Wall clock time and date at job start Tue Mar 31 2020 11:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35932 * 117.00207 * 2 1 4 4 C 1.35065 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.47183 * 120.00356 * 191.02843 * 4 3 2 6 6 C 1.39829 * 120.17002 * 226.16859 * 5 4 3 7 7 C 1.37896 * 119.82537 * 179.74050 * 6 5 4 8 8 C 1.38402 * 120.17070 * 0.53021 * 7 6 5 9 9 C 1.38407 * 120.34126 * 359.74638 * 8 7 6 10 10 C 1.37885 * 120.17437 * 359.97426 * 9 8 7 11 11 C 1.46951 * 120.00298 * 179.97438 * 3 2 1 12 12 O 1.21665 * 120.00111 * 187.20627 * 11 3 2 13 13 N 1.34772 * 119.99740 * 7.21101 * 11 3 2 14 14 C 1.46507 * 120.00180 * 179.97438 * 13 11 3 15 15 C 1.52992 * 109.47345 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47545 * 300.00433 * 15 14 13 17 17 C 1.53004 * 109.47256 * 60.00292 * 15 14 13 18 18 C 1.53003 * 109.47396 * 180.02562 * 15 14 13 19 19 C 1.50692 * 109.47459 * 180.02562 * 18 15 14 20 20 H 1.08001 * 119.99929 * 359.97438 * 19 18 15 21 21 C 1.37879 * 120.00082 * 180.02562 * 19 18 15 22 22 N 1.31508 * 119.99901 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99815 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46594 * 120.00169 * 23 21 19 26 26 H 1.48503 * 109.47173 * 239.99699 * 23 21 19 27 27 H 1.09005 * 109.47288 * 300.00018 * 1 2 3 28 28 H 1.09000 * 109.47065 * 59.99921 * 1 2 3 29 29 H 1.09001 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00255 * 10.74709 * 4 3 2 31 31 H 1.08002 * 120.08942 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.91933 * 180.25257 * 7 6 5 33 33 H 1.07997 * 119.82817 * 179.71823 * 8 7 6 34 34 H 1.08001 * 119.91105 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.08941 * 180.02562 * 10 9 8 36 36 H 0.97000 * 120.00223 * 0.02562 * 13 11 3 37 37 H 1.09002 * 109.47154 * 300.00325 * 14 13 11 38 38 H 1.09003 * 109.46412 * 59.99844 * 14 13 11 39 39 H 1.09004 * 109.47062 * 59.99725 * 16 15 14 40 40 H 1.09000 * 109.47520 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.47104 * 300.00192 * 16 15 14 42 42 H 1.09002 * 109.47026 * 59.99825 * 17 15 14 43 43 H 1.09000 * 109.47263 * 179.97438 * 17 15 14 44 44 H 1.09004 * 109.46976 * 300.00045 * 17 15 14 45 45 H 1.09002 * 109.47005 * 300.00247 * 18 15 14 46 46 H 1.09003 * 109.46510 * 59.99735 * 18 15 14 47 47 H 0.97000 * 120.00062 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.3106 2.3439 0.0005 5 6 1.9589 3.6426 -0.2433 6 6 1.6692 4.7375 0.5767 7 6 2.2848 5.9496 0.3451 8 6 3.1789 6.0868 -0.7024 9 6 3.4664 5.0091 -1.5219 10 6 2.8634 3.7891 -1.2997 11 6 3.5137 1.2881 0.0006 12 8 4.0664 2.3638 0.1327 13 7 4.2472 0.1669 -0.1454 14 6 5.7103 0.2436 -0.1454 15 6 6.2945 -1.1587 -0.3265 16 6 5.8309 -2.0567 0.8222 17 6 5.8145 -1.7434 -1.6564 18 6 7.8224 -1.0788 -0.3259 19 6 8.3979 -2.4600 -0.5048 20 1 7.7397 -3.3099 -0.6082 21 6 9.7647 -2.6387 -0.5355 22 7 10.5662 -1.6038 -0.4091 23 14 10.4779 -4.3510 -0.7566 24 1 9.3731 -5.3359 -0.8756 25 1 11.3069 -4.3865 -1.9883 26 1 11.3211 -4.6915 0.4175 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2458 2.2964 0.1754 31 1 0.9681 4.6333 1.3915 32 1 2.0653 6.7952 0.9800 33 1 3.6544 7.0397 -0.8815 34 1 4.1649 5.1240 -2.3376 35 1 3.0890 2.9490 -1.9398 36 1 3.8066 -0.6907 -0.2512 37 1 6.0406 0.8829 -0.9641 38 1 6.0522 0.6606 0.8019 39 1 4.7423 -2.1138 0.8222 40 1 6.2474 -3.0557 0.6935 41 1 6.1728 -1.6402 1.7697 42 1 6.1448 -1.1037 -2.4749 43 1 6.2311 -2.7424 -1.7857 44 1 4.7260 -1.8005 -1.6565 45 1 8.1531 -0.4390 -1.1441 46 1 8.1640 -0.6624 0.6218 47 1 11.5277 -1.7294 -0.4310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813704765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:08 Heat of formation + Delta-G solvation = -39.081957 kcal Electronic energy + Delta-G solvation = -26600.245938 eV Core-core repulsion = 22941.631497 eV Total energy + Delta-G solvation = -3658.614441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52749 -38.73497 -38.67937 -37.06634 -33.74712 -32.97425 -32.09361 -30.80527 -29.41838 -27.77008 -27.11522 -26.49546 -26.28739 -23.70594 -22.69170 -22.32011 -21.34406 -19.68078 -18.74288 -17.74415 -17.07326 -16.36470 -16.23018 -15.91400 -15.41640 -15.02177 -14.89277 -14.59135 -14.48481 -14.46160 -13.61988 -13.40174 -13.25008 -13.07825 -12.93268 -12.76389 -12.63196 -12.18478 -12.06255 -11.90342 -11.70915 -11.17223 -11.10698 -11.02114 -10.99366 -10.83323 -10.63704 -10.41021 -10.24883 -10.16914 -9.87590 -9.31797 -9.17427 -8.91622 -8.90313 -8.53986 -8.36010 -7.91776 -5.99850 -4.00946 0.76704 1.57819 1.84931 2.81876 3.28735 3.30292 3.38347 3.40613 3.48108 3.94973 4.45443 4.69367 4.79158 4.86810 4.88678 4.99070 5.06382 5.18579 5.22442 5.35858 5.42339 5.48475 5.53377 5.62265 5.74398 5.76119 5.82683 6.06122 6.14893 6.19126 6.23417 6.26406 6.39816 6.52830 6.55901 6.60645 6.64429 6.66149 6.73978 6.92030 7.06773 7.08185 7.11492 7.13864 7.64274 7.73254 7.76434 7.99047 8.30758 8.41463 9.04068 9.62237 11.11676 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017481 B = 0.002958 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.353187 B = 9462.484355 C =10666.870311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.045 3.955 4 C -0.170 4.170 5 C -0.035 4.035 6 C -0.110 4.110 7 C -0.130 4.130 8 C -0.118 4.118 9 C -0.124 4.124 10 C -0.055 4.055 11 C 0.557 3.443 12 O -0.509 6.509 13 N -0.704 5.704 14 C 0.127 3.873 15 C -0.072 4.072 16 C -0.128 4.128 17 C -0.128 4.128 18 C 0.036 3.964 19 C -0.510 4.510 20 H 0.060 0.940 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.405 0.595 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.452 8.472 -0.156 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C -0.004 4.004 4 C -0.191 4.191 5 C -0.035 4.035 6 C -0.128 4.128 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.142 4.142 10 C -0.074 4.074 11 C 0.342 3.658 12 O -0.387 6.387 13 N -0.355 5.355 14 C 0.004 3.996 15 C -0.073 4.073 16 C -0.185 4.185 17 C -0.185 4.185 18 C -0.001 4.001 19 C -0.548 4.548 20 H 0.078 0.922 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.716 3.284 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.241 0.759 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.741 9.053 -0.058 23.550 hybrid contribution 0.100 -1.244 -0.019 1.248 sum -21.640 7.809 -0.076 23.006 Atomic orbital electron populations 1.23101 0.78108 1.04172 1.01451 1.86042 1.21643 1.26748 1.88190 1.21529 0.92385 0.84986 1.01452 1.22024 0.99292 0.91270 1.06492 1.18438 0.97179 0.91991 0.95919 1.21095 1.00377 0.92538 0.98765 1.20911 0.98242 0.97308 0.98369 1.21123 0.98235 0.98612 0.95671 1.20949 1.00045 0.93093 1.00128 1.21072 0.93723 0.96488 0.96079 1.17557 0.84644 0.85010 0.78608 1.90958 1.70732 1.27442 1.49529 1.46230 1.08397 1.09526 1.71311 1.21709 0.76890 0.99037 1.01966 1.20909 0.99947 0.91305 0.95123 1.21770 0.97764 1.01158 0.97838 1.21769 0.97683 1.02311 0.96734 1.19091 0.86030 0.97509 0.97486 1.21220 0.91188 0.93235 1.49190 0.92187 1.25013 0.97423 0.96490 0.95591 1.69973 1.03362 1.29407 1.50644 0.86598 0.79189 0.84922 0.77646 1.19794 1.21143 1.21139 0.92591 0.92396 0.87988 0.84690 0.86604 0.86546 0.86610 0.86400 0.87152 0.75865 0.91526 0.91535 0.95103 0.91391 0.93378 0.93377 0.91383 0.95136 0.96336 0.96334 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.83 101.05 0.99 1.17 16 2 O -0.31 -3.39 9.88 -19.53 -0.19 -3.58 16 3 C 0.04 0.57 6.71 -37.18 -0.25 0.32 16 4 C -0.17 -1.94 8.74 -37.08 -0.32 -2.26 16 5 C -0.04 -0.46 4.42 -105.07 -0.46 -0.93 16 6 C -0.11 -1.32 9.80 -39.11 -0.38 -1.70 16 7 C -0.13 -1.49 10.03 -39.65 -0.40 -1.89 16 8 C -0.12 -1.41 10.04 -39.46 -0.40 -1.80 16 9 C -0.12 -1.62 10.03 -39.65 -0.40 -2.02 16 10 C -0.06 -0.77 6.72 -39.11 -0.26 -1.04 16 11 C 0.56 8.65 6.90 -12.73 -0.09 8.56 16 12 O -0.51 -9.22 12.41 5.22 0.06 -9.16 16 13 N -0.70 -10.71 4.95 -61.53 -0.30 -11.01 16 14 C 0.13 2.24 4.56 -4.04 -0.02 2.23 16 15 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 16 C -0.13 -2.28 8.05 37.16 0.30 -1.98 16 17 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 18 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 19 C -0.51 -13.52 7.65 -34.44 -0.26 -13.79 16 20 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 23 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.31 7.49 -51.93 -0.39 -0.08 16 28 H 0.06 0.33 7.80 -51.93 -0.40 -0.08 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.14 1.13 6.27 -52.48 -0.33 0.80 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.56 7.30 -52.49 -0.38 1.18 16 36 H 0.40 5.60 5.59 -40.82 -0.23 5.37 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 40 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 44 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -31.30 377.55 -8.19 -39.49 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.22 Total: 4.39 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.95 Total: -16.33 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.43 Total: -36.68 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.13 Total: -12.74 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.30 -8.19 -39.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813704765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.407 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds