Wall clock time and date at job start Tue Mar 31 2020 12:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20760 * 120.00474 * 2 1 4 4 C 1.50698 * 120.00292 * 179.97438 * 2 1 3 5 5 N 1.46496 * 109.47684 * 179.97438 * 4 2 1 6 6 C 1.46497 * 120.00381 * 269.99918 * 5 4 2 7 7 C 1.52992 * 109.47188 * 270.00069 * 6 5 4 8 8 C 1.52995 * 109.47364 * 65.00049 * 7 6 5 9 9 C 1.53009 * 109.47091 * 184.99749 * 7 6 5 10 10 C 1.34782 * 119.99890 * 89.99821 * 5 4 2 11 11 O 1.21282 * 119.99940 * 0.02562 * 10 5 4 12 12 C 1.50696 * 120.00157 * 179.97438 * 10 5 4 13 13 C 1.50696 * 109.47116 * 179.97438 * 12 10 5 14 14 C 1.37640 * 120.13080 * 265.00230 * 13 12 10 15 15 C 1.38613 * 120.24902 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.50186 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.24953 * 0.02769 * 16 15 14 18 18 C 1.40703 * 120.12602 * 84.73016 * 13 12 10 19 19 C 1.41399 * 120.24228 * 359.97438 * 18 13 12 20 20 H 1.07999 * 120.00139 * 329.69695 * 19 18 13 21 21 C 1.39949 * 119.99785 * 149.69527 * 19 18 13 22 22 N 1.30823 * 119.99667 * 162.01721 * 21 19 18 23 23 Si 1.86799 * 120.00057 * 342.02117 * 21 19 18 24 24 H 1.48502 * 109.47158 * 95.40081 * 23 21 19 25 25 H 1.48494 * 109.46787 * 215.39922 * 23 21 19 26 26 H 1.48500 * 109.47187 * 335.39960 * 23 21 19 27 27 H 1.08993 * 109.47107 * 270.00133 * 1 2 3 28 28 H 1.09004 * 109.46715 * 30.00262 * 1 2 3 29 29 H 1.08996 * 109.46781 * 150.00042 * 1 2 3 30 30 H 1.09003 * 109.47124 * 59.99795 * 4 2 1 31 31 H 1.09004 * 109.46954 * 300.00361 * 4 2 1 32 32 H 1.09002 * 109.46524 * 29.99988 * 6 5 4 33 33 H 1.08997 * 109.47221 * 149.99668 * 6 5 4 34 34 H 1.08997 * 109.47420 * 304.99298 * 7 6 5 35 35 H 1.09003 * 109.46816 * 299.99635 * 8 7 6 36 36 H 1.08995 * 109.47730 * 59.99732 * 8 7 6 37 37 H 1.09007 * 109.47448 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.46738 * 59.99954 * 9 7 6 39 39 H 1.08997 * 109.47020 * 180.02562 * 9 7 6 40 40 H 1.08997 * 109.46620 * 300.00039 * 9 7 6 41 41 H 1.09000 * 109.47252 * 300.00417 * 12 10 5 42 42 H 1.09004 * 109.46812 * 60.00676 * 12 10 5 43 43 H 1.07993 * 119.87403 * 0.02562 * 14 13 12 44 44 H 1.07999 * 119.74961 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.87668 * 180.02562 * 16 15 14 46 46 H 1.08001 * 120.12934 * 179.97438 * 17 16 15 47 47 H 0.96997 * 119.99798 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3050 0.0006 5 7 3.7009 -1.0374 -0.0002 6 6 4.4206 -0.9045 -1.2692 7 6 4.9347 -2.2763 -1.7101 8 6 3.7475 -3.1929 -2.0123 9 6 5.7912 -2.1198 -2.9683 10 6 4.3639 -0.9135 1.1668 11 8 3.7681 -1.0240 2.2174 12 6 5.8456 -0.6388 1.1661 13 6 6.3398 -0.5453 2.5866 14 6 6.4463 0.6814 3.2018 15 6 6.9001 0.7702 4.5085 16 6 7.2520 -0.3726 5.2105 17 6 7.1546 -1.6093 4.6152 18 6 6.6887 -1.7121 3.2912 19 6 6.5774 -2.9783 2.6716 20 1 5.8226 -3.1460 1.9176 21 6 7.4454 -4.0140 3.0355 22 7 7.1422 -5.2534 2.7463 23 14 9.0366 -3.6269 3.9340 24 1 8.8282 -3.7764 5.3967 25 1 10.0981 -4.5642 3.4869 26 1 9.4486 -2.2324 3.6326 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.9972 -1.8771 -0.8891 31 1 1.9972 -1.8763 0.8908 32 1 3.7473 -0.5074 -2.0288 33 1 5.2631 -0.2252 -1.1396 34 1 5.5366 -2.7123 -0.9128 35 1 3.1373 -3.3044 -1.1159 36 1 3.1456 -2.7570 -2.8096 37 1 4.1137 -4.1705 -2.3260 38 1 6.6371 -1.4668 -2.7530 39 1 6.1571 -3.0972 -3.2826 40 1 5.1893 -1.6838 -3.7655 41 1 6.3649 -1.4480 0.6528 42 1 6.0404 0.3022 0.6514 43 1 6.1745 1.5780 2.6646 44 1 6.9801 1.7368 4.9835 45 1 7.6040 -0.2917 6.2283 46 1 7.4297 -2.4981 5.1636 47 1 7.7439 -5.9712 2.9982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817618401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:46 Heat of formation + Delta-G solvation = -83.225099 kcal Electronic energy + Delta-G solvation = -27705.504757 eV Core-core repulsion = 24044.976126 eV Total energy + Delta-G solvation = -3660.528631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50049 -40.10971 -39.24718 -37.77240 -35.48684 -34.66041 -33.64018 -32.19370 -31.86359 -29.55434 -28.12153 -27.78516 -26.90789 -26.10142 -23.23610 -22.23258 -21.36948 -20.92074 -19.79323 -19.23689 -18.05724 -17.79262 -17.25105 -17.22643 -16.33192 -16.11030 -16.02592 -15.73658 -15.57460 -15.36465 -15.13812 -14.68790 -14.51634 -14.40791 -13.88577 -13.77906 -13.59789 -13.37291 -13.18332 -13.15069 -13.02479 -12.85482 -12.76687 -12.68155 -12.65427 -12.51254 -12.17455 -12.00722 -11.77067 -11.60291 -11.49938 -11.37173 -11.01619 -10.97226 -10.75789 -9.52604 -9.41549 -9.30187 -8.86095 -6.43847 0.78327 0.88635 0.98700 1.27026 1.39223 1.49012 1.75338 2.02907 2.14526 2.64026 3.19926 3.47743 3.81039 3.92037 3.97957 4.12650 4.14828 4.20327 4.28047 4.34994 4.43136 4.45900 4.49508 4.53687 4.65049 4.67225 4.68859 4.69998 4.82794 4.87775 4.91763 4.95182 5.02412 5.05020 5.14015 5.15203 5.32771 5.36879 5.38743 5.45824 5.63009 5.65826 5.85871 5.93715 6.04566 6.28887 6.37213 6.45834 6.55946 6.80607 6.90484 7.31006 8.21571 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.005044 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.154812 B = 5549.556905 C = 6769.252842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.337 3.663 3 O -0.495 6.495 4 C 0.052 3.948 5 N -0.604 5.604 6 C 0.118 3.882 7 C -0.119 4.119 8 C -0.146 4.146 9 C -0.138 4.138 10 C 0.522 3.478 11 O -0.576 6.576 12 C -0.069 4.069 13 C -0.174 4.174 14 C -0.082 4.082 15 C -0.230 4.230 16 C -0.090 4.090 17 C -0.255 4.255 18 C 0.085 3.915 19 C -0.465 4.465 20 H 0.057 0.943 21 C 0.052 3.948 22 N -0.848 5.848 23 Si 0.960 3.040 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.253 1.253 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.093 0.907 47 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 5.739 -12.748 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.214 3.786 3 O -0.371 6.371 4 C -0.071 4.071 5 N -0.336 5.336 6 C -0.005 4.005 7 C -0.139 4.139 8 C -0.203 4.203 9 C -0.196 4.196 10 C 0.312 3.688 11 O -0.454 6.454 12 C -0.108 4.108 13 C -0.175 4.175 14 C -0.101 4.101 15 C -0.249 4.249 16 C -0.108 4.108 17 C -0.275 4.275 18 C 0.083 3.917 19 C -0.494 4.494 20 H 0.075 0.925 21 C -0.163 4.163 22 N -0.475 5.475 23 Si 0.784 3.216 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.177 1.177 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.167 0.833 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.111 0.889 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.633 5.933 -12.251 15.606 hybrid contribution 0.541 -0.605 0.750 1.105 sum -7.091 5.327 -11.501 14.524 Atomic orbital electron populations 1.22265 0.90638 1.06594 1.05599 1.25798 0.94036 0.90060 0.68669 1.90388 1.73255 1.36130 1.37330 1.22315 0.80715 0.97370 1.06712 1.47725 1.07922 1.71532 1.06436 1.21855 0.97402 0.97105 0.84093 1.21573 0.97871 0.95834 0.98611 1.21905 0.97610 0.99281 1.01516 1.21721 0.99465 1.02199 0.96181 1.21059 0.90314 0.74509 0.82948 1.90626 1.70490 1.51336 1.32992 1.20311 0.91019 1.03547 0.95923 1.19561 1.09456 0.92956 0.95553 1.20852 0.97686 0.96155 0.95361 1.20829 1.10410 0.97892 0.95794 1.20969 0.98219 0.92489 0.99108 1.21144 1.13122 0.97096 0.96093 1.17710 0.89808 0.92866 0.91334 1.19272 1.15661 0.93800 1.20704 0.92475 1.26713 1.02063 0.93743 0.93733 1.69730 1.37287 1.00865 1.39591 0.85575 0.77759 0.79581 0.78686 1.19317 1.20317 1.17671 0.88220 0.89053 0.86289 0.83276 0.88185 0.88175 0.90024 0.93913 0.93527 0.90023 0.92895 0.92448 0.92518 0.90496 0.88722 0.87656 0.86546 0.85544 0.85898 0.88932 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 10.25 71.24 0.73 -2.10 16 2 C 0.34 8.38 7.33 29.10 0.21 8.59 16 3 O -0.50 -16.68 17.17 -1.45 -0.02 -16.70 16 4 C 0.05 1.31 4.88 85.63 0.42 1.73 16 5 N -0.60 -19.05 1.79 -826.18 -1.48 -20.53 16 6 C 0.12 2.83 4.70 86.38 0.41 3.23 16 7 C -0.12 -2.84 3.12 -10.79 -0.03 -2.88 16 8 C -0.15 -2.98 8.18 71.98 0.59 -2.39 16 9 C -0.14 -2.55 9.19 71.99 0.66 -1.89 16 10 C 0.52 22.03 7.26 87.65 0.64 22.67 16 11 O -0.58 -29.63 15.61 -3.04 -0.05 -29.67 16 12 C -0.07 -2.83 3.74 29.10 0.11 -2.73 16 13 C -0.17 -8.40 4.43 -19.40 -0.09 -8.49 16 14 C -0.08 -3.64 9.66 22.22 0.21 -3.42 16 15 C -0.23 -9.75 10.05 22.46 0.23 -9.52 16 16 C -0.09 -4.02 10.02 22.22 0.22 -3.80 16 17 C -0.26 -13.08 7.17 22.73 0.16 -12.91 16 18 C 0.09 4.59 5.10 -21.29 -0.11 4.48 16 19 C -0.46 -26.47 8.56 23.46 0.20 -26.27 16 20 H 0.06 3.50 6.99 -2.91 -0.02 3.48 16 21 C 0.05 2.83 5.41 85.26 0.46 3.29 16 22 N -0.85 -47.07 13.93 21.83 0.30 -46.76 16 23 Si 0.96 44.27 24.52 68.60 1.68 45.95 16 24 H -0.27 -12.00 6.71 99.48 0.67 -11.33 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.25 -11.91 6.85 99.48 0.68 -11.22 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.12 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.15 2.45 5.98 -2.39 -0.01 2.43 16 31 H 0.10 2.91 7.42 -2.39 -0.02 2.90 16 32 H 0.10 1.86 8.07 -2.39 -0.02 1.84 16 33 H 0.08 1.97 6.44 -2.39 -0.02 1.95 16 34 H 0.04 1.39 7.30 -2.39 -0.02 1.38 16 35 H 0.05 1.06 5.89 -2.39 -0.01 1.05 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 3.98 6.27 -2.39 -0.01 3.97 16 42 H 0.11 3.63 7.31 -2.39 -0.02 3.61 16 43 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 44 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 46 H 0.09 4.74 4.74 -2.91 -0.01 4.73 16 47 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 Total: -1.00 -76.63 376.76 6.36 -70.27 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.90 Total: 29.85 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 5.02 Total: -32.42 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -1.17 Total: -67.29 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.07 Total: -46.37 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.68 Total: 45.95 kcal Total: -76.63 6.36 -70.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817618401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.951 kcal (2) G-P(sol) polarization free energy of solvation -76.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds