Wall clock time and date at job start Tue Mar 31 2020 12:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47030 * 2 1 4 4 C 1.52999 * 109.46858 * 120.00388 * 2 1 3 5 5 N 1.46497 * 109.47404 * 65.00197 * 4 2 1 6 6 C 1.46500 * 119.99625 * 269.99879 * 5 4 2 7 7 C 1.50705 * 109.46965 * 269.99627 * 6 5 4 8 8 H 1.07997 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00133 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99961 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99611 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46959 * 90.00372 * 11 9 7 13 13 H 1.48503 * 109.47257 * 209.99579 * 11 9 7 14 14 H 1.48499 * 109.47458 * 329.99922 * 11 9 7 15 15 C 1.34774 * 120.00061 * 89.99944 * 5 4 2 16 16 O 1.21281 * 119.99668 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00357 * 359.97438 * 15 5 4 18 18 C 1.50694 * 109.47184 * 180.02562 * 17 15 5 19 19 C 1.38291 * 120.11946 * 90.00193 * 18 17 15 20 20 C 1.37929 * 120.35446 * 180.17130 * 19 18 17 21 21 C 1.39289 * 120.24278 * 0.06555 * 20 19 18 22 22 C 1.38981 * 118.85498 * 359.58943 * 21 20 19 23 23 C 1.37660 * 120.77699 * 0.54611 * 22 21 20 24 24 C 1.51649 * 106.97907 * 180.57567 * 22 21 20 25 25 C 1.54713 * 101.93881 * 15.71381 * 24 22 21 26 26 O 1.36126 * 129.87617 * 179.56466 * 21 20 19 27 27 H 1.09000 * 109.47187 * 59.99866 * 1 2 3 28 28 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47565 * 299.99629 * 1 2 3 30 30 H 1.09004 * 109.46933 * 239.99984 * 2 1 3 31 31 H 1.09004 * 109.46895 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47245 * 300.00098 * 3 2 1 33 33 H 1.09004 * 109.47276 * 60.00194 * 3 2 1 34 34 H 1.09001 * 109.47178 * 304.99176 * 4 2 1 35 35 H 1.09005 * 109.46758 * 185.00056 * 4 2 1 36 36 H 1.08996 * 109.47526 * 29.99669 * 6 5 4 37 37 H 1.09003 * 109.47255 * 150.00501 * 6 5 4 38 38 H 0.97000 * 119.99544 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.46689 * 59.99897 * 17 15 5 40 40 H 1.09006 * 109.46910 * 300.00525 * 17 15 5 41 41 H 1.08007 * 119.81963 * 0.19443 * 19 18 17 42 42 H 1.07996 * 119.87833 * 180.02562 * 20 19 18 43 43 H 1.08003 * 119.98294 * 179.61345 * 23 22 21 44 44 H 1.09002 * 110.94508 * 257.54041 * 24 22 21 45 45 H 1.08997 * 110.93949 * 133.88365 * 24 22 21 46 46 H 1.09003 * 110.74698 * 92.94680 * 25 24 22 47 47 H 1.09001 * 110.74689 * 216.11069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3745 -2.5660 1.7611 7 6 0.5716 -2.9410 3.2074 8 1 1.5507 -2.8640 3.6566 9 6 -0.4983 -3.3814 3.9574 10 7 -0.3264 -3.7081 5.2196 11 14 -2.1919 -3.5138 3.1806 12 1 -2.3636 -4.8680 2.5956 13 1 -3.2310 -3.2871 4.2170 14 1 -2.3275 -2.4919 2.1117 15 6 2.4715 -3.0331 0.6115 16 8 2.1504 -4.2016 0.5625 17 6 3.7858 -2.5875 0.0239 18 6 4.5052 -3.7772 -0.5574 19 6 4.3013 -4.1343 -1.8778 20 6 4.9545 -5.2244 -2.4139 21 6 5.8251 -5.9765 -1.6287 22 6 6.0271 -5.6032 -0.3053 23 6 5.3718 -4.5163 0.2279 24 6 7.0214 -6.5845 0.2848 25 6 7.6103 -7.2454 -0.9840 26 8 6.5566 -7.0793 -1.9478 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 -0.3485 -1.7532 1.6918 37 1 0.0042 -3.4299 1.2091 38 1 -1.0790 -4.0183 5.7471 39 1 4.3989 -2.1376 0.8049 40 1 3.6026 -1.8544 -0.7617 41 1 3.6272 -3.5562 -2.4925 42 1 4.7899 -5.4961 -3.4461 43 1 5.5336 -4.2414 1.2597 44 1 6.5172 -7.3216 0.9098 45 1 7.7957 -6.0634 0.8478 46 1 8.5133 -6.7267 -1.3059 47 1 7.8149 -8.3018 -0.8096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822231325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:31 Heat of formation + Delta-G solvation = -49.908198 kcal Electronic energy + Delta-G solvation = -26829.838495 eV Core-core repulsion = 23170.754593 eV Total energy + Delta-G solvation = -3659.083902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05271 -39.43862 -37.53376 -36.31705 -33.60303 -32.70727 -32.38383 -31.86604 -29.26024 -28.77747 -26.96332 -26.82336 -25.44141 -23.49496 -22.51551 -21.86465 -20.90199 -20.26880 -18.32147 -17.37678 -16.96672 -16.69301 -16.35142 -16.21833 -15.79340 -14.95110 -14.65238 -14.42913 -14.06498 -13.77350 -13.72641 -13.32911 -13.21795 -13.12944 -12.95736 -12.60702 -12.44493 -12.22389 -12.15462 -11.86682 -11.84520 -11.69576 -11.62841 -11.40570 -11.04844 -10.97546 -10.81623 -10.70703 -10.59358 -10.51437 -10.33271 -10.07596 -9.50862 -9.00256 -8.76853 -8.56743 -7.93006 -7.65623 -6.07384 -4.05256 1.38048 1.47237 3.24214 3.29506 3.35315 3.37658 3.38947 3.64574 4.00355 4.37819 4.40727 4.51959 4.82941 4.90360 4.95196 4.96657 5.06767 5.12538 5.18615 5.24665 5.26473 5.38767 5.42280 5.52691 5.61763 5.63212 5.67084 5.71636 5.74383 5.79246 5.81110 6.01977 6.07027 6.09828 6.16235 6.21407 6.31531 6.45140 6.47073 6.53130 6.64431 6.71341 6.77949 6.97714 7.23723 7.39203 7.64365 8.29437 8.49222 8.95274 9.03885 9.53566 11.06184 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.003800 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.489006 B = 7366.027666 C = 8804.458990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.115 3.885 5 N -0.592 5.592 6 C 0.213 3.787 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.508 3.492 16 O -0.531 6.531 17 C -0.099 4.099 18 C -0.081 4.081 19 C -0.072 4.072 20 C -0.136 4.136 21 C 0.096 3.904 22 C -0.173 4.173 23 C -0.053 4.053 24 C -0.110 4.110 25 C 0.053 3.947 26 O -0.308 6.308 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.589 4.651 -13.780 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.010 4.010 5 N -0.323 5.323 6 C 0.093 3.907 7 C -0.565 4.565 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.294 3.706 16 O -0.408 6.408 17 C -0.139 4.139 18 C -0.082 4.082 19 C -0.090 4.090 20 C -0.155 4.155 21 C 0.051 3.949 22 C -0.174 4.174 23 C -0.071 4.071 24 C -0.147 4.147 25 C -0.022 4.022 26 O -0.223 6.223 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.278 3.789 -13.803 19.524 hybrid contribution -0.913 -0.092 0.082 0.922 sum 12.364 3.696 -13.721 18.836 Atomic orbital electron populations 1.21946 0.94968 1.02696 1.01162 1.21599 0.96861 0.96002 0.98966 1.21781 1.00699 0.95849 1.01834 1.21577 0.99411 0.81999 0.97977 1.47882 1.21155 1.06561 1.56681 1.19746 0.80727 0.95668 0.94554 1.21351 0.97347 1.44388 0.93422 0.90848 1.24845 0.98816 0.94636 0.94691 1.69895 1.31583 1.44899 1.07343 0.86888 0.84403 0.79339 0.79310 1.19958 1.21103 1.18998 1.20228 0.85288 0.86110 0.78930 1.90699 1.74792 1.17346 1.57950 1.20696 0.95255 0.96504 1.01408 1.19206 0.97458 0.97685 0.93807 1.20665 0.97558 0.95907 0.94866 1.20124 0.99953 0.95792 0.99642 1.19537 0.94709 0.87528 0.93107 1.20640 1.03359 0.99014 0.94374 1.20113 0.94724 0.93032 0.99226 1.21781 0.97541 0.97313 0.98071 1.23786 0.89718 1.02230 0.86509 1.86789 1.42207 1.41510 1.51771 0.93435 0.91700 0.92446 0.91458 0.92743 0.92824 0.92425 0.89755 0.91318 0.94646 0.94855 0.92629 0.88487 0.88584 0.85415 0.85690 0.85854 0.89090 0.89184 0.90789 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.18 37.16 0.30 -1.77 16 2 C -0.11 -1.42 3.12 -90.62 -0.28 -1.70 16 3 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 4 C 0.11 1.72 4.70 -4.04 -0.02 1.70 16 5 N -0.59 -11.73 2.28 -175.06 -0.40 -12.13 16 6 C 0.21 5.13 3.30 -5.19 -0.02 5.12 16 7 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 11 Si 0.87 21.67 27.47 -169.99 -4.67 17.01 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 15 C 0.51 10.12 7.67 -10.99 -0.08 10.03 16 16 O -0.53 -13.17 15.61 5.56 0.09 -13.08 16 17 C -0.10 -1.41 4.39 -29.04 -0.13 -1.53 16 18 C -0.08 -1.21 4.38 -104.56 -0.46 -1.67 16 19 C -0.07 -1.00 9.68 -39.68 -0.38 -1.39 16 20 C -0.14 -1.89 10.06 -39.30 -0.40 -2.29 16 21 C 0.10 1.40 7.04 -38.92 -0.27 1.13 16 22 C -0.17 -2.46 6.27 -104.09 -0.65 -3.11 16 23 C -0.05 -0.79 9.69 -39.75 -0.39 -1.18 16 24 C -0.11 -1.18 7.11 -26.51 -0.19 -1.36 16 25 C 0.05 0.50 8.01 38.06 0.30 0.81 16 26 O -0.31 -4.20 11.10 -20.14 -0.22 -4.42 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.06 5.89 -51.93 -0.31 0.75 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.81 7.30 -51.93 -0.38 0.43 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 36 H 0.04 0.81 5.03 -51.93 -0.26 0.55 16 37 H 0.03 0.87 6.85 -51.93 -0.36 0.52 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.10 1.21 7.35 -51.93 -0.38 0.83 16 40 H 0.10 1.10 7.21 -51.93 -0.37 0.72 16 41 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -35.45 377.35 -8.98 -44.43 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.47 Total: 1.19 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.76 Total: -11.66 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.37 Total: -39.14 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.14 Total: -17.50 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.45 -8.98 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822231325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.479 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds