Wall clock time and date at job start Tue Mar 31 2020 12:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47083 * 2 1 4 4 C 1.53001 * 109.46905 * 119.99873 * 2 1 3 5 5 N 1.46899 * 109.46935 * 109.69884 * 4 2 1 6 6 C 1.46899 * 111.00470 * 60.53088 * 5 4 2 7 7 C 1.50701 * 109.46861 * 63.94614 * 6 5 4 8 8 H 1.08003 * 120.00357 * 5.09010 * 7 6 5 9 9 C 1.37882 * 119.99697 * 185.09087 * 7 6 5 10 10 N 1.31510 * 120.00379 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99783 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46869 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47179 * 119.99632 * 11 9 7 14 14 H 1.48502 * 109.47131 * 239.99982 * 11 9 7 15 15 C 1.46902 * 110.99910 * 296.57507 * 5 4 2 16 16 C 1.52998 * 109.47525 * 279.48459 * 15 5 4 17 17 H 1.09001 * 109.47119 * 306.92401 * 16 15 5 18 18 O 1.42902 * 109.46983 * 66.91686 * 16 15 5 19 19 C 1.50692 * 109.47235 * 186.92016 * 16 15 5 20 20 C 1.33999 * 124.92486 * 100.05344 * 19 16 15 21 21 C 1.46778 * 106.18858 * 179.97438 * 20 19 16 22 22 C 1.39405 * 134.37289 * 180.02562 * 21 20 19 23 23 C 1.36732 * 119.71744 * 179.97438 * 22 21 20 24 24 C 1.38745 * 120.42060 * 359.97438 * 23 22 21 25 25 C 1.37848 * 120.68321 * 0.02562 * 24 23 22 26 26 C 1.38939 * 119.81709 * 0.02562 * 25 24 23 27 27 O 1.34452 * 124.92341 * 279.97252 * 19 16 15 28 28 H 1.08997 * 109.47316 * 196.17692 * 1 2 3 29 29 H 1.09000 * 109.47393 * 316.17875 * 1 2 3 30 30 H 1.09008 * 109.46791 * 76.17372 * 1 2 3 31 31 H 1.08998 * 109.47446 * 240.00273 * 2 1 3 32 32 H 1.08997 * 109.46592 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47116 * 299.99540 * 3 2 1 34 34 H 1.08998 * 109.46710 * 60.00405 * 3 2 1 35 35 H 1.08998 * 109.46954 * 349.69992 * 4 2 1 36 36 H 1.09001 * 109.47077 * 229.69928 * 4 2 1 37 37 H 1.08996 * 109.47860 * 183.95178 * 6 5 4 38 38 H 1.09005 * 109.46794 * 303.95547 * 6 5 4 39 39 H 0.96993 * 119.99896 * 180.02562 * 10 9 7 40 40 H 1.09009 * 109.47007 * 159.48180 * 15 5 4 41 41 H 1.09003 * 109.47002 * 39.49054 * 15 5 4 42 42 H 0.96702 * 113.99802 * 70.00687 * 18 16 15 43 43 H 1.08006 * 126.90489 * 359.96160 * 20 19 16 44 44 H 1.08001 * 120.14141 * 0.02562 * 22 21 20 45 45 H 1.08008 * 119.79261 * 180.02562 * 23 22 21 46 46 H 1.07999 * 119.65868 * 179.97438 * 24 23 22 47 47 H 1.08005 * 120.09261 * 179.72250 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 2.6433 -2.0035 0.8624 6 6 3.7788 -1.7981 -0.0467 7 6 4.8666 -1.0418 0.6714 8 1 4.7636 -0.8153 1.7224 9 6 5.9935 -0.6389 -0.0134 10 7 6.1188 -0.9141 -1.2932 11 14 7.3423 0.2980 0.8769 12 1 6.9617 0.4798 2.3007 13 1 8.6122 -0.4676 0.7973 14 1 7.5248 1.6272 0.2402 15 6 1.6429 -2.8961 0.2618 16 6 0.8290 -3.5684 1.3692 17 1 1.5052 -4.0451 2.0788 18 8 0.0434 -2.5855 2.0466 19 6 -0.0792 -4.6079 0.7646 20 6 0.1663 -5.9251 0.7485 21 6 -0.9754 -6.5458 0.0662 22 6 -1.3188 -7.8558 -0.2646 23 6 -2.4921 -8.1037 -0.9216 24 6 -3.3418 -7.0603 -1.2598 25 6 -3.0190 -5.7586 -0.9410 26 6 -1.8310 -5.4849 -0.2745 27 8 -1.2540 -4.3483 0.1645 28 1 -0.3634 -0.9869 0.2863 29 1 -0.3634 0.7415 0.7116 30 1 -0.3633 0.2456 -0.9980 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.2077 -0.9018 1.9296 36 1 2.7877 -0.1030 1.7459 37 1 4.1627 -2.7647 -0.3728 38 1 3.4506 -1.2260 -0.9145 39 1 6.9117 -0.6310 -1.7748 40 1 2.1465 -3.6583 -0.3329 41 1 0.9771 -2.3172 -0.3782 42 1 -0.6828 -2.2290 1.5169 43 1 1.0307 -6.4288 1.1555 44 1 -0.6613 -8.6715 -0.0024 45 1 -2.7595 -9.1182 -1.1781 46 1 -4.2653 -7.2701 -1.7790 47 1 -3.6853 -4.9533 -1.2129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815052356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:13 Heat of formation + Delta-G solvation = -39.748019 kcal Electronic energy + Delta-G solvation = -27028.594417 eV Core-core repulsion = 23369.951094 eV Total energy + Delta-G solvation = -3658.643324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.52482 -40.14968 -38.83745 -37.51592 -35.26720 -34.38170 -33.89745 -31.64423 -31.36593 -29.67334 -28.28299 -27.97214 -26.33976 -24.62923 -23.83574 -22.79904 -22.48616 -22.05430 -20.69268 -18.69596 -18.33854 -18.31041 -17.41236 -17.20021 -16.96122 -16.70821 -16.06100 -15.81376 -15.62906 -15.25845 -14.96982 -14.69949 -14.44251 -14.20656 -14.13079 -14.10502 -13.98511 -13.29294 -13.15226 -13.08195 -12.89852 -12.83535 -12.77128 -12.54430 -12.50863 -12.15925 -12.07952 -12.00542 -11.89655 -11.72774 -11.57214 -11.22370 -11.13544 -10.74224 -10.58659 -9.61273 -9.18026 -8.83017 -8.17169 -6.24792 -0.09978 0.38409 1.26380 1.39442 1.40852 1.53584 1.58098 2.41215 2.76313 3.05576 3.16136 3.32565 3.56323 3.70357 3.95537 4.01160 4.09222 4.10616 4.14298 4.17997 4.22978 4.27682 4.39685 4.48904 4.59892 4.67803 4.79008 4.79516 4.80277 4.90652 4.91352 5.04450 5.04857 5.13036 5.19998 5.25400 5.32363 5.34643 5.36564 5.43969 5.50488 5.54381 5.62658 5.72136 5.74085 6.10363 6.14065 6.39519 6.57122 6.69084 6.92308 7.43908 8.93796 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.003126 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.565824 B = 8954.381738 C = 9726.916267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C -0.133 4.133 4 C 0.065 3.935 5 N -0.532 5.532 6 C 0.205 3.795 7 C -0.508 4.508 8 H 0.059 0.941 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.959 3.041 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.026 3.974 16 C 0.211 3.789 17 H 0.135 0.865 18 O -0.546 6.546 19 C -0.005 4.005 20 C -0.201 4.201 21 C -0.154 4.154 22 C -0.083 4.083 23 C -0.135 4.135 24 C -0.088 4.088 25 C -0.120 4.120 26 C 0.024 3.976 27 O -0.203 6.203 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.052 0.948 37 H -0.005 1.005 38 H -0.021 1.021 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.382 0.618 43 H 0.174 0.826 44 H 0.144 0.856 45 H 0.161 0.839 46 H 0.169 0.831 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.457 -10.273 1.445 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.148 4.148 3 C -0.191 4.191 4 C -0.062 4.062 5 N -0.255 5.255 6 C 0.079 3.921 7 C -0.546 4.546 8 H 0.077 0.923 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.785 3.215 12 H -0.188 1.188 13 H -0.206 1.206 14 H -0.207 1.207 15 C -0.103 4.103 16 C 0.152 3.848 17 H 0.153 0.847 18 O -0.353 6.353 19 C -0.053 4.053 20 C -0.220 4.220 21 C -0.155 4.155 22 C -0.101 4.101 23 C -0.152 4.152 24 C -0.106 4.106 25 C -0.139 4.139 26 C -0.023 4.023 27 O -0.105 6.105 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.013 0.987 38 H -0.004 1.004 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.233 0.767 43 H 0.191 0.809 44 H 0.162 0.838 45 H 0.178 0.822 46 H 0.187 0.813 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.852 -10.336 2.185 22.487 hybrid contribution 0.839 0.902 -1.274 1.772 sum -19.012 -9.434 0.911 21.244 Atomic orbital electron populations 1.21940 0.93392 1.01910 1.01854 1.21703 0.96946 0.96998 0.99156 1.21735 0.99970 0.95831 1.01565 1.22441 0.98710 0.88964 0.96125 1.62112 1.07514 1.13692 1.42151 1.19451 0.88165 0.94092 0.90387 1.21385 1.02636 1.34443 0.96165 0.92275 1.25789 1.00749 0.97295 0.95497 1.70084 1.29397 1.48478 1.09545 0.85477 0.78864 0.78134 0.79048 1.18798 1.20591 1.20669 1.22732 0.94994 0.96942 0.95586 1.20556 0.87413 0.83985 0.92889 0.84728 1.86606 1.47006 1.57326 1.44386 1.23319 0.86481 0.96827 0.98661 1.22591 1.00828 0.92665 1.05951 1.20263 0.95797 0.95657 1.03775 1.20657 0.97901 0.93955 0.97559 1.21230 0.93808 1.01174 0.99021 1.21413 1.00748 0.90267 0.98178 1.20358 0.93455 0.99228 1.00830 1.20189 0.97216 0.83501 1.01398 1.83842 1.31052 1.33358 1.62290 0.92527 0.91001 0.93003 0.94235 0.95133 0.92920 0.91351 0.88195 0.92895 0.98703 1.00382 0.92948 0.91880 0.93618 0.76735 0.80878 0.83843 0.82169 0.81343 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.64 71.98 0.62 -2.95 16 2 C -0.13 -4.56 1.96 -10.79 -0.02 -4.58 16 3 C -0.13 -4.68 8.83 71.98 0.64 -4.04 16 4 C 0.07 2.51 4.92 86.30 0.43 2.93 16 5 N -0.53 -22.60 4.62 -900.78 -4.16 -26.76 16 6 C 0.21 10.82 4.41 85.56 0.38 11.20 16 7 C -0.51 -28.61 8.38 25.60 0.21 -28.39 16 8 H 0.06 3.32 7.16 -2.91 -0.02 3.30 16 9 C 0.00 0.25 5.46 84.66 0.46 0.71 16 10 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 11 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 C 0.03 0.94 4.47 86.30 0.39 1.32 16 16 C 0.21 6.22 3.66 29.84 0.11 6.33 16 17 H 0.14 3.96 8.12 -2.39 -0.02 3.94 16 18 O -0.55 -15.30 10.50 -145.59 -1.53 -16.83 16 19 C 0.00 -0.13 6.09 24.72 0.15 0.02 16 20 C -0.20 -5.32 10.99 23.54 0.26 -5.06 16 21 C -0.15 -3.90 6.40 -20.21 -0.13 -4.03 16 22 C -0.08 -1.59 10.05 22.20 0.22 -1.36 16 23 C -0.13 -1.94 9.98 22.04 0.22 -1.72 16 24 C -0.09 -1.25 10.01 22.30 0.22 -1.02 16 25 C -0.12 -2.32 10.07 22.35 0.23 -2.10 16 26 C 0.02 0.62 7.42 22.99 0.17 0.79 16 27 O -0.20 -5.77 10.24 -5.62 -0.06 -5.83 16 28 H 0.06 1.40 4.33 -2.39 -0.01 1.39 16 29 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.04 1.68 5.25 -2.39 -0.01 1.67 16 32 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 3.39 5.03 -2.39 -0.01 3.38 16 36 H 0.05 2.29 6.29 -2.39 -0.02 2.27 16 37 H -0.01 -0.29 7.86 -2.39 -0.02 -0.31 16 38 H -0.02 -1.22 6.00 -2.38 -0.01 -1.24 16 39 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.06 2.38 7.67 -2.38 -0.02 2.36 16 41 H 0.05 1.60 5.11 -2.39 -0.01 1.58 16 42 H 0.38 8.99 6.51 -74.06 -0.48 8.51 16 43 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 44 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 46 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -68.29 369.78 1.62 -66.68 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.50 Total: 23.97 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.55 Total: -31.96 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -3.88 Total: -82.80 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.59 Total: -22.66 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.29 1.62 -66.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815052356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.929 kcal (2) G-P(sol) polarization free energy of solvation -68.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds