Wall clock time and date at job start Tue Mar 31 2020 12:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20760 * 120.00474 * 2 1 4 4 C 1.50698 * 120.00292 * 179.97438 * 2 1 3 5 5 N 1.46496 * 109.47684 * 179.97438 * 4 2 1 6 6 C 1.46497 * 120.00381 * 269.99918 * 5 4 2 7 7 C 1.52992 * 109.47188 * 270.00069 * 6 5 4 8 8 C 1.52995 * 109.47364 * 65.00049 * 7 6 5 9 9 C 1.53009 * 109.47091 * 184.99749 * 7 6 5 10 10 C 1.34782 * 119.99890 * 89.99821 * 5 4 2 11 11 O 1.21282 * 119.99940 * 0.02562 * 10 5 4 12 12 C 1.50696 * 120.00157 * 179.97438 * 10 5 4 13 13 C 1.50696 * 109.47116 * 179.97438 * 12 10 5 14 14 C 1.37640 * 120.13080 * 265.00230 * 13 12 10 15 15 C 1.38613 * 120.24902 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.50186 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.24953 * 0.02769 * 16 15 14 18 18 C 1.40703 * 120.12602 * 84.73016 * 13 12 10 19 19 C 1.41399 * 120.24228 * 359.97438 * 18 13 12 20 20 H 1.07999 * 120.00139 * 329.69695 * 19 18 13 21 21 C 1.39949 * 119.99785 * 149.69527 * 19 18 13 22 22 N 1.30823 * 119.99667 * 162.01721 * 21 19 18 23 23 Si 1.86799 * 120.00057 * 342.02117 * 21 19 18 24 24 H 1.48502 * 109.47158 * 95.40081 * 23 21 19 25 25 H 1.48494 * 109.46787 * 215.39922 * 23 21 19 26 26 H 1.48500 * 109.47187 * 335.39960 * 23 21 19 27 27 H 1.08993 * 109.47107 * 270.00133 * 1 2 3 28 28 H 1.09004 * 109.46715 * 30.00262 * 1 2 3 29 29 H 1.08996 * 109.46781 * 150.00042 * 1 2 3 30 30 H 1.09003 * 109.47124 * 59.99795 * 4 2 1 31 31 H 1.09004 * 109.46954 * 300.00361 * 4 2 1 32 32 H 1.09002 * 109.46524 * 29.99988 * 6 5 4 33 33 H 1.08997 * 109.47221 * 149.99668 * 6 5 4 34 34 H 1.08997 * 109.47420 * 304.99298 * 7 6 5 35 35 H 1.09003 * 109.46816 * 299.99635 * 8 7 6 36 36 H 1.08995 * 109.47730 * 59.99732 * 8 7 6 37 37 H 1.09007 * 109.47448 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.46738 * 59.99954 * 9 7 6 39 39 H 1.08997 * 109.47020 * 180.02562 * 9 7 6 40 40 H 1.08997 * 109.46620 * 300.00039 * 9 7 6 41 41 H 1.09000 * 109.47252 * 300.00417 * 12 10 5 42 42 H 1.09004 * 109.46812 * 60.00676 * 12 10 5 43 43 H 1.07993 * 119.87403 * 0.02562 * 14 13 12 44 44 H 1.07999 * 119.74961 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.87668 * 180.02562 * 16 15 14 46 46 H 1.08001 * 120.12934 * 179.97438 * 17 16 15 47 47 H 0.96997 * 119.99798 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 7 3.7009 -1.0374 -0.0002 6 6 4.4206 -0.9045 -1.2692 7 6 4.9347 -2.2763 -1.7101 8 6 3.7475 -3.1929 -2.0123 9 6 5.7912 -2.1198 -2.9683 10 6 4.3639 -0.9135 1.1668 11 8 3.7681 -1.0240 2.2174 12 6 5.8456 -0.6388 1.1661 13 6 6.3398 -0.5453 2.5866 14 6 6.4463 0.6814 3.2018 15 6 6.9001 0.7702 4.5085 16 6 7.2520 -0.3726 5.2105 17 6 7.1546 -1.6093 4.6152 18 6 6.6887 -1.7121 3.2912 19 6 6.5774 -2.9783 2.6716 20 1 5.8226 -3.1460 1.9176 21 6 7.4454 -4.0140 3.0355 22 7 7.1422 -5.2534 2.7463 23 14 9.0366 -3.6269 3.9340 24 1 8.8282 -3.7764 5.3967 25 1 10.0981 -4.5642 3.4869 26 1 9.4486 -2.2324 3.6326 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9972 -1.8771 -0.8891 31 1 1.9972 -1.8763 0.8908 32 1 3.7473 -0.5074 -2.0288 33 1 5.2631 -0.2252 -1.1396 34 1 5.5366 -2.7123 -0.9128 35 1 3.1373 -3.3044 -1.1159 36 1 3.1456 -2.7570 -2.8096 37 1 4.1137 -4.1705 -2.3260 38 1 6.6371 -1.4668 -2.7530 39 1 6.1571 -3.0972 -3.2826 40 1 5.1893 -1.6838 -3.7655 41 1 6.3649 -1.4480 0.6528 42 1 6.0404 0.3022 0.6514 43 1 6.1745 1.5780 2.6646 44 1 6.9801 1.7368 4.9835 45 1 7.6040 -0.2917 6.2283 46 1 7.4297 -2.4981 5.1636 47 1 7.7439 -5.9712 2.9982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817618401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:47 Heat of formation + Delta-G solvation = -64.104832 kcal Electronic energy + Delta-G solvation = -27704.675640 eV Core-core repulsion = 24044.976126 eV Total energy + Delta-G solvation = -3659.699514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16600 -38.71058 -37.60322 -36.47786 -33.53374 -33.48235 -31.95648 -30.86579 -30.25453 -28.31600 -27.02223 -26.60194 -25.35620 -24.53285 -21.37582 -20.80892 -20.18573 -19.59221 -18.40546 -17.28285 -16.62784 -16.41719 -16.11423 -15.53674 -14.96725 -14.75981 -14.66087 -14.41345 -14.12939 -13.82040 -13.59079 -13.36373 -13.15367 -12.66985 -12.62248 -12.47318 -12.45848 -12.21799 -12.09659 -11.90360 -11.77996 -11.71621 -11.33563 -11.20135 -11.09212 -10.81324 -10.75732 -10.66233 -10.52319 -10.19123 -9.87571 -9.64950 -9.49575 -9.14707 -9.06806 -8.27246 -7.52883 -7.43620 -6.88742 -4.41862 2.01423 2.61435 2.78008 3.16196 3.20645 3.28018 3.34684 3.36792 4.03453 4.18915 4.56709 4.85192 4.90701 4.97758 4.99966 5.10504 5.28551 5.34960 5.39348 5.42992 5.52320 5.61303 5.66361 5.75051 5.77940 5.83982 5.88502 5.92840 5.95271 6.04133 6.17360 6.19194 6.25477 6.31281 6.32804 6.42923 6.65910 6.76739 6.79691 7.01508 7.27089 7.48424 7.57676 7.72551 7.77123 7.83888 7.97565 8.21182 8.41586 8.74827 8.83810 8.88508 10.13472 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005044 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.154812 B = 5549.556905 C = 6769.252842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.335 3.665 3 O -0.448 6.448 4 C 0.061 3.939 5 N -0.612 5.612 6 C 0.122 3.878 7 C -0.122 4.122 8 C -0.147 4.147 9 C -0.143 4.143 10 C 0.526 3.474 11 O -0.521 6.521 12 C -0.070 4.070 13 C -0.166 4.166 14 C -0.069 4.069 15 C -0.241 4.241 16 C -0.081 4.081 17 C -0.234 4.234 18 C 0.110 3.890 19 C -0.443 4.443 20 H 0.088 0.912 21 C 0.086 3.914 22 N -0.811 5.811 23 Si 0.908 3.092 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.244 1.244 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 4.045 -11.545 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.208 3.792 3 O -0.321 6.321 4 C -0.063 4.063 5 N -0.346 5.346 6 C -0.002 4.002 7 C -0.142 4.142 8 C -0.205 4.205 9 C -0.201 4.201 10 C 0.315 3.685 11 O -0.395 6.395 12 C -0.110 4.110 13 C -0.168 4.168 14 C -0.087 4.087 15 C -0.260 4.260 16 C -0.099 4.099 17 C -0.253 4.253 18 C 0.107 3.893 19 C -0.472 4.472 20 H 0.106 0.894 21 C -0.132 4.132 22 N -0.436 5.436 23 Si 0.735 3.265 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.167 1.167 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.116 0.884 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.099 4.255 -10.992 13.759 hybrid contribution 0.473 -0.203 0.418 0.663 sum -6.625 4.052 -10.573 13.119 Atomic orbital electron populations 1.22266 0.94552 1.04388 1.04785 1.25306 0.91969 0.91266 0.70657 1.90398 1.71963 1.34898 1.34820 1.21973 0.82367 0.96445 1.05507 1.47741 1.06544 1.73553 1.06733 1.21606 0.96897 0.96687 0.84996 1.21654 0.97513 0.96175 0.98861 1.21906 0.98018 0.99429 1.01100 1.21757 0.99523 1.01988 0.96816 1.21096 0.90262 0.74781 0.82313 1.90667 1.69560 1.48341 1.30893 1.20322 0.90792 1.02377 0.97503 1.19111 1.10708 0.92985 0.93953 1.20452 0.97927 0.95691 0.94671 1.20328 1.13028 0.96571 0.96082 1.20591 0.98570 0.93184 0.97554 1.20989 1.12095 0.96038 0.96142 1.17482 0.88731 0.92506 0.90587 1.19380 1.15184 0.92432 1.20172 0.89367 1.26126 0.99965 0.94040 0.93105 1.69705 1.35936 1.00177 1.37748 0.86370 0.80505 0.80169 0.79474 1.19813 1.22047 1.16708 0.88610 0.89937 0.89753 0.87340 0.86632 0.91157 0.89984 0.89607 0.92232 0.93197 0.92582 0.92358 0.92407 0.92974 0.88171 0.90411 0.89132 0.89047 0.89053 0.88368 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 10.25 36.01 0.37 -1.38 16 2 C 0.33 4.38 7.33 -29.04 -0.21 4.16 16 3 O -0.45 -7.71 17.17 6.00 0.10 -7.61 16 4 C 0.06 0.80 4.88 -5.20 -0.03 0.77 16 5 N -0.61 -9.61 1.79 -175.07 -0.31 -9.93 16 6 C 0.12 1.53 4.70 -4.05 -0.02 1.51 16 7 C -0.12 -1.48 3.12 -90.62 -0.28 -1.76 16 8 C -0.15 -1.60 8.18 37.16 0.30 -1.30 16 9 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 10 C 0.53 10.74 7.26 -10.99 -0.08 10.66 16 11 O -0.52 -12.82 15.61 5.56 0.09 -12.73 16 12 C -0.07 -1.42 3.74 -29.04 -0.11 -1.53 16 13 C -0.17 -3.96 4.43 -103.91 -0.46 -4.42 16 14 C -0.07 -1.57 9.66 -39.66 -0.38 -1.95 16 15 C -0.24 -5.40 10.05 -39.29 -0.39 -5.79 16 16 C -0.08 -1.87 10.02 -39.66 -0.40 -2.27 16 17 C -0.23 -5.94 7.17 -38.87 -0.28 -6.22 16 18 C 0.11 2.87 5.10 -106.82 -0.54 2.32 16 19 C -0.44 -11.94 8.56 -37.74 -0.32 -12.26 16 20 H 0.09 2.49 6.99 -52.49 -0.37 2.12 16 21 C 0.09 2.25 5.41 -17.34 -0.09 2.16 16 22 N -0.81 -21.57 13.93 55.55 0.77 -20.79 16 23 Si 0.91 21.06 24.52 -169.99 -4.17 16.90 16 24 H -0.27 -6.23 6.71 56.52 0.38 -5.85 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.24 -5.78 6.85 56.52 0.39 -5.40 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.11 1.02 5.98 -51.93 -0.31 0.71 16 31 H 0.12 1.64 7.42 -51.93 -0.39 1.26 16 32 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.08 1.03 6.44 -51.93 -0.33 0.69 16 34 H 0.09 1.31 7.30 -51.93 -0.38 0.93 16 35 H 0.06 0.70 5.89 -51.93 -0.31 0.39 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 1.98 6.27 -51.93 -0.33 1.66 16 42 H 0.08 1.35 7.31 -51.93 -0.38 0.97 16 43 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 45 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 46 H 0.10 2.49 4.74 -52.49 -0.25 2.24 16 47 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -33.24 376.76 -7.71 -40.95 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.28 Total: 5.91 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.59 Total: -18.38 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.46 Total: -30.72 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.19 Total: -20.34 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.17 Total: 16.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.24 -7.71 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817618401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.157 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds