Wall clock time and date at job start Tue Mar 31 2020 12:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 C 1.53002 * 109.46931 * 119.99904 * 2 1 3 5 5 H 1.09004 * 109.47570 * 299.97400 * 4 2 1 6 6 C 1.53102 * 109.48014 * 180.02562 * 4 2 1 7 7 C 1.53183 * 109.15727 * 182.49532 * 6 4 2 8 8 H 1.08996 * 109.54008 * 296.93714 * 7 6 4 9 9 C 1.50699 * 109.54330 * 176.75683 * 7 6 4 10 10 O 1.21283 * 120.00375 * 0.17836 * 9 7 6 11 11 N 1.34778 * 119.99604 * 180.17666 * 9 7 6 12 12 C 1.39941 * 119.99942 * 186.08615 * 11 9 7 13 13 C 1.39290 * 119.94836 * 207.09047 * 12 11 9 14 14 C 1.38480 * 120.42703 * 179.97438 * 13 12 11 15 15 C 1.37684 * 120.32408 * 359.79202 * 14 13 12 16 16 C 1.40745 * 119.88306 * 0.46306 * 15 14 13 17 17 C 1.41409 * 120.21114 * 179.79396 * 16 15 14 18 18 H 1.07996 * 119.99933 * 193.22347 * 17 16 15 19 19 C 1.39932 * 119.99885 * 13.22140 * 17 16 15 20 20 N 1.30830 * 119.99875 * 206.84940 * 19 17 16 21 21 Si 1.86803 * 120.00257 * 26.84885 * 19 17 16 22 22 H 1.48500 * 109.46947 * 262.45534 * 21 19 17 23 23 H 1.48502 * 109.47064 * 22.45103 * 21 19 17 24 24 H 1.48497 * 109.47231 * 142.45403 * 21 19 17 25 25 C 1.38243 * 119.94243 * 27.07041 * 12 11 9 26 26 C 1.53180 * 109.10616 * 56.84305 * 7 6 4 27 27 C 1.53087 * 109.16681 * 303.06412 * 26 7 6 28 28 O 1.42897 * 109.48311 * 59.99974 * 4 2 1 29 29 H 1.09001 * 109.47628 * 300.00394 * 1 2 3 30 30 H 1.09005 * 109.47235 * 60.00231 * 1 2 3 31 31 H 1.09002 * 109.46851 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47628 * 239.99606 * 2 1 3 33 33 H 1.08994 * 109.46979 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46825 * 300.00020 * 3 2 1 35 35 H 1.09001 * 109.47139 * 59.99306 * 3 2 1 36 36 H 1.09000 * 109.60202 * 62.54682 * 6 4 2 37 37 H 1.09003 * 109.45456 * 302.35320 * 6 4 2 38 38 H 0.97006 * 120.00221 * 6.08952 * 11 9 7 39 39 H 1.08001 * 119.78465 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.84086 * 180.02562 * 14 13 12 41 41 H 1.08001 * 120.06206 * 180.23689 * 15 14 13 42 42 H 0.96998 * 120.00002 * 354.82000 * 20 19 17 43 43 H 1.07997 * 120.16599 * 0.04569 * 25 12 11 44 44 H 1.08996 * 109.52113 * 62.97456 * 26 7 6 45 45 H 1.09003 * 109.52064 * 183.15603 * 26 7 6 46 46 H 1.09002 * 109.47976 * 177.59006 * 27 26 7 47 47 H 1.08997 * 109.48150 * 297.61856 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6770 -0.2072 2.1393 6 6 3.5709 -0.7208 1.2499 7 6 4.0734 -1.4982 2.4704 8 1 3.7530 -0.9931 3.3816 9 6 5.5782 -1.5714 2.4370 10 8 6.1908 -1.0506 1.5290 11 7 6.2434 -2.2157 3.4163 12 6 7.6417 -2.1760 3.4556 13 6 8.3506 -3.2189 4.0472 14 6 9.7344 -3.1900 4.0911 15 6 10.4253 -2.1310 3.5462 16 6 9.7222 -1.0675 2.9499 17 6 10.4246 0.0257 2.3920 18 1 9.8959 0.9303 2.1303 19 6 11.8047 -0.0647 2.1790 20 7 12.5386 1.0184 2.1772 21 14 12.5991 -1.7317 1.8973 22 1 13.1759 -2.2270 3.1729 23 1 11.5759 -2.6918 1.4110 24 1 13.6770 -1.6015 0.8842 25 6 8.3172 -1.1018 2.9069 26 6 3.4905 -2.9144 2.4376 27 6 1.9627 -2.8282 2.3923 28 8 1.5637 -2.0685 1.2496 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1299 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9363 0.3051 1.2958 37 1 3.9345 -1.1975 0.3395 38 1 5.7529 -2.7070 4.0938 39 1 7.8176 -4.0554 4.4743 40 1 10.2745 -4.0039 4.5517 41 1 11.5046 -2.1147 3.5794 42 1 12.1178 1.8895 2.2482 43 1 7.7684 -0.2925 2.4483 44 1 3.8523 -3.4368 1.5520 45 1 3.7985 -3.4559 3.3321 46 1 1.5438 -3.8323 2.3256 47 1 1.5991 -2.3419 3.2975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821951697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:42 Heat of formation + Delta-G solvation = -104.948830 kcal Electronic energy + Delta-G solvation = -26653.029301 eV Core-core repulsion = 22991.558658 eV Total energy + Delta-G solvation = -3661.470643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80763 -40.36159 -39.09578 -36.44041 -36.29916 -35.22144 -34.71245 -32.05599 -31.09522 -30.46990 -28.12069 -26.98683 -26.62591 -24.74329 -23.73313 -22.63520 -22.17977 -21.18631 -20.74878 -20.23094 -18.37597 -17.75280 -17.54865 -17.35590 -16.96106 -16.25834 -15.99492 -15.60015 -15.54652 -15.29907 -15.25454 -14.71534 -14.67925 -14.37262 -14.17553 -14.05240 -13.78260 -13.47407 -13.39927 -13.04916 -13.01602 -12.77933 -12.56598 -12.44057 -12.25198 -12.19130 -12.02078 -11.84342 -11.76209 -11.50072 -11.39994 -11.28230 -11.18670 -10.76604 -10.74811 -10.35065 -9.74149 -9.44930 -8.84374 -6.62649 0.65909 0.84188 1.30800 1.54242 1.65223 1.76665 2.08565 2.12909 2.55810 2.79650 3.44727 3.51719 3.54331 3.71202 3.86413 4.01305 4.06359 4.22813 4.26751 4.32781 4.37625 4.45608 4.52033 4.57997 4.58913 4.67729 4.75424 4.76276 4.80692 4.94656 4.97535 4.99891 5.00071 5.03527 5.05557 5.10340 5.19656 5.25105 5.34007 5.39354 5.46852 5.55883 5.70112 5.78048 5.84456 6.05776 6.31009 6.38813 6.55199 6.62235 6.79684 7.22920 7.83151 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.003009 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.862843 B = 9304.713303 C =10370.157519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.149 4.149 4 C 0.104 3.896 5 H 0.075 0.925 6 C -0.130 4.130 7 C -0.097 4.097 8 H 0.127 0.873 9 C 0.503 3.497 10 O -0.564 6.564 11 N -0.654 5.654 12 C 0.176 3.824 13 C -0.259 4.259 14 C -0.054 4.054 15 C -0.285 4.285 16 C 0.086 3.914 17 C -0.547 4.547 18 H 0.035 0.965 19 C 0.011 3.989 20 N -0.824 5.824 21 Si 1.118 2.882 22 H -0.250 1.250 23 H -0.265 1.265 24 H -0.282 1.282 25 C -0.253 4.253 26 C -0.144 4.144 27 C 0.063 3.937 28 O -0.392 6.392 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.424 0.576 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.279 0.721 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.356 -8.306 3.289 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.206 4.206 4 C 0.047 3.953 5 H 0.093 0.907 6 C -0.168 4.168 7 C -0.118 4.118 8 H 0.144 0.856 9 C 0.292 3.708 10 O -0.442 6.442 11 N -0.300 5.300 12 C 0.082 3.918 13 C -0.280 4.280 14 C -0.072 4.072 15 C -0.304 4.304 16 C 0.083 3.917 17 C -0.576 4.576 18 H 0.054 0.946 19 C -0.204 4.204 20 N -0.446 5.446 21 Si 0.939 3.061 22 H -0.176 1.176 23 H -0.190 1.190 24 H -0.209 1.209 25 C -0.274 4.274 26 C -0.182 4.182 27 C -0.013 4.013 28 O -0.311 6.311 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.263 0.737 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.651 -8.580 2.275 23.400 hybrid contribution -0.935 1.771 0.320 2.028 sum -22.586 -6.809 2.595 23.732 Atomic orbital electron populations 1.21709 0.93297 1.02164 1.02195 1.21101 0.97407 0.95750 0.96608 1.21879 1.00713 0.94988 1.03032 1.22136 0.90597 0.83387 0.99210 0.90676 1.22075 0.96977 1.00689 0.97053 1.21439 0.87960 1.00223 1.02167 0.85554 1.21558 0.91535 0.77065 0.80630 1.90749 1.70784 1.46448 1.36211 1.43428 1.04464 1.52454 1.29632 1.17664 0.82520 0.93946 0.97654 1.20524 0.93876 0.99910 1.13690 1.20840 0.94058 0.96483 0.95829 1.21078 0.98363 0.99272 1.11670 1.17778 0.92279 0.91855 0.89793 1.20631 0.95886 1.00633 1.40454 0.94643 1.28579 0.94630 1.08147 0.89073 1.70630 1.39641 1.00604 1.33736 0.83074 0.75129 0.69790 0.78140 1.17582 1.18962 1.20910 1.20913 0.93819 1.00416 1.12283 1.22258 0.98043 0.93545 1.04321 1.22750 0.91924 0.97640 0.89009 1.87911 1.74400 1.23633 1.45171 0.92022 0.92065 0.92426 0.91913 0.93601 0.91264 0.91441 0.91158 0.92961 0.73689 0.83800 0.83995 0.88182 0.91080 0.89435 0.92240 0.87470 0.86580 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 71.98 0.65 -1.35 16 2 C -0.09 -1.63 2.72 -10.79 -0.03 -1.66 16 3 C -0.15 -2.57 8.84 71.98 0.64 -1.94 16 4 C 0.10 1.95 2.22 30.63 0.07 2.02 16 5 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 6 C -0.13 -3.17 3.59 30.69 0.11 -3.06 16 7 C -0.10 -2.12 2.62 -11.42 -0.03 -2.15 16 8 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 9 C 0.50 16.93 6.93 87.66 0.61 17.54 16 10 O -0.56 -25.99 13.28 -3.04 -0.04 -26.03 16 11 N -0.65 -20.53 5.29 -303.65 -1.61 -22.13 16 12 C 0.18 7.41 6.38 38.10 0.24 7.66 16 13 C -0.26 -9.62 9.95 22.58 0.22 -9.40 16 14 C -0.05 -2.15 10.02 22.20 0.22 -1.93 16 15 C -0.28 -13.99 7.39 22.75 0.17 -13.82 16 16 C 0.09 4.84 5.42 -21.31 -0.12 4.73 16 17 C -0.55 -33.39 9.42 23.46 0.22 -33.17 16 18 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 19 C 0.01 0.64 5.39 85.25 0.46 1.10 16 20 N -0.82 -47.53 13.65 21.82 0.30 -47.23 16 21 Si 1.12 51.22 24.79 68.60 1.70 52.92 16 22 H -0.25 -10.26 6.66 99.48 0.66 -9.60 16 23 H -0.26 -12.19 6.75 99.48 0.67 -11.51 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 C -0.25 -13.41 8.43 22.85 0.19 -13.22 16 26 C -0.14 -2.30 5.29 30.68 0.16 -2.13 16 27 C 0.06 0.81 6.84 72.01 0.49 1.30 16 28 O -0.39 -7.44 9.73 -148.98 -1.45 -8.89 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 0.96 6.49 -2.39 -0.02 0.94 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.89 6.58 -2.39 -0.02 1.87 16 37 H 0.05 1.57 8.03 -2.39 -0.02 1.55 16 38 H 0.42 8.79 8.13 -92.70 -0.75 8.04 16 39 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 40 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.10 4.79 3.25 -2.91 -0.01 4.78 16 42 H 0.28 16.00 8.73 -92.71 -0.81 15.19 16 43 H 0.09 5.07 5.96 -2.91 -0.02 5.05 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.11 1.10 7.55 -2.39 -0.02 1.08 16 46 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -75.67 365.76 3.29 -72.39 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.10 Total: 28.46 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 4.28 Total: -49.49 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -1.31 Total: -69.37 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -1.49 Total: -34.91 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 1.70 Total: 52.92 kcal Total: -75.67 3.29 -72.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821951697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.562 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds