Wall clock time and date at job start Tue Mar 31 2020 11:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35932 * 117.00207 * 2 1 4 4 C 1.35065 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.47183 * 120.00356 * 191.02843 * 4 3 2 6 6 C 1.39829 * 120.17002 * 226.16859 * 5 4 3 7 7 C 1.37896 * 119.82537 * 179.74050 * 6 5 4 8 8 C 1.38402 * 120.17070 * 0.53021 * 7 6 5 9 9 C 1.38407 * 120.34126 * 359.74638 * 8 7 6 10 10 C 1.37885 * 120.17437 * 359.97426 * 9 8 7 11 11 C 1.46951 * 120.00298 * 179.97438 * 3 2 1 12 12 O 1.21665 * 120.00111 * 187.20627 * 11 3 2 13 13 N 1.34772 * 119.99740 * 7.21101 * 11 3 2 14 14 C 1.46507 * 120.00180 * 179.97438 * 13 11 3 15 15 C 1.52992 * 109.47345 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47545 * 300.00433 * 15 14 13 17 17 C 1.53004 * 109.47256 * 60.00292 * 15 14 13 18 18 C 1.53003 * 109.47396 * 180.02562 * 15 14 13 19 19 C 1.50692 * 109.47459 * 180.02562 * 18 15 14 20 20 H 1.08001 * 119.99929 * 359.97438 * 19 18 15 21 21 C 1.37879 * 120.00082 * 180.02562 * 19 18 15 22 22 N 1.31508 * 119.99901 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99815 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46594 * 120.00169 * 23 21 19 26 26 H 1.48503 * 109.47173 * 239.99699 * 23 21 19 27 27 H 1.09005 * 109.47288 * 300.00018 * 1 2 3 28 28 H 1.09000 * 109.47065 * 59.99921 * 1 2 3 29 29 H 1.09001 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00255 * 10.74709 * 4 3 2 31 31 H 1.08002 * 120.08942 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.91933 * 180.25257 * 7 6 5 33 33 H 1.07997 * 119.82817 * 179.71823 * 8 7 6 34 34 H 1.08001 * 119.91105 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.08941 * 180.02562 * 10 9 8 36 36 H 0.97000 * 120.00223 * 0.02562 * 13 11 3 37 37 H 1.09002 * 109.47154 * 300.00325 * 14 13 11 38 38 H 1.09003 * 109.46412 * 59.99844 * 14 13 11 39 39 H 1.09004 * 109.47062 * 59.99725 * 16 15 14 40 40 H 1.09000 * 109.47520 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.47104 * 300.00192 * 16 15 14 42 42 H 1.09002 * 109.47026 * 59.99825 * 17 15 14 43 43 H 1.09000 * 109.47263 * 179.97438 * 17 15 14 44 44 H 1.09004 * 109.46976 * 300.00045 * 17 15 14 45 45 H 1.09002 * 109.47005 * 300.00247 * 18 15 14 46 46 H 1.09003 * 109.46510 * 59.99735 * 18 15 14 47 47 H 0.97000 * 120.00062 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.3106 2.3439 0.0005 5 6 1.9589 3.6426 -0.2433 6 6 1.6692 4.7375 0.5767 7 6 2.2848 5.9496 0.3451 8 6 3.1789 6.0868 -0.7024 9 6 3.4664 5.0091 -1.5219 10 6 2.8634 3.7891 -1.2997 11 6 3.5137 1.2881 0.0006 12 8 4.0664 2.3638 0.1327 13 7 4.2472 0.1669 -0.1454 14 6 5.7103 0.2436 -0.1454 15 6 6.2945 -1.1587 -0.3265 16 6 5.8309 -2.0567 0.8222 17 6 5.8145 -1.7434 -1.6564 18 6 7.8224 -1.0788 -0.3259 19 6 8.3979 -2.4600 -0.5048 20 1 7.7397 -3.3099 -0.6082 21 6 9.7647 -2.6387 -0.5355 22 7 10.5662 -1.6038 -0.4091 23 14 10.4779 -4.3510 -0.7566 24 1 9.3731 -5.3359 -0.8756 25 1 11.3069 -4.3865 -1.9883 26 1 11.3211 -4.6915 0.4175 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2458 2.2964 0.1754 31 1 0.9681 4.6333 1.3915 32 1 2.0653 6.7952 0.9800 33 1 3.6544 7.0397 -0.8815 34 1 4.1649 5.1240 -2.3376 35 1 3.0890 2.9490 -1.9398 36 1 3.8066 -0.6907 -0.2512 37 1 6.0406 0.8829 -0.9641 38 1 6.0522 0.6606 0.8019 39 1 4.7423 -2.1138 0.8222 40 1 6.2474 -3.0557 0.6935 41 1 6.1728 -1.6402 1.7697 42 1 6.1448 -1.1037 -2.4749 43 1 6.2311 -2.7424 -1.7857 44 1 4.7260 -1.8005 -1.6565 45 1 8.1531 -0.4390 -1.1441 46 1 8.1640 -0.6624 0.6218 47 1 11.5277 -1.7294 -0.4310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813704765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:07 Heat of formation + Delta-G solvation = -56.958303 kcal Electronic energy + Delta-G solvation = -26601.021115 eV Core-core repulsion = 22941.631497 eV Total energy + Delta-G solvation = -3659.389617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58266 -39.82370 -39.56211 -38.54170 -35.31932 -34.05684 -33.83389 -31.73069 -30.36745 -29.08555 -28.43862 -27.97531 -27.60604 -25.25534 -24.01793 -23.26874 -22.51645 -20.79301 -19.87528 -19.13845 -18.37320 -17.95337 -17.17843 -16.86661 -16.64862 -16.33562 -16.13691 -16.00738 -15.53791 -15.46170 -15.02430 -14.76787 -14.52278 -14.22066 -14.19109 -13.94680 -13.84678 -13.72602 -13.56311 -12.89917 -12.70295 -12.61994 -12.50558 -12.37455 -12.34810 -12.23790 -12.01084 -11.95730 -11.90097 -11.54948 -11.38918 -10.96555 -10.84592 -10.51920 -10.27560 -10.07371 -9.59363 -8.84737 -8.13863 -6.21454 -0.19480 0.62889 0.89562 1.41749 1.42890 1.54635 1.91619 2.16586 2.38676 2.46460 3.01026 3.20775 3.76002 3.94679 3.97984 4.06805 4.08267 4.16957 4.21563 4.29441 4.34182 4.46463 4.60706 4.61984 4.68331 4.70798 4.75703 4.81220 4.87292 4.95365 4.95821 5.08294 5.11457 5.16564 5.22995 5.35326 5.44253 5.49195 5.51928 5.56573 5.63872 5.67570 5.71868 5.79254 5.89969 6.06691 6.20926 6.31285 6.59985 6.93703 7.12307 7.46265 8.98900 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017481 B = 0.002958 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.353187 B = 9462.484355 C =10666.870311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.036 3.964 4 C -0.153 4.153 5 C -0.054 4.054 6 C -0.116 4.116 7 C -0.135 4.135 8 C -0.127 4.127 9 C -0.144 4.144 10 C -0.076 4.076 11 C 0.553 3.447 12 O -0.541 6.541 13 N -0.697 5.697 14 C 0.142 3.858 15 C -0.065 4.065 16 C -0.122 4.122 17 C -0.121 4.121 18 C 0.041 3.959 19 C -0.512 4.512 20 H 0.072 0.928 21 C -0.005 4.005 22 N -0.938 5.938 23 Si 0.958 3.042 24 H -0.257 1.257 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.171 0.829 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.414 0.586 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.065 0.935 45 H -0.013 1.013 46 H -0.014 1.014 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.488 7.506 0.277 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C -0.012 4.012 4 C -0.174 4.174 5 C -0.054 4.054 6 C -0.134 4.134 7 C -0.152 4.152 8 C -0.145 4.145 9 C -0.162 4.162 10 C -0.094 4.094 11 C 0.340 3.660 12 O -0.421 6.421 13 N -0.348 5.348 14 C 0.018 3.982 15 C -0.065 4.065 16 C -0.179 4.179 17 C -0.179 4.179 18 C 0.004 3.996 19 C -0.550 4.550 20 H 0.090 0.910 21 C -0.202 4.202 22 N -0.580 5.580 23 Si 0.783 3.217 24 H -0.181 1.181 25 H -0.210 1.210 26 H -0.211 1.211 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.188 0.812 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.252 0.748 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.005 0.995 46 H 0.005 0.995 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.821 8.060 0.370 26.099 hybrid contribution 0.984 -0.843 -0.149 1.304 sum -23.837 7.217 0.221 24.906 Atomic orbital electron populations 1.23449 0.75712 1.06015 1.02605 1.86012 1.23950 1.25524 1.88224 1.21020 0.90677 0.86260 1.03259 1.22314 1.00723 0.89976 1.04427 1.18734 0.97364 0.93351 0.95984 1.21457 1.00640 0.92302 0.99024 1.21308 0.97502 0.98159 0.98265 1.21441 0.98397 0.99093 0.95555 1.21177 1.00518 0.93564 1.00952 1.21120 0.94871 0.96481 0.96954 1.18033 0.86171 0.84273 0.77546 1.90944 1.71935 1.28477 1.50697 1.46015 1.06928 1.10246 1.71640 1.21278 0.78774 0.97701 1.00447 1.20712 0.96181 0.92632 0.96984 1.21692 0.99936 0.99776 0.96484 1.21690 0.99866 1.01105 0.95190 1.18957 0.90144 0.96081 0.94438 1.21616 0.91492 0.94197 1.47737 0.90958 1.25939 0.98159 1.00503 0.95576 1.70124 1.03602 1.31896 1.52336 0.85498 0.78599 0.80238 0.77323 1.18051 1.21045 1.21054 0.91217 0.91340 0.85950 0.81238 0.84179 0.83851 0.84571 0.86011 0.88464 0.74757 0.93075 0.93264 0.91571 0.92415 0.94369 0.94278 0.92428 0.91577 0.99463 0.99528 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 113.37 1.11 1.27 16 2 O -0.32 -6.11 9.88 -92.78 -0.92 -7.03 16 3 C 0.04 0.85 6.71 23.82 0.16 1.01 16 4 C -0.15 -3.17 8.74 23.89 0.21 -2.96 16 5 C -0.05 -1.37 4.42 -20.16 -0.09 -1.46 16 6 C -0.12 -2.56 9.80 22.57 0.22 -2.34 16 7 C -0.13 -2.84 10.03 22.23 0.22 -2.62 16 8 C -0.13 -2.92 10.04 22.35 0.22 -2.70 16 9 C -0.14 -3.84 10.03 22.23 0.22 -3.62 16 10 C -0.08 -2.16 6.72 22.57 0.15 -2.01 16 11 C 0.55 17.01 6.90 86.53 0.60 17.61 16 12 O -0.54 -20.03 12.41 -4.24 -0.05 -20.08 16 13 N -0.70 -20.81 4.95 -466.82 -2.31 -23.12 16 14 C 0.14 5.18 4.56 86.38 0.39 5.58 16 15 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 16 C -0.12 -4.22 8.05 71.98 0.58 -3.64 16 17 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 18 C 0.04 2.12 4.04 29.85 0.12 2.24 16 19 C -0.51 -27.58 7.65 25.60 0.20 -27.38 16 20 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 21 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 22 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 23 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 H 0.07 0.50 7.49 -2.38 -0.02 0.48 16 28 H 0.07 0.53 7.80 -2.39 -0.02 0.51 16 29 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.17 2.20 6.27 -2.91 -0.02 2.18 16 31 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.10 2.89 7.30 -2.91 -0.02 2.87 16 36 H 0.41 10.63 5.59 -92.71 -0.52 10.11 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 40 H 0.06 2.12 6.62 -2.39 -0.02 2.11 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 44 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 45 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 46 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -70.43 377.55 4.81 -65.61 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.45 Total: 22.76 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 5.34 Total: -26.96 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -2.03 Total: -80.09 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.97 Total: -27.11 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.43 4.81 -65.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813704765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.653 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds