Wall clock time and date at job start Tue Mar 31 2020 12:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46890 * 2 1 4 4 C 1.52997 * 109.47118 * 119.99506 * 2 1 3 5 5 H 1.09005 * 109.48446 * 300.00796 * 4 2 1 6 6 C 1.53089 * 109.48322 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.16532 * 182.39970 * 6 4 2 8 8 H 1.08997 * 109.54546 * 176.94172 * 7 6 4 9 9 C 1.50703 * 109.54244 * 297.11202 * 7 6 4 10 10 O 1.21283 * 120.00155 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99934 * 179.97438 * 9 7 6 12 12 C 1.39937 * 119.99610 * 174.90207 * 11 9 7 13 13 C 1.39287 * 119.95082 * 325.54996 * 12 11 9 14 14 C 1.38490 * 120.43054 * 179.76771 * 13 12 11 15 15 C 1.37675 * 120.31913 * 0.51390 * 14 13 12 16 16 C 1.40740 * 119.88884 * 359.74720 * 15 14 13 17 17 C 1.41411 * 120.21506 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99631 * 25.16256 * 17 16 15 19 19 C 1.39931 * 120.00025 * 205.16573 * 17 16 15 20 20 N 1.30822 * 120.00041 * 16.77668 * 19 17 16 21 21 Si 1.86802 * 119.99637 * 196.78247 * 19 17 16 22 22 H 1.48502 * 109.47070 * 59.99889 * 21 19 17 23 23 H 1.48504 * 109.47165 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47020 * 299.99772 * 21 19 17 25 25 C 1.38247 * 119.94654 * 145.83426 * 12 11 9 26 26 C 1.53177 * 109.03571 * 56.98171 * 7 6 4 27 27 C 1.53096 * 109.16275 * 303.01843 * 26 7 6 28 28 O 1.42900 * 109.49024 * 60.03200 * 4 2 1 29 29 H 1.09002 * 109.47131 * 60.00263 * 1 2 3 30 30 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47757 * 299.99865 * 1 2 3 32 32 H 1.08993 * 109.47757 * 240.00135 * 2 1 3 33 33 H 1.09001 * 109.47106 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47019 * 299.99806 * 3 2 1 35 35 H 1.09004 * 109.47245 * 59.99399 * 3 2 1 36 36 H 1.08993 * 109.52451 * 302.31066 * 6 4 2 37 37 H 1.09000 * 109.52034 * 62.49466 * 6 4 2 38 38 H 0.96993 * 120.00086 * 354.90151 * 11 9 7 39 39 H 1.08002 * 119.78673 * 0.02562 * 13 12 11 40 40 H 1.07996 * 119.83979 * 180.23990 * 14 13 12 41 41 H 1.08000 * 120.05860 * 179.72534 * 15 14 13 42 42 H 0.97005 * 120.00065 * 179.97438 * 20 19 17 43 43 H 1.08007 * 120.15593 * 359.94808 * 25 12 11 44 44 H 1.08993 * 109.51841 * 62.92633 * 26 7 6 45 45 H 1.09002 * 109.52079 * 183.11254 * 26 7 6 46 46 H 1.08993 * 109.47573 * 177.59082 * 27 26 7 47 47 H 1.08998 * 109.48131 * 297.62630 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -0.2074 2.1394 6 6 3.5709 -0.7218 1.2492 7 6 4.0734 -1.4971 2.4711 8 1 5.1620 -1.5480 2.4482 9 6 3.6279 -0.7982 3.7297 10 8 2.9724 0.2197 3.6586 11 7 3.9571 -1.3049 4.9345 12 6 3.6363 -0.6013 6.1008 13 6 3.6658 0.7912 6.1031 14 6 3.3455 1.4977 7.2504 15 6 3.0043 0.8301 8.4051 16 6 2.9754 -0.5769 8.4194 17 6 2.6265 -1.2696 9.6018 18 1 2.0092 -0.7894 10.3467 19 6 3.0809 -2.5771 9.8067 20 7 4.0738 -3.0438 9.0940 21 14 2.2697 -3.6562 11.0978 22 1 0.8310 -3.8236 10.7701 23 1 2.9303 -4.9861 11.1176 24 1 2.4025 -3.0171 12.4316 25 6 3.2962 -1.2896 7.2505 26 6 3.4915 -2.9136 2.4380 27 6 1.9636 -2.8283 2.3922 28 8 1.5645 -2.0687 1.2494 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.9349 -1.1996 0.3397 37 1 3.9356 0.3044 1.2937 38 1 4.4163 -2.1573 4.9930 39 1 3.9362 1.3237 5.2032 40 1 3.3678 2.5774 7.2405 41 1 2.7596 1.3852 9.2987 42 1 4.3890 -3.9500 9.2363 43 1 3.2767 -2.3695 7.2507 44 1 3.8539 -3.4356 1.5525 45 1 3.7994 -3.4549 3.3326 46 1 1.5454 -3.8325 2.3253 47 1 1.5994 -2.3421 3.2972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821951696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:38 Heat of formation + Delta-G solvation = -99.518273 kcal Electronic energy + Delta-G solvation = -27361.285740 eV Core-core repulsion = 23700.050583 eV Total energy + Delta-G solvation = -3661.235156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95598 -40.08845 -38.76307 -36.39632 -35.97192 -35.18534 -34.63004 -31.47737 -31.07147 -30.21544 -28.10600 -27.19971 -26.45016 -24.67730 -23.76833 -23.09532 -21.92237 -21.15431 -20.54810 -19.25323 -18.06964 -17.51624 -17.41582 -17.24108 -16.67888 -16.53758 -16.12000 -15.60772 -15.44170 -15.08938 -14.88917 -14.65831 -14.58071 -14.23334 -14.18612 -13.66586 -13.51334 -13.36370 -13.26922 -13.05053 -12.91983 -12.83562 -12.60636 -12.45636 -12.32767 -12.16896 -12.04820 -11.86237 -11.76019 -11.59339 -11.48829 -11.22094 -11.16184 -10.94271 -10.56933 -10.17525 -9.34413 -8.86304 -8.55395 -6.36795 0.81453 1.03429 1.39413 1.48654 1.52251 1.76666 2.21485 2.24298 2.74651 2.79733 3.50193 3.65710 3.70447 3.77926 3.89502 4.00511 4.14669 4.19550 4.38071 4.39629 4.46097 4.53377 4.67757 4.70730 4.75415 4.76409 4.82509 4.83458 4.88613 4.97426 4.99705 5.02103 5.08903 5.10058 5.14145 5.16983 5.23152 5.25786 5.35289 5.43166 5.47333 5.78492 5.84931 6.01717 6.07291 6.29968 6.32957 6.56377 6.74259 6.92745 6.96917 7.29261 8.33237 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.003430 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.992686 B = 8160.449424 C = 8771.346828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.143 4.143 4 C 0.081 3.919 5 H 0.047 0.953 6 C -0.124 4.124 7 C -0.106 4.106 8 H 0.131 0.869 9 C 0.506 3.494 10 O -0.555 6.555 11 N -0.661 5.661 12 C 0.152 3.848 13 C -0.240 4.240 14 C -0.085 4.085 15 C -0.251 4.251 16 C 0.093 3.907 17 C -0.501 4.501 18 H 0.074 0.926 19 C 0.040 3.960 20 N -0.820 5.820 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.262 1.262 25 C -0.203 4.203 26 C -0.140 4.140 27 C 0.054 3.946 28 O -0.387 6.387 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.289 0.711 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.115 0.885 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -2.826 -16.721 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.200 4.200 4 C 0.023 3.977 5 H 0.065 0.935 6 C -0.161 4.161 7 C -0.127 4.127 8 H 0.148 0.852 9 C 0.295 3.705 10 O -0.433 6.433 11 N -0.306 5.306 12 C 0.059 3.941 13 C -0.261 4.261 14 C -0.104 4.104 15 C -0.271 4.271 16 C 0.090 3.910 17 C -0.530 4.530 18 H 0.093 0.907 19 C -0.175 4.175 20 N -0.445 5.445 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.188 1.188 24 H -0.186 1.186 25 C -0.224 4.224 26 C -0.178 4.178 27 C -0.023 4.023 28 O -0.306 6.306 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.251 0.749 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.133 0.867 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.529 -2.387 -17.005 17.180 hybrid contribution 0.039 -0.482 1.437 1.516 sum 0.568 -2.869 -15.568 15.840 Atomic orbital electron populations 1.21744 0.95018 1.01721 1.01406 1.21078 0.96331 0.96048 0.96613 1.21826 1.01585 0.94676 1.01892 1.22412 0.93630 0.82616 0.98996 0.93538 1.22040 0.95849 1.01256 0.97005 1.21544 1.03832 0.96435 0.90844 0.85174 1.21465 0.78673 0.84962 0.85407 1.90647 1.38931 1.26432 1.87243 1.43544 1.58462 1.24289 1.04271 1.17674 0.99012 0.91327 0.86075 1.20455 1.14678 0.92462 0.98491 1.20720 0.98359 0.98706 0.92604 1.21202 1.13482 0.94430 0.97968 1.17757 0.88684 0.91710 0.92841 1.19768 1.30023 0.99239 1.03986 0.90742 1.26662 0.93326 0.98756 0.98780 1.69832 1.19600 1.17693 1.37416 0.85291 0.79210 0.77180 0.78262 1.18870 1.18819 1.18594 1.21020 1.10211 0.99342 0.91866 1.22214 0.95560 0.94398 1.05587 1.22645 0.95111 0.96825 0.87709 1.87833 1.75408 1.23920 1.43469 0.91059 0.92771 0.94519 0.89420 0.91719 0.90609 0.94279 0.87978 0.90469 0.74922 0.87898 0.86464 0.88261 0.90001 0.86822 0.86943 0.89308 0.86719 0.96596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.05 71.98 0.65 -2.50 16 2 C -0.08 -1.80 2.72 -10.79 -0.03 -1.83 16 3 C -0.14 -2.89 8.84 71.98 0.64 -2.26 16 4 C 0.08 2.17 1.93 30.62 0.06 2.22 16 5 H 0.05 1.65 5.80 -2.38 -0.01 1.64 16 6 C -0.12 -2.75 4.13 30.68 0.13 -2.63 16 7 C -0.11 -2.40 3.05 -11.42 -0.03 -2.44 16 8 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 9 C 0.51 17.13 5.55 87.66 0.49 17.61 16 10 O -0.55 -22.98 11.58 -3.04 -0.04 -23.01 16 11 N -0.66 -24.23 5.25 -303.64 -1.60 -25.82 16 12 C 0.15 7.16 6.25 38.10 0.24 7.40 16 13 C -0.24 -11.49 8.66 22.58 0.20 -11.30 16 14 C -0.09 -4.04 10.02 22.20 0.22 -3.82 16 15 C -0.25 -12.85 9.79 22.75 0.22 -12.62 16 16 C 0.09 5.09 5.57 -21.31 -0.12 4.97 16 17 C -0.50 -27.02 9.05 23.46 0.21 -26.80 16 18 H 0.07 3.90 7.90 -2.91 -0.02 3.88 16 19 C 0.04 1.98 5.16 85.25 0.44 2.42 16 20 N -0.82 -40.89 10.94 21.82 0.24 -40.65 16 21 Si 0.98 37.43 29.59 68.60 2.03 39.46 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 C -0.20 -10.52 8.60 22.85 0.20 -10.32 16 26 C -0.14 -2.71 5.57 30.69 0.17 -2.53 16 27 C 0.05 1.34 6.62 72.01 0.48 1.82 16 28 O -0.39 -10.47 9.73 -148.98 -1.45 -11.92 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.27 7.68 -2.39 -0.02 1.25 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.21 6.49 -2.39 -0.02 1.20 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 0.95 8.14 -2.38 -0.02 0.94 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.82 6.46 -2.39 -0.02 1.80 16 38 H 0.41 12.70 8.09 -92.71 -0.75 11.95 16 39 H 0.10 4.83 6.48 -2.91 -0.02 4.81 16 40 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 42 H 0.29 12.93 8.30 -92.70 -0.77 12.16 16 43 H 0.11 5.96 6.17 -2.91 -0.02 5.94 16 44 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.57 7.41 -2.39 -0.02 1.55 16 46 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.02 0.50 7.38 -2.39 -0.02 0.49 16 Total: -1.00 -65.23 366.51 3.56 -61.66 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: 0.22 Total: 42.88 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 4.15 Total: -42.61 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -1.36 Total: -66.47 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.49 Total: -34.93 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -65.23 3.56 -61.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821951696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.854 kcal (2) G-P(sol) polarization free energy of solvation -65.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds