Wall clock time and date at job start Tue Mar 31 2020 12:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47083 * 2 1 4 4 C 1.53001 * 109.46905 * 119.99873 * 2 1 3 5 5 N 1.46899 * 109.46935 * 109.69884 * 4 2 1 6 6 C 1.46899 * 111.00470 * 60.53088 * 5 4 2 7 7 C 1.50701 * 109.46861 * 63.94614 * 6 5 4 8 8 H 1.08003 * 120.00357 * 5.09010 * 7 6 5 9 9 C 1.37882 * 119.99697 * 185.09087 * 7 6 5 10 10 N 1.31510 * 120.00379 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99783 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46869 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47179 * 119.99632 * 11 9 7 14 14 H 1.48502 * 109.47131 * 239.99982 * 11 9 7 15 15 C 1.46902 * 110.99910 * 296.57507 * 5 4 2 16 16 C 1.52998 * 109.47525 * 279.48459 * 15 5 4 17 17 H 1.09001 * 109.47119 * 306.92401 * 16 15 5 18 18 O 1.42902 * 109.46983 * 66.91686 * 16 15 5 19 19 C 1.50692 * 109.47235 * 186.92016 * 16 15 5 20 20 C 1.33999 * 124.92486 * 100.05344 * 19 16 15 21 21 C 1.46778 * 106.18858 * 179.97438 * 20 19 16 22 22 C 1.39405 * 134.37289 * 180.02562 * 21 20 19 23 23 C 1.36732 * 119.71744 * 179.97438 * 22 21 20 24 24 C 1.38745 * 120.42060 * 359.97438 * 23 22 21 25 25 C 1.37848 * 120.68321 * 0.02562 * 24 23 22 26 26 C 1.38939 * 119.81709 * 0.02562 * 25 24 23 27 27 O 1.34452 * 124.92341 * 279.97252 * 19 16 15 28 28 H 1.08997 * 109.47316 * 196.17692 * 1 2 3 29 29 H 1.09000 * 109.47393 * 316.17875 * 1 2 3 30 30 H 1.09008 * 109.46791 * 76.17372 * 1 2 3 31 31 H 1.08998 * 109.47446 * 240.00273 * 2 1 3 32 32 H 1.08997 * 109.46592 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47116 * 299.99540 * 3 2 1 34 34 H 1.08998 * 109.46710 * 60.00405 * 3 2 1 35 35 H 1.08998 * 109.46954 * 349.69992 * 4 2 1 36 36 H 1.09001 * 109.47077 * 229.69928 * 4 2 1 37 37 H 1.08996 * 109.47860 * 183.95178 * 6 5 4 38 38 H 1.09005 * 109.46794 * 303.95547 * 6 5 4 39 39 H 0.96993 * 119.99896 * 180.02562 * 10 9 7 40 40 H 1.09009 * 109.47007 * 159.48180 * 15 5 4 41 41 H 1.09003 * 109.47002 * 39.49054 * 15 5 4 42 42 H 0.96702 * 113.99802 * 70.00687 * 18 16 15 43 43 H 1.08006 * 126.90489 * 359.96160 * 20 19 16 44 44 H 1.08001 * 120.14141 * 0.02562 * 22 21 20 45 45 H 1.08008 * 119.79261 * 180.02562 * 23 22 21 46 46 H 1.07999 * 119.65868 * 179.97438 * 24 23 22 47 47 H 1.08005 * 120.09261 * 179.72250 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 2.6433 -2.0035 0.8624 6 6 3.7788 -1.7981 -0.0467 7 6 4.8666 -1.0418 0.6714 8 1 4.7636 -0.8153 1.7224 9 6 5.9935 -0.6389 -0.0134 10 7 6.1188 -0.9141 -1.2932 11 14 7.3423 0.2980 0.8769 12 1 6.9617 0.4798 2.3007 13 1 8.6122 -0.4676 0.7973 14 1 7.5248 1.6272 0.2402 15 6 1.6429 -2.8961 0.2618 16 6 0.8290 -3.5684 1.3692 17 1 1.5052 -4.0451 2.0788 18 8 0.0434 -2.5855 2.0466 19 6 -0.0792 -4.6079 0.7646 20 6 0.1663 -5.9251 0.7485 21 6 -0.9754 -6.5458 0.0662 22 6 -1.3188 -7.8558 -0.2646 23 6 -2.4921 -8.1037 -0.9216 24 6 -3.3418 -7.0603 -1.2598 25 6 -3.0190 -5.7586 -0.9410 26 6 -1.8310 -5.4849 -0.2745 27 8 -1.2540 -4.3483 0.1645 28 1 -0.3634 -0.9869 0.2863 29 1 -0.3634 0.7415 0.7116 30 1 -0.3633 0.2456 -0.9980 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.2077 -0.9018 1.9296 36 1 2.7877 -0.1030 1.7459 37 1 4.1627 -2.7647 -0.3728 38 1 3.4506 -1.2260 -0.9145 39 1 6.9117 -0.6310 -1.7748 40 1 2.1465 -3.6583 -0.3329 41 1 0.9771 -2.3172 -0.3782 42 1 -0.6828 -2.2290 1.5169 43 1 1.0307 -6.4288 1.1555 44 1 -0.6613 -8.6715 -0.0024 45 1 -2.7595 -9.1182 -1.1781 46 1 -4.2653 -7.2701 -1.7790 47 1 -3.6853 -4.9533 -1.2129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815052356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:14 Heat of formation + Delta-G solvation = -21.204696 kcal Electronic energy + Delta-G solvation = -27027.790318 eV Core-core repulsion = 23369.951094 eV Total energy + Delta-G solvation = -3657.839225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58760 -38.76571 -37.93722 -36.22680 -33.61406 -33.05466 -32.35258 -30.57599 -30.51021 -28.18914 -26.74885 -26.57488 -24.79039 -23.31399 -22.74254 -21.69524 -21.09822 -21.01769 -19.13366 -17.64175 -17.44862 -16.44926 -16.22963 -16.08801 -15.64780 -15.11672 -14.83643 -14.44760 -14.24803 -14.12188 -13.86328 -13.48355 -13.22030 -12.98310 -12.84944 -12.70691 -12.45159 -12.22075 -12.13298 -11.82531 -11.64399 -11.27352 -11.18637 -11.04400 -10.91221 -10.74990 -10.61620 -10.53647 -10.38456 -10.20966 -10.15946 -9.88326 -9.46981 -9.07620 -8.78044 -8.43188 -8.26326 -7.13548 -6.01871 -4.02052 0.74265 1.19470 2.22707 2.52991 3.30858 3.38905 3.43750 3.55112 4.13967 4.43363 4.47147 4.50775 4.74844 4.88602 4.94825 5.08793 5.17989 5.27957 5.32343 5.35133 5.43192 5.47449 5.55050 5.56964 5.64485 5.69624 5.96922 6.03571 6.06636 6.08537 6.13882 6.22684 6.24446 6.26671 6.30036 6.33442 6.50332 6.53475 6.61175 6.72428 6.96989 7.05021 7.12424 7.32694 7.43995 7.64501 7.82486 8.09662 8.22936 8.56203 9.06524 9.61833 11.08920 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.003126 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.565824 B = 8954.381738 C = 9726.916267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C -0.138 4.138 4 C 0.060 3.940 5 N -0.527 5.527 6 C 0.187 3.813 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.021 3.979 16 C 0.194 3.806 17 H 0.136 0.864 18 O -0.541 6.541 19 C 0.014 3.986 20 C -0.201 4.201 21 C -0.126 4.126 22 C -0.072 4.072 23 C -0.139 4.139 24 C -0.099 4.099 25 C -0.106 4.106 26 C 0.051 3.949 27 O -0.191 6.191 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.003 0.997 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.373 0.627 43 H 0.161 0.839 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 -9.492 0.961 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.195 4.195 4 C -0.068 4.068 5 N -0.250 5.250 6 C 0.063 3.937 7 C -0.538 4.538 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.108 4.108 16 C 0.135 3.865 17 H 0.153 0.847 18 O -0.348 6.348 19 C -0.034 4.034 20 C -0.220 4.220 21 C -0.127 4.127 22 C -0.090 4.090 23 C -0.157 4.157 24 C -0.117 4.117 25 C -0.125 4.125 26 C 0.004 3.996 27 O -0.093 6.093 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.021 0.979 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.222 0.778 43 H 0.179 0.821 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.599 -9.551 1.690 20.095 hybrid contribution 0.277 0.779 -1.057 1.342 sum -17.322 -8.773 0.634 19.427 Atomic orbital electron populations 1.22033 0.96652 1.00644 1.00625 1.21800 0.94257 0.97560 1.01538 1.21790 1.02496 0.95465 0.99794 1.22452 0.99016 0.89964 0.95343 1.62209 1.07223 1.12326 1.43213 1.19841 0.86812 0.96461 0.90613 1.21146 1.01876 1.34476 0.96319 0.91845 1.24960 0.98375 0.96403 0.94808 1.69961 1.28580 1.47267 1.08047 0.86515 0.81923 0.79486 0.79971 1.19622 1.21111 1.21199 1.22734 0.95695 0.97855 0.94552 1.20951 0.87464 0.84000 0.94124 0.84656 1.86644 1.46702 1.57292 1.44121 1.23617 0.85902 0.96889 0.97037 1.22286 1.00359 0.92642 1.06719 1.19987 0.95702 0.94437 1.02603 1.20306 0.96765 0.94482 0.97426 1.20764 0.94834 0.99428 1.00653 1.20902 0.99837 0.91236 0.99711 1.19948 0.93976 0.97651 1.00914 1.19662 0.95978 0.83714 1.00243 1.83905 1.30986 1.32561 1.61827 0.93412 0.92989 0.93847 0.90865 0.91300 0.94253 0.93622 0.90339 0.90360 0.95882 0.97916 0.93084 0.90610 0.93855 0.77846 0.82113 0.85512 0.85456 0.84916 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.64 37.16 0.32 -1.69 16 2 C -0.13 -2.32 1.96 -90.62 -0.18 -2.49 16 3 C -0.14 -2.40 8.83 37.16 0.33 -2.08 16 4 C 0.06 1.14 4.92 -3.82 -0.02 1.12 16 5 N -0.53 -10.78 4.62 -236.07 -1.09 -11.87 16 6 C 0.19 4.68 4.41 -4.98 -0.02 4.66 16 7 C -0.50 -13.57 8.38 -34.44 -0.29 -13.86 16 8 H 0.06 1.73 7.16 -52.48 -0.38 1.36 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 11 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 15 C 0.02 0.36 4.47 -3.82 -0.02 0.34 16 16 C 0.19 2.83 3.66 -27.89 -0.10 2.73 16 17 H 0.14 1.97 8.12 -51.93 -0.42 1.55 16 18 O -0.54 -7.81 10.50 -38.78 -0.41 -8.21 16 19 C 0.01 0.19 6.09 -35.80 -0.22 -0.02 16 20 C -0.20 -2.64 10.99 -37.62 -0.41 -3.05 16 21 C -0.13 -1.64 6.40 -105.16 -0.67 -2.31 16 22 C -0.07 -0.75 10.05 -39.69 -0.40 -1.15 16 23 C -0.14 -1.23 9.98 -39.94 -0.40 -1.63 16 24 C -0.10 -0.86 10.01 -39.54 -0.40 -1.26 16 25 C -0.11 -1.12 10.07 -39.46 -0.40 -1.52 16 26 C 0.05 0.68 7.42 -38.47 -0.29 0.40 16 27 O -0.19 -2.71 10.24 0.34 0.00 -2.70 16 28 H 0.05 0.63 4.33 -51.93 -0.23 0.40 16 29 H 0.05 0.67 8.04 -51.93 -0.42 0.26 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.07 1.49 5.25 -51.93 -0.27 1.22 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.36 5.03 -51.93 -0.26 1.10 16 36 H 0.08 1.65 6.29 -51.93 -0.33 1.33 16 37 H 0.02 0.62 7.86 -51.93 -0.41 0.21 16 38 H 0.00 0.08 6.00 -51.93 -0.31 -0.23 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.08 1.34 7.67 -51.92 -0.40 0.94 16 41 H 0.04 0.73 5.11 -51.93 -0.27 0.47 16 42 H 0.37 4.61 6.51 45.56 0.30 4.91 16 43 H 0.16 1.79 8.06 -52.48 -0.42 1.36 16 44 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -30.31 369.78 -9.79 -40.10 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.33 Total: 6.55 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -3.25 Total: -20.36 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.35 Total: -37.36 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.40 Total: -10.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.31 -9.79 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815052356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.893 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds