Wall clock time and date at job start Tue Mar 31 2020 12:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46890 * 2 1 4 4 C 1.52997 * 109.47118 * 119.99506 * 2 1 3 5 5 H 1.09005 * 109.48446 * 300.00796 * 4 2 1 6 6 C 1.53089 * 109.48322 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.16532 * 182.39970 * 6 4 2 8 8 H 1.08997 * 109.54546 * 176.94172 * 7 6 4 9 9 C 1.50703 * 109.54244 * 297.11202 * 7 6 4 10 10 O 1.21283 * 120.00155 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99934 * 179.97438 * 9 7 6 12 12 C 1.39937 * 119.99610 * 174.90207 * 11 9 7 13 13 C 1.39287 * 119.95082 * 325.54996 * 12 11 9 14 14 C 1.38490 * 120.43054 * 179.76771 * 13 12 11 15 15 C 1.37675 * 120.31913 * 0.51390 * 14 13 12 16 16 C 1.40740 * 119.88884 * 359.74720 * 15 14 13 17 17 C 1.41411 * 120.21506 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99631 * 25.16256 * 17 16 15 19 19 C 1.39931 * 120.00025 * 205.16573 * 17 16 15 20 20 N 1.30822 * 120.00041 * 16.77668 * 19 17 16 21 21 Si 1.86802 * 119.99637 * 196.78247 * 19 17 16 22 22 H 1.48502 * 109.47070 * 59.99889 * 21 19 17 23 23 H 1.48504 * 109.47165 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47020 * 299.99772 * 21 19 17 25 25 C 1.38247 * 119.94654 * 145.83426 * 12 11 9 26 26 C 1.53177 * 109.03571 * 56.98171 * 7 6 4 27 27 C 1.53096 * 109.16275 * 303.01843 * 26 7 6 28 28 O 1.42900 * 109.49024 * 60.03200 * 4 2 1 29 29 H 1.09002 * 109.47131 * 60.00263 * 1 2 3 30 30 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47757 * 299.99865 * 1 2 3 32 32 H 1.08993 * 109.47757 * 240.00135 * 2 1 3 33 33 H 1.09001 * 109.47106 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47019 * 299.99806 * 3 2 1 35 35 H 1.09004 * 109.47245 * 59.99399 * 3 2 1 36 36 H 1.08993 * 109.52451 * 302.31066 * 6 4 2 37 37 H 1.09000 * 109.52034 * 62.49466 * 6 4 2 38 38 H 0.96993 * 120.00086 * 354.90151 * 11 9 7 39 39 H 1.08002 * 119.78673 * 0.02562 * 13 12 11 40 40 H 1.07996 * 119.83979 * 180.23990 * 14 13 12 41 41 H 1.08000 * 120.05860 * 179.72534 * 15 14 13 42 42 H 0.97005 * 120.00065 * 179.97438 * 20 19 17 43 43 H 1.08007 * 120.15593 * 359.94808 * 25 12 11 44 44 H 1.08993 * 109.51841 * 62.92633 * 26 7 6 45 45 H 1.09002 * 109.52079 * 183.11254 * 26 7 6 46 46 H 1.08993 * 109.47573 * 177.59082 * 27 26 7 47 47 H 1.08998 * 109.48131 * 297.62630 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -0.2074 2.1394 6 6 3.5709 -0.7218 1.2492 7 6 4.0734 -1.4971 2.4711 8 1 5.1620 -1.5480 2.4482 9 6 3.6279 -0.7982 3.7297 10 8 2.9724 0.2197 3.6586 11 7 3.9571 -1.3049 4.9345 12 6 3.6363 -0.6013 6.1008 13 6 3.6658 0.7912 6.1031 14 6 3.3455 1.4977 7.2504 15 6 3.0043 0.8301 8.4051 16 6 2.9754 -0.5769 8.4194 17 6 2.6265 -1.2696 9.6018 18 1 2.0092 -0.7894 10.3467 19 6 3.0809 -2.5771 9.8067 20 7 4.0738 -3.0438 9.0940 21 14 2.2697 -3.6562 11.0978 22 1 0.8310 -3.8236 10.7701 23 1 2.9303 -4.9861 11.1176 24 1 2.4025 -3.0171 12.4316 25 6 3.2962 -1.2896 7.2505 26 6 3.4915 -2.9136 2.4380 27 6 1.9636 -2.8283 2.3922 28 8 1.5645 -2.0687 1.2494 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.9349 -1.1996 0.3397 37 1 3.9356 0.3044 1.2937 38 1 4.4163 -2.1573 4.9930 39 1 3.9362 1.3237 5.2032 40 1 3.3678 2.5774 7.2405 41 1 2.7596 1.3852 9.2987 42 1 4.3890 -3.9500 9.2363 43 1 3.2767 -2.3695 7.2507 44 1 3.8539 -3.4356 1.5525 45 1 3.7994 -3.4549 3.3326 46 1 1.5454 -3.8325 2.3253 47 1 1.5994 -2.3421 3.2972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821951696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:39 Heat of formation + Delta-G solvation = -84.084235 kcal Electronic energy + Delta-G solvation = -27360.616470 eV Core-core repulsion = 23700.050583 eV Total energy + Delta-G solvation = -3660.565886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69422 -38.69755 -37.10052 -35.41367 -34.30000 -33.76753 -33.17389 -30.08018 -29.57079 -28.50260 -27.18176 -25.38991 -25.22615 -23.67791 -22.44015 -21.24885 -20.31688 -20.18160 -19.13953 -17.45254 -16.65268 -16.47932 -16.19247 -15.75738 -15.01228 -14.94589 -14.64316 -14.38099 -14.25902 -13.95688 -13.60215 -13.32788 -13.15198 -12.92719 -12.65935 -12.39042 -12.27696 -12.17987 -12.01095 -11.68449 -11.54180 -11.26940 -11.21475 -11.14018 -11.13528 -10.82922 -10.74617 -10.68038 -10.50736 -10.22847 -9.97586 -9.75573 -9.52206 -9.33519 -9.14658 -8.79949 -7.40791 -7.04193 -6.72106 -4.39920 2.53610 2.83915 3.03885 3.07468 3.17556 3.31770 3.63746 3.80547 3.90962 4.52229 4.61663 4.72519 4.75274 4.86410 4.99501 5.10396 5.17814 5.34622 5.37397 5.51853 5.61888 5.64458 5.65319 5.68605 5.72985 5.85061 5.88742 5.90627 5.95777 6.02578 6.11440 6.17397 6.25859 6.34201 6.41780 6.60773 6.68004 6.87344 7.02731 7.04651 7.22682 7.34671 7.59229 7.66318 7.90249 8.00120 8.12877 8.30193 8.53287 8.73022 8.86234 8.93353 10.16172 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003430 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.992686 B = 8160.449424 C = 8771.346828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.146 4.146 4 C 0.083 3.917 5 H 0.088 0.912 6 C -0.127 4.127 7 C -0.113 4.113 8 H 0.099 0.901 9 C 0.508 3.492 10 O -0.521 6.521 11 N -0.663 5.663 12 C 0.145 3.855 13 C -0.227 4.227 14 C -0.086 4.086 15 C -0.228 4.228 16 C 0.121 3.879 17 C -0.464 4.464 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.800 5.800 21 Si 0.907 3.093 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.182 4.182 26 C -0.147 4.147 27 C 0.059 3.941 28 O -0.381 6.381 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.401 0.599 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.279 0.721 43 H 0.122 0.878 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -1.320 -15.021 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.204 4.204 4 C 0.025 3.975 5 H 0.106 0.894 6 C -0.165 4.165 7 C -0.135 4.135 8 H 0.117 0.883 9 C 0.295 3.705 10 O -0.397 6.397 11 N -0.307 5.307 12 C 0.053 3.947 13 C -0.248 4.248 14 C -0.105 4.105 15 C -0.248 4.248 16 C 0.118 3.882 17 C -0.494 4.494 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.425 5.425 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.203 4.203 26 C -0.185 4.185 27 C -0.018 4.018 28 O -0.300 6.300 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.235 0.765 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.140 0.860 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.416 -0.874 -15.277 15.308 hybrid contribution 0.344 -0.995 0.968 1.430 sum -0.072 -1.868 -14.309 14.431 Atomic orbital electron populations 1.21758 0.94820 1.02192 1.01283 1.21041 0.96428 0.95694 0.97074 1.21850 1.01195 0.95260 1.02056 1.22457 0.92379 0.82931 0.99691 0.89390 1.22025 0.97190 1.01170 0.96084 1.21451 1.02063 0.96157 0.93794 0.88269 1.20529 0.79893 0.85390 0.84680 1.90651 1.37673 1.24655 1.86752 1.43541 1.58213 1.23880 1.05034 1.17612 1.00904 0.91133 0.85048 1.20274 1.14158 0.92014 0.98318 1.20414 0.99633 0.97245 0.93192 1.21039 1.12172 0.94594 0.97011 1.17354 0.88128 0.90701 0.92031 1.19512 1.28707 0.97596 1.03583 0.90411 1.25863 0.93237 0.98218 0.96634 1.69802 1.19266 1.16946 1.36535 0.86384 0.80496 0.78759 0.81174 1.18867 1.20392 1.19015 1.21067 1.08358 0.99716 0.91181 1.22195 0.97453 0.95220 1.03612 1.22535 0.93316 0.96482 0.89424 1.87839 1.74856 1.23866 1.43421 0.93121 0.92026 0.92723 0.91131 0.92381 0.92593 0.92022 0.90919 0.89934 0.76467 0.88186 0.89089 0.88890 0.90999 0.86032 0.90010 0.90316 0.88736 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.05 37.16 0.34 -1.29 16 2 C -0.08 -0.97 2.72 -90.62 -0.25 -1.22 16 3 C -0.15 -1.57 8.84 37.16 0.33 -1.24 16 4 C 0.08 1.13 1.93 -26.69 -0.05 1.08 16 5 H 0.09 1.49 5.80 -51.93 -0.30 1.19 16 6 C -0.13 -1.55 4.13 -26.59 -0.11 -1.66 16 7 C -0.11 -1.42 3.05 -91.59 -0.28 -1.70 16 8 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 9 C 0.51 8.69 5.55 -10.98 -0.06 8.63 16 10 O -0.52 -10.55 11.58 5.56 0.06 -10.49 16 11 N -0.66 -12.16 5.25 -9.91 -0.05 -12.22 16 12 C 0.14 3.33 6.25 -83.76 -0.52 2.81 16 13 C -0.23 -5.33 8.66 -39.10 -0.34 -5.67 16 14 C -0.09 -2.01 10.02 -39.69 -0.40 -2.40 16 15 C -0.23 -5.66 9.79 -38.84 -0.38 -6.04 16 16 C 0.12 3.19 5.57 -106.85 -0.60 2.60 16 17 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 18 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 19 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 20 N -0.80 -19.82 10.94 55.55 0.61 -19.21 16 21 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 C -0.18 -4.57 8.60 -38.68 -0.33 -4.90 16 26 C -0.15 -1.63 5.57 -26.59 -0.15 -1.78 16 27 C 0.06 0.77 6.62 37.21 0.25 1.02 16 28 O -0.38 -5.35 9.73 -35.23 -0.34 -5.69 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.04 6.46 -51.93 -0.34 0.71 16 38 H 0.40 6.28 8.09 -40.82 -0.33 5.95 16 39 H 0.10 2.31 6.48 -52.49 -0.34 1.97 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 43 H 0.12 3.09 6.17 -52.48 -0.32 2.76 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.80 7.41 -51.93 -0.38 0.42 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.81 7.38 -51.93 -0.38 0.43 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -28.89 366.51 -9.55 -38.44 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -7.33 Total: 12.82 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.98 Total: -22.47 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.56 Total: -31.43 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.28 Total: -16.18 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.89 -9.55 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821951696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.646 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds