1 3.0375 2.6225 -0.7273 36 1 1.5077 2.3160 0.1295 37 1 2.8120 3.2215 0.9336 38 1 4.9717 1.5824 -0.1547 39 1 4.9880 0.1761 0.9364 40 1 5.0815 3.7923 0.8553 41 1 7.0639 2.3958 1.1688 42 1 6.8890 0.9420 2.1807 43 1 8.1581 3.9849 5.2070 44 1 10.5547 4.0180 5.6868 45 1 13.2958 -0.1236 3.1660 46 1 11.2563 1.5419 2.2288 47 1 8.8551 1.5239 1.7719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794575255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:02 Heat of formation + Delta-G solvation = -4.340950 kcal Electronic energy + Delta-G solvation = -25931.687075 eV Core-core repulsion = 22274.579118 eV Total energy + Delta-G solvation = -3657.107958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.85235 -38.78862 -37.18038 -35.98954 -33.37509 -33.33665 -31.38490 -30.78753 -29.63642 -29.07411 -27.81723 -26.47170 -24.88762 -24.43189 -22.60918 -21.19058 -20.73087 -20.34829 -17.89556 -17.35594 -16.99810 -16.55191 -16.35075 -16.31841 -15.21772 -15.06874 -14.89181 -14.25795 -14.15083 -14.09299 -13.92731 -13.55181 -13.26548 -12.83629 -12.53647 -12.43226 -12.28313 -12.11921 -12.02927 -11.86953 -11.80581 -11.62803 -11.44359 -11.42383 -11.12000 -11.03191 -10.81597 -10.71317 -10.57315 -10.43098 -9.98597 -9.82516 -9.78636 -9.36140 -9.01415 -8.53552 -7.66039 -7.00705 -6.73568 -4.25200 2.44048 2.59005 2.76558 2.95839 3.07603 3.11922 3.21129 3.55418 3.94754 3.95072 4.10142 4.42439 4.59781 4.61593 4.71413 4.86338 4.95744 5.11417 5.18108 5.18925 5.26155 5.30977 5.38461 5.42501 5.51492 5.56108 5.64697 5.67666 5.69508 5.81840 5.93702 6.01382 6.09419 6.13649 6.28514 6.70409 6.78371 6.80051 6.88991 7.06638 7.27165 7.36073 7.40330 7.55745 7.64975 7.89286 7.99885 8.15077 8.44722 8.64882 8.89936 8.99037 10.21790 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025269 B = 0.002263 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.816300 B =12372.300936 C =13052.562345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.212 3.788 4 C -0.178 4.178 5 C -0.141 4.141 6 N -0.519 5.519 7 C 0.012 3.988 8 C 0.021 3.979 9 C 0.118 3.882 10 H 0.114 0.886 11 O -0.547 6.547 12 C 0.040 3.960 13 O -0.317 6.317 14 C -0.008 4.008 15 C -0.113 4.113 16 C -0.195 4.195 17 C 0.087 3.913 18 C -0.464 4.464 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.134 4.134 27 C -0.175 4.175 28 H 0.217 0.783 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.368 0.632 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.279 0.721 46 H 0.118 0.882 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 -2.951 -10.253 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.163 4.163 3 C 0.123 3.877 4 C -0.237 4.237 5 C -0.199 4.199 6 N -0.243 5.243 7 C -0.136 4.136 8 C -0.107 4.107 9 C 0.059 3.941 10 H 0.132 0.868 11 O -0.351 6.351 12 C -0.038 4.038 13 O -0.233 6.233 14 C -0.052 4.052 15 C -0.131 4.131 16 C -0.214 4.214 17 C 0.085 3.915 18 C -0.494 4.494 19 H 0.095 0.905 20 C -0.141 4.141 21 N -0.427 5.427 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.153 4.153 27 C -0.194 4.194 28 H 0.234 0.766 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.214 0.786 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.090 0.910 46 H 0.136 0.864 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.768 -3.225 -9.168 20.252 hybrid contribution 1.398 -0.189 -1.672 2.188 sum -16.370 -3.414 -10.841 19.928 Atomic orbital electron populations 1.24878 0.95793 1.00314 1.00870 1.22543 0.93534 1.00257 0.99985 1.18057 0.84569 0.92770 0.92288 1.22484 1.01875 1.02964 0.96368 1.21949 1.01488 0.94581 1.01861 1.62139 1.07370 1.02342 1.52413 1.22742 0.99705 0.92326 0.98804 1.22883 0.87841 1.01899 0.98101 1.21909 0.91821 0.81808 0.98609 0.86808 1.86634 1.74146 1.27414 1.46919 1.23089 0.94560 0.96519 0.89583 1.85867 1.22399 1.70110 1.44927 1.18592 0.80760 1.05901 0.99900 1.19631 0.95269 1.01636 0.96604 1.20616 0.91820 1.07984 1.01017 1.17595 0.93195 0.90648 0.90049 1.19450 0.92309 1.05723 1.31932 0.90495 1.25865 1.01227 0.94178 0.92867 1.69846 1.38030 1.01915 1.32901 0.86351 0.82391 0.79718 0.78555 1.19657 1.20153 1.18484 1.20882 0.93160 1.02915 0.98351 1.20583 0.95044 1.03674 1.00064 0.76586 0.91302 0.91564 0.91974 0.91056 0.91719 0.91208 0.95753 0.91899 0.88336 0.93639 0.88950 0.78574 0.93086 0.92299 0.88447 0.88186 0.91047 0.86383 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 19.24 29.55 0.57 -1.18 16 2 C -0.16 -1.64 10.22 -37.12 -0.38 -2.02 16 3 C 0.21 1.99 0.64 -134.38 -0.09 1.90 16 4 C -0.18 -1.43 7.79 37.16 0.29 -1.14 16 5 C -0.14 -1.21 8.26 37.16 0.31 -0.90 16 6 N -0.52 -5.38 4.50 -230.43 -1.04 -6.42 16 7 C 0.01 0.12 8.31 60.06 0.50 0.62 16 8 C 0.02 0.20 3.65 -3.83 -0.01 0.19 16 9 C 0.12 1.48 3.45 -26.73 -0.09 1.39 16 10 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 11 O -0.55 -7.01 10.49 -40.08 -0.42 -7.43 16 12 C 0.04 0.61 4.36 37.16 0.16 0.77 16 13 O -0.32 -6.47 10.09 -23.56 -0.24 -6.71 16 14 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 15 C -0.11 -2.65 9.92 -39.83 -0.40 -3.05 16 16 C -0.19 -4.83 9.74 -39.25 -0.38 -5.21 16 17 C 0.09 2.33 5.56 -106.80 -0.59 1.74 16 18 C -0.46 -12.31 9.03 -37.84 -0.34 -12.65 16 19 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 20 C 0.08 1.89 5.11 -17.34 -0.09 1.80 16 21 N -0.80 -20.68 11.06 55.54 0.61 -20.06 16 22 Si 0.91 18.64 29.60 -169.99 -5.03 13.60 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 26 C -0.13 -3.45 8.64 -39.25 -0.34 -3.79 16 27 C -0.17 -4.06 8.96 -39.83 -0.36 -4.41 16 28 H 0.22 1.13 7.80 -54.09 -0.42 0.71 16 29 H 0.07 0.52 6.84 -51.93 -0.36 0.16 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.51 6.73 -51.93 -0.35 0.16 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.55 6.06 -51.93 -0.31 0.23 16 35 H 0.02 0.22 6.78 -51.93 -0.35 -0.14 16 36 H 0.06 0.64 6.61 -51.93 -0.34 0.30 16 37 H 0.10 1.08 5.81 -51.93 -0.30 0.78 16 38 H 0.05 0.40 7.13 -51.93 -0.37 0.03 16 39 H 0.09 0.85 5.56 -51.92 -0.29 0.56 16 40 H 0.37 3.55 9.05 45.56 0.41 3.96 16 41 H 0.05 0.74 7.63 -51.93 -0.40 0.34 16 42 H 0.06 0.88 7.66 -51.93 -0.40 0.48 16 43 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 45 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 46 H 0.12 3.12 6.26 -52.49 -0.33 2.79 16 47 H 0.09 1.88 6.27 -52.49 -0.33 1.55 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -30.00 377.73 -8.15 -38.15 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.22 Total: 9.56 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -1.50 Total: -26.39 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: -0.42 Total: -26.48 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.66 Total: -14.14 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.00 -8.15 -38.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794575255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.810 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds