Wall clock time and date at job start Tue Mar 31 2020 12:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 C 1.53002 * 109.46931 * 119.99904 * 2 1 3 5 5 H 1.09004 * 109.47570 * 299.97400 * 4 2 1 6 6 C 1.53102 * 109.48014 * 180.02562 * 4 2 1 7 7 C 1.53183 * 109.15727 * 182.49532 * 6 4 2 8 8 H 1.08996 * 109.54008 * 296.93714 * 7 6 4 9 9 C 1.50699 * 109.54330 * 176.75683 * 7 6 4 10 10 O 1.21283 * 120.00375 * 0.17836 * 9 7 6 11 11 N 1.34778 * 119.99604 * 180.17666 * 9 7 6 12 12 C 1.39941 * 119.99942 * 186.08615 * 11 9 7 13 13 C 1.39290 * 119.94836 * 207.09047 * 12 11 9 14 14 C 1.38480 * 120.42703 * 179.97438 * 13 12 11 15 15 C 1.37684 * 120.32408 * 359.79202 * 14 13 12 16 16 C 1.40745 * 119.88306 * 0.46306 * 15 14 13 17 17 C 1.41409 * 120.21114 * 179.79396 * 16 15 14 18 18 H 1.07996 * 119.99933 * 193.22347 * 17 16 15 19 19 C 1.39932 * 119.99885 * 13.22140 * 17 16 15 20 20 N 1.30830 * 119.99875 * 206.84940 * 19 17 16 21 21 Si 1.86803 * 120.00257 * 26.84885 * 19 17 16 22 22 H 1.48500 * 109.46947 * 262.45534 * 21 19 17 23 23 H 1.48502 * 109.47064 * 22.45103 * 21 19 17 24 24 H 1.48497 * 109.47231 * 142.45403 * 21 19 17 25 25 C 1.38243 * 119.94243 * 27.07041 * 12 11 9 26 26 C 1.53180 * 109.10616 * 56.84305 * 7 6 4 27 27 C 1.53087 * 109.16681 * 303.06412 * 26 7 6 28 28 O 1.42897 * 109.48311 * 59.99974 * 4 2 1 29 29 H 1.09001 * 109.47628 * 300.00394 * 1 2 3 30 30 H 1.09005 * 109.47235 * 60.00231 * 1 2 3 31 31 H 1.09002 * 109.46851 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47628 * 239.99606 * 2 1 3 33 33 H 1.08994 * 109.46979 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46825 * 300.00020 * 3 2 1 35 35 H 1.09001 * 109.47139 * 59.99306 * 3 2 1 36 36 H 1.09000 * 109.60202 * 62.54682 * 6 4 2 37 37 H 1.09003 * 109.45456 * 302.35320 * 6 4 2 38 38 H 0.97006 * 120.00221 * 6.08952 * 11 9 7 39 39 H 1.08001 * 119.78465 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.84086 * 180.02562 * 14 13 12 41 41 H 1.08001 * 120.06206 * 180.23689 * 15 14 13 42 42 H 0.96998 * 120.00002 * 354.82000 * 20 19 17 43 43 H 1.07997 * 120.16599 * 0.04569 * 25 12 11 44 44 H 1.08996 * 109.52113 * 62.97456 * 26 7 6 45 45 H 1.09003 * 109.52064 * 183.15603 * 26 7 6 46 46 H 1.09002 * 109.47976 * 177.59006 * 27 26 7 47 47 H 1.08997 * 109.48150 * 297.61856 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6770 -0.2072 2.1393 6 6 3.5709 -0.7208 1.2499 7 6 4.0734 -1.4982 2.4704 8 1 3.7530 -0.9931 3.3816 9 6 5.5782 -1.5714 2.4370 10 8 6.1908 -1.0506 1.5290 11 7 6.2434 -2.2157 3.4163 12 6 7.6417 -2.1760 3.4556 13 6 8.3506 -3.2189 4.0472 14 6 9.7344 -3.1900 4.0911 15 6 10.4253 -2.1310 3.5462 16 6 9.7222 -1.0675 2.9499 17 6 10.4246 0.0257 2.3920 18 1 9.8959 0.9303 2.1303 19 6 11.8047 -0.0647 2.1790 20 7 12.5386 1.0184 2.1772 21 14 12.5991 -1.7317 1.8973 22 1 13.1759 -2.2270 3.1729 23 1 11.5759 -2.6918 1.4110 24 1 13.6770 -1.6015 0.8842 25 6 8.3172 -1.1018 2.9069 26 6 3.4905 -2.9144 2.4376 27 6 1.9627 -2.8282 2.3923 28 8 1.5637 -2.0685 1.2496 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9363 0.3051 1.2958 37 1 3.9345 -1.1975 0.3395 38 1 5.7529 -2.7070 4.0938 39 1 7.8176 -4.0554 4.4743 40 1 10.2745 -4.0039 4.5517 41 1 11.5046 -2.1147 3.5794 42 1 12.1178 1.8895 2.2482 43 1 7.7684 -0.2925 2.4483 44 1 3.8523 -3.4368 1.5520 45 1 3.7985 -3.4559 3.3321 46 1 1.5438 -3.8323 2.3256 47 1 1.5991 -2.3419 3.2975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821951697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:43 Heat of formation + Delta-G solvation = -85.004202 kcal Electronic energy + Delta-G solvation = -26652.164437 eV Core-core repulsion = 22991.558658 eV Total energy + Delta-G solvation = -3660.605779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56892 -39.19811 -37.37926 -35.62728 -34.59991 -33.88740 -33.21295 -30.31554 -30.13154 -28.78480 -27.38693 -25.74788 -24.88321 -23.88706 -22.33017 -20.91210 -20.75911 -20.38859 -19.44223 -18.32585 -17.08599 -16.63768 -16.14621 -16.06558 -15.53844 -15.11698 -14.70463 -14.53942 -14.14653 -13.91025 -13.86314 -13.67445 -13.54660 -13.09090 -12.82492 -12.61073 -12.38158 -12.27850 -12.00305 -11.90691 -11.57608 -11.53370 -11.41974 -11.28211 -11.19607 -11.01400 -10.76032 -10.70485 -10.41823 -10.37187 -9.96503 -9.86597 -9.61718 -9.35637 -8.91316 -8.89425 -7.78617 -7.38495 -7.07462 -4.52364 2.39947 2.73316 3.12257 3.22109 3.40031 3.42866 3.53439 3.58882 4.00390 4.36538 4.49488 4.56098 4.59402 4.65538 4.79134 4.83762 5.03979 5.06999 5.15219 5.26652 5.36852 5.39869 5.43937 5.45957 5.51378 5.63504 5.65866 5.74571 5.77562 5.92336 5.93573 6.01436 6.08091 6.13491 6.22034 6.24955 6.40073 6.66541 6.81973 6.88591 7.03704 7.31527 7.48766 7.53854 7.65624 7.78876 7.94964 8.09898 8.41892 8.51068 8.67517 8.78961 9.91677 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.003009 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.862843 B = 9304.713303 C =10370.157519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.151 4.151 4 C 0.096 3.904 5 H 0.057 0.943 6 C -0.131 4.131 7 C -0.108 4.108 8 H 0.096 0.904 9 C 0.508 3.492 10 O -0.509 6.509 11 N -0.668 5.668 12 C 0.171 3.829 13 C -0.285 4.285 14 C -0.053 4.053 15 C -0.269 4.269 16 C 0.109 3.891 17 C -0.501 4.501 18 H 0.076 0.924 19 C 0.043 3.957 20 N -0.801 5.801 21 Si 1.083 2.917 22 H -0.278 1.278 23 H -0.260 1.260 24 H -0.295 1.295 25 C -0.221 4.221 26 C -0.149 4.149 27 C 0.066 3.934 28 O -0.377 6.377 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.399 0.601 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.288 0.712 43 H 0.116 0.884 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.934 -4.632 0.804 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.208 4.208 4 C 0.039 3.961 5 H 0.075 0.925 6 C -0.169 4.169 7 C -0.129 4.129 8 H 0.114 0.886 9 C 0.294 3.706 10 O -0.383 6.383 11 N -0.311 5.311 12 C 0.079 3.921 13 C -0.307 4.307 14 C -0.072 4.072 15 C -0.289 4.289 16 C 0.105 3.895 17 C -0.529 4.529 18 H 0.094 0.906 19 C -0.179 4.179 20 N -0.422 5.422 21 Si 0.911 3.089 22 H -0.206 1.206 23 H -0.185 1.185 24 H -0.223 1.223 25 C -0.242 4.242 26 C -0.187 4.187 27 C -0.011 4.011 28 O -0.296 6.296 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.180 -4.897 -0.252 19.797 hybrid contribution -1.444 0.738 1.039 1.926 sum -20.624 -4.159 0.786 21.054 Atomic orbital electron populations 1.21767 0.94678 1.02260 1.01298 1.21083 0.96327 0.95809 0.97391 1.21901 1.01949 0.94941 1.02036 1.22189 0.92667 0.82998 0.98271 0.92474 1.22109 0.95022 1.01746 0.98017 1.21396 0.92340 0.98017 1.01194 0.88612 1.20517 0.89385 0.78865 0.81827 1.90750 1.69135 1.44466 1.33956 1.43524 1.06322 1.52306 1.28947 1.17535 0.80052 0.95160 0.99403 1.19901 0.93909 0.99950 1.16891 1.20286 0.93218 0.96517 0.97176 1.20863 0.97783 0.98916 1.11289 1.17565 0.91418 0.91260 0.89283 1.20691 0.94797 1.00806 1.36566 0.90582 1.27434 0.94639 1.05674 0.90113 1.70567 1.39832 1.00678 1.31085 0.83471 0.75535 0.73207 0.76687 1.20589 1.18464 1.22298 1.20954 0.93900 0.99119 1.10255 1.22223 0.96999 0.95604 1.03858 1.22525 0.93185 0.96557 0.88846 1.87914 1.74450 1.23501 1.43731 0.93025 0.92829 0.91900 0.90306 0.91693 0.92110 0.92571 0.89745 0.89990 0.76732 0.88914 0.88545 0.88561 0.90048 0.86624 0.90193 0.90369 0.88555 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.05 37.16 0.34 -0.83 16 2 C -0.09 -0.82 2.72 -90.62 -0.25 -1.06 16 3 C -0.15 -1.31 8.84 37.16 0.33 -0.98 16 4 C 0.10 0.97 2.22 -26.68 -0.06 0.91 16 5 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 6 C -0.13 -1.58 3.59 -26.58 -0.10 -1.68 16 7 C -0.11 -1.28 2.62 -91.58 -0.24 -1.52 16 8 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 9 C 0.51 8.65 6.93 -10.99 -0.08 8.58 16 10 O -0.51 -11.12 13.28 5.56 0.07 -11.04 16 11 N -0.67 -11.32 5.29 -9.91 -0.05 -11.37 16 12 C 0.17 3.75 6.38 -83.76 -0.53 3.21 16 13 C -0.29 -5.99 9.95 -39.10 -0.39 -6.38 16 14 C -0.05 -1.18 10.02 -39.69 -0.40 -1.58 16 15 C -0.27 -6.77 7.39 -38.84 -0.29 -7.06 16 16 C 0.11 2.94 5.42 -106.85 -0.58 2.36 16 17 C -0.50 -14.15 9.42 -37.74 -0.36 -14.50 16 18 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 19 C 0.04 1.16 5.39 -17.34 -0.09 1.07 16 20 N -0.80 -21.82 13.65 55.55 0.76 -21.06 16 21 Si 1.08 25.21 24.79 -169.99 -4.21 21.00 16 22 H -0.28 -6.12 6.66 56.52 0.38 -5.74 16 23 H -0.26 -6.09 6.75 56.52 0.38 -5.71 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.22 -5.66 8.43 -38.68 -0.33 -5.98 16 26 C -0.15 -1.44 5.29 -26.59 -0.14 -1.58 16 27 C 0.07 0.55 6.84 37.20 0.25 0.81 16 28 O -0.38 -4.02 9.73 -35.23 -0.34 -4.36 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.63 6.49 -51.93 -0.34 0.29 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.07 6.58 -51.93 -0.34 0.73 16 37 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 38 H 0.40 5.09 8.13 -40.82 -0.33 4.76 16 39 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.10 2.37 3.25 -52.49 -0.17 2.20 16 42 H 0.29 7.62 8.73 -40.82 -0.36 7.27 16 43 H 0.12 3.09 5.96 -52.49 -0.31 2.77 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.61 7.55 -51.93 -0.39 0.22 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -31.38 365.76 -8.56 -39.94 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.40 Total: 7.60 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -2.90 Total: -26.21 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.71 Total: -32.43 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.27 Total: -15.40 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.21 Total: 21.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.38 -8.56 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821951697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.061 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds