Wall clock time and date at job start Tue Mar 31 2020 11:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46954 * 93.78302 * 3 2 1 5 5 C 1.52997 * 109.47403 * 333.77514 * 3 2 1 6 6 N 1.46907 * 109.46763 * 213.77859 * 3 2 1 7 7 C 1.46895 * 110.99954 * 303.95514 * 6 3 2 8 8 C 1.46900 * 110.99950 * 180.02562 * 6 3 2 9 9 C 1.52996 * 109.47019 * 198.41407 * 8 6 3 10 10 H 1.09004 * 109.47410 * 53.36806 * 9 8 6 11 11 O 1.42898 * 109.47398 * 293.36515 * 9 8 6 12 12 C 1.53003 * 109.46945 * 173.36156 * 9 8 6 13 13 O 1.42901 * 109.47200 * 184.99835 * 12 9 8 14 14 C 1.35669 * 117.00205 * 180.02562 * 13 12 9 15 15 C 1.39313 * 119.81736 * 180.02562 * 14 13 12 16 16 C 1.36439 * 120.18367 * 179.71846 * 15 14 13 17 17 C 1.40838 * 119.81327 * 0.28089 * 16 15 14 18 18 C 1.41216 * 120.18110 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00081 * 334.35613 * 18 17 16 20 20 C 1.39883 * 120.00063 * 154.35585 * 18 17 16 21 21 N 1.30879 * 120.00079 * 341.68424 * 20 18 17 22 22 Si 1.86799 * 120.00077 * 161.68491 * 20 18 17 23 23 H 1.48500 * 109.47350 * 94.97956 * 22 20 18 24 24 H 1.48501 * 109.47575 * 214.98315 * 22 20 18 25 25 H 1.48503 * 109.47162 * 334.98268 * 22 20 18 26 26 C 1.40832 * 119.63925 * 359.97438 * 17 16 15 27 27 C 1.36433 * 119.81238 * 0.02562 * 26 17 16 28 28 H 4.44650 * 5.63238 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.46669 * 179.97438 * 4 3 2 30 30 H 1.08995 * 109.46577 * 299.99349 * 4 3 2 31 31 H 1.08998 * 109.47365 * 59.99934 * 4 3 2 32 32 H 1.08995 * 109.47382 * 300.00179 * 5 3 2 33 33 H 1.09004 * 109.46777 * 60.00767 * 5 3 2 34 34 H 1.09001 * 109.46673 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47452 * 289.58038 * 7 6 3 36 36 H 1.09000 * 109.47201 * 49.58250 * 7 6 3 37 37 H 1.08999 * 109.47274 * 169.58101 * 7 6 3 38 38 H 1.08991 * 109.47396 * 78.41327 * 8 6 3 39 39 H 1.09009 * 109.46839 * 318.41032 * 8 6 3 40 40 H 0.96705 * 113.99775 * 300.00055 * 11 9 8 41 41 H 1.08998 * 109.47046 * 65.00290 * 12 9 8 42 42 H 1.08998 * 109.47752 * 305.00259 * 12 9 8 43 43 H 1.07999 * 119.91058 * 359.97438 * 15 14 13 44 44 H 1.08002 * 120.09475 * 180.29613 * 16 15 14 45 45 H 0.97002 * 120.00146 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.09013 * 180.02562 * 26 17 16 47 47 H 1.08000 * 119.91005 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.0961 -1.4394 5 6 3.1567 -1.2931 0.6374 6 7 3.1351 1.1521 0.7701 7 6 2.5878 2.4091 0.2425 8 6 4.6036 1.1858 0.7914 9 6 5.0766 2.0811 1.9383 10 1 4.6134 1.7542 2.8693 11 8 4.7043 3.4346 1.6708 12 6 6.5984 1.9861 2.0652 13 8 7.0285 2.7294 3.2074 14 6 8.3605 2.7484 3.4641 15 6 8.8442 3.4546 4.5632 16 6 10.1818 3.4740 4.8316 17 6 11.0748 2.7823 3.9905 18 6 12.4607 2.7966 4.2613 19 1 12.8947 3.6176 4.8128 20 6 13.2714 1.7475 3.8154 21 7 12.7336 0.6038 3.4756 22 14 15.1217 1.9790 3.7050 23 1 15.7590 1.4731 4.9472 24 1 15.6461 1.2258 2.5375 25 1 15.4312 3.4223 3.5424 26 6 10.5781 2.0752 2.8784 27 6 9.2377 2.0659 2.6240 28 1 -1.0500 0.0002 0.0001 29 1 4.2460 0.0970 -1.4393 30 1 2.7930 -0.7583 -2.0107 31 1 2.7922 1.0178 -1.8934 32 1 2.7934 -1.3610 1.6628 33 1 2.7938 -2.1475 0.0660 34 1 4.2467 -1.2927 0.6369 35 1 3.0375 2.6225 -0.7273 36 1 1.5077 2.3160 0.1295 37 1 2.8120 3.2215 0.9336 38 1 4.9717 1.5824 -0.1547 39 1 4.9880 0.1761 0.9364 40 1 5.0815 3.7923 0.8553 41 1 7.0639 2.3958 1.1688 42 1 6.8890 0.9420 2.1807 43 1 8.1581 3.9849 5.2070 44 1 10.5547 4.0180 5.6868 45 1 13.2958 -0.1236 3.1660 46 1 11.2563 1.5419 2.2288 47 1 8.8551 1.5239 1.7719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794575255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:01 Heat of formation + Delta-G solvation = -22.886649 kcal Electronic energy + Delta-G solvation = -25932.491277 eV Core-core repulsion = 22274.579118 eV Total energy + Delta-G solvation = -3657.912160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84548 -40.22837 -38.51504 -37.42621 -35.19294 -34.12656 -32.08626 -31.93906 -31.49739 -30.78856 -28.55394 -27.53891 -26.47189 -25.41076 -23.76906 -22.84099 -22.03617 -21.68047 -19.25701 -18.61078 -18.57883 -17.69007 -17.47942 -17.06898 -16.88027 -16.04602 -15.95624 -15.74109 -15.55455 -15.12384 -14.90181 -14.81569 -14.34851 -14.17653 -14.14846 -13.80578 -13.52474 -13.27278 -13.17062 -12.95563 -12.76739 -12.74026 -12.72419 -12.52058 -12.50383 -12.29050 -12.16666 -11.84044 -11.68681 -11.57558 -11.41697 -11.21674 -11.12419 -10.85548 -10.81733 -9.56070 -9.28257 -8.89329 -8.59742 -6.21487 0.94791 1.04924 1.40221 1.49726 1.56049 1.72565 1.90900 2.23579 2.45220 2.73028 3.12063 3.31919 3.48282 3.70767 3.90889 3.93527 4.00401 4.03492 4.14837 4.26933 4.31154 4.37111 4.40223 4.49548 4.53681 4.60807 4.66087 4.74337 4.80005 4.88666 4.89284 4.99882 5.05893 5.08943 5.16226 5.21287 5.24639 5.29746 5.37323 5.53189 5.67130 5.97388 6.03051 6.06285 6.07084 6.24815 6.57046 6.69610 6.78509 6.83232 6.96127 7.11507 8.37684 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025269 B = 0.002263 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.816300 B =12372.300936 C =13052.562345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.200 4.200 3 C 0.209 3.791 4 C -0.173 4.173 5 C -0.141 4.141 6 N -0.533 5.533 7 C 0.018 3.982 8 C 0.030 3.970 9 C 0.130 3.870 10 H 0.096 0.904 11 O -0.560 6.560 12 C 0.032 3.968 13 O -0.329 6.329 14 C 0.002 3.998 15 C -0.125 4.125 16 C -0.205 4.205 17 C 0.054 3.946 18 C -0.501 4.501 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.831 5.831 22 Si 0.980 3.020 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.260 1.260 26 C -0.153 4.153 27 C -0.174 4.174 28 H 0.245 0.755 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.382 0.618 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.287 0.713 46 H 0.105 0.895 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.768 -3.371 -11.540 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C 0.120 3.880 4 C -0.232 4.232 5 C -0.198 4.198 6 N -0.257 5.257 7 C -0.130 4.130 8 C -0.098 4.098 9 C 0.071 3.929 10 H 0.114 0.886 11 O -0.367 6.367 12 C -0.044 4.044 13 O -0.245 6.245 14 C -0.042 4.042 15 C -0.143 4.143 16 C -0.224 4.224 17 C 0.052 3.948 18 C -0.530 4.530 19 H 0.093 0.907 20 C -0.179 4.179 21 N -0.458 5.458 22 Si 0.801 3.199 23 H -0.189 1.189 24 H -0.190 1.190 25 H -0.184 1.184 26 C -0.173 4.173 27 C -0.193 4.193 28 H 0.261 0.739 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.123 0.877 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.342 -3.644 -10.467 21.430 hybrid contribution 1.330 -0.057 -1.285 1.851 sum -17.011 -3.702 -11.752 21.005 Atomic orbital electron populations 1.25667 0.96697 0.99005 0.99659 1.22972 0.94339 1.01513 1.01190 1.18126 0.84541 0.92382 0.92903 1.22441 1.02206 1.03083 0.95484 1.21951 1.01890 0.94737 1.01207 1.62059 1.07482 1.02815 1.53307 1.22638 0.99472 0.91901 0.98959 1.22761 0.87841 1.01749 0.97477 1.21744 0.89678 0.82413 0.99103 0.88621 1.86611 1.74349 1.27630 1.48083 1.23451 0.96358 0.96334 0.88272 1.85866 1.20595 1.70872 1.47124 1.18702 0.82014 1.04412 0.99095 1.19905 0.95173 1.01927 0.97314 1.20799 0.92403 1.08016 1.01198 1.17959 0.93995 0.91863 0.91018 1.19688 0.93006 1.06611 1.33742 0.90733 1.26698 1.05938 0.93373 0.91920 1.69888 1.40001 1.02633 1.33294 0.85228 0.76137 0.79605 0.78939 1.18925 1.19040 1.18377 1.20872 0.94178 1.03754 0.98462 1.20804 0.94118 1.03484 1.00906 0.73911 0.90625 0.90965 0.92274 0.92315 0.90777 0.90502 0.94662 0.92420 0.89494 0.92037 0.88059 0.76929 0.91704 0.91640 0.86577 0.87386 0.90253 0.87657 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 19.24 74.32 1.43 -1.60 16 2 C -0.20 -3.76 10.22 31.13 0.32 -3.45 16 3 C 0.21 3.60 0.64 1.72 0.00 3.60 16 4 C -0.17 -2.43 7.79 71.98 0.56 -1.87 16 5 C -0.14 -2.20 8.26 71.98 0.59 -1.61 16 6 N -0.53 -10.26 4.50 -882.95 -3.97 -14.23 16 7 C 0.02 0.33 8.31 127.69 1.06 1.39 16 8 C 0.03 0.52 3.65 86.30 0.32 0.84 16 9 C 0.13 3.08 3.45 30.59 0.11 3.18 16 10 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 11 O -0.56 -13.53 10.49 -144.34 -1.51 -15.04 16 12 C 0.03 0.92 4.36 71.98 0.31 1.23 16 13 O -0.33 -12.94 10.09 -85.23 -0.86 -13.80 16 14 C 0.00 0.08 6.71 22.79 0.15 0.23 16 15 C -0.12 -5.83 9.92 22.11 0.22 -5.61 16 16 C -0.20 -10.30 9.74 22.49 0.22 -10.08 16 17 C 0.05 2.94 5.56 -21.28 -0.12 2.82 16 18 C -0.50 -27.20 9.03 23.40 0.21 -26.99 16 19 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 20 C 0.03 1.75 5.11 85.23 0.44 2.18 16 21 N -0.83 -43.43 11.06 21.82 0.24 -43.19 16 22 Si 0.98 38.25 29.60 68.60 2.03 40.28 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 26 C -0.15 -8.02 8.64 22.48 0.19 -7.82 16 27 C -0.17 -7.99 8.96 22.11 0.20 -7.79 16 28 H 0.24 1.98 7.80 -4.42 -0.03 1.94 16 29 H 0.07 0.94 6.84 -2.39 -0.02 0.92 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.86 6.73 -2.39 -0.02 0.84 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.06 6.06 -2.39 -0.01 1.04 16 35 H 0.03 0.56 6.78 -2.39 -0.02 0.55 16 36 H 0.06 1.12 6.61 -2.39 -0.02 1.10 16 37 H 0.09 1.82 5.81 -2.39 -0.01 1.80 16 38 H 0.06 0.91 7.13 -2.39 -0.02 0.89 16 39 H 0.10 1.62 5.56 -2.38 -0.01 1.61 16 40 H 0.38 6.62 9.05 -74.05 -0.67 5.95 16 41 H 0.06 1.69 7.63 -2.39 -0.02 1.68 16 42 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 43 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 44 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 45 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 46 H 0.11 5.70 6.26 -2.91 -0.02 5.68 16 47 H 0.12 4.70 6.27 -2.91 -0.02 4.69 16 Total: -1.00 -64.89 377.73 2.44 -62.45 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.30 Total: 34.88 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 6.21 Total: -51.34 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -3.73 Total: -57.43 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -2.37 Total: -28.84 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -64.89 2.44 -62.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794575255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.563 kcal (2) G-P(sol) polarization free energy of solvation -64.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds