Wall clock time and date at job start Tue Mar 31 2020 12:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47030 * 2 1 4 4 C 1.52999 * 109.46858 * 120.00388 * 2 1 3 5 5 N 1.46497 * 109.47404 * 65.00197 * 4 2 1 6 6 C 1.46500 * 119.99625 * 269.99879 * 5 4 2 7 7 C 1.50705 * 109.46965 * 269.99627 * 6 5 4 8 8 H 1.07997 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00133 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99961 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99611 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46959 * 90.00372 * 11 9 7 13 13 H 1.48503 * 109.47257 * 209.99579 * 11 9 7 14 14 H 1.48499 * 109.47458 * 329.99922 * 11 9 7 15 15 C 1.34774 * 120.00061 * 89.99944 * 5 4 2 16 16 O 1.21281 * 119.99668 * 180.02562 * 15 5 4 17 17 C 1.50698 * 120.00357 * 359.97438 * 15 5 4 18 18 C 1.50694 * 109.47184 * 180.02562 * 17 15 5 19 19 C 1.38291 * 120.11946 * 90.00193 * 18 17 15 20 20 C 1.37929 * 120.35446 * 180.17130 * 19 18 17 21 21 C 1.39289 * 120.24278 * 0.06555 * 20 19 18 22 22 C 1.38981 * 118.85498 * 359.58943 * 21 20 19 23 23 C 1.37660 * 120.77699 * 0.54611 * 22 21 20 24 24 C 1.51649 * 106.97907 * 180.57567 * 22 21 20 25 25 C 1.54713 * 101.93881 * 15.71381 * 24 22 21 26 26 O 1.36126 * 129.87617 * 179.56466 * 21 20 19 27 27 H 1.09000 * 109.47187 * 59.99866 * 1 2 3 28 28 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47565 * 299.99629 * 1 2 3 30 30 H 1.09004 * 109.46933 * 239.99984 * 2 1 3 31 31 H 1.09004 * 109.46895 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47245 * 300.00098 * 3 2 1 33 33 H 1.09004 * 109.47276 * 60.00194 * 3 2 1 34 34 H 1.09001 * 109.47178 * 304.99176 * 4 2 1 35 35 H 1.09005 * 109.46758 * 185.00056 * 4 2 1 36 36 H 1.08996 * 109.47526 * 29.99669 * 6 5 4 37 37 H 1.09003 * 109.47255 * 150.00501 * 6 5 4 38 38 H 0.97000 * 119.99544 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.46689 * 59.99897 * 17 15 5 40 40 H 1.09006 * 109.46910 * 300.00525 * 17 15 5 41 41 H 1.08007 * 119.81963 * 0.19443 * 19 18 17 42 42 H 1.07996 * 119.87833 * 180.02562 * 20 19 18 43 43 H 1.08003 * 119.98294 * 179.61345 * 23 22 21 44 44 H 1.09002 * 110.94508 * 257.54041 * 24 22 21 45 45 H 1.08997 * 110.93949 * 133.88365 * 24 22 21 46 46 H 1.09003 * 110.74698 * 92.94680 * 25 24 22 47 47 H 1.09001 * 110.74689 * 216.11069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3745 -2.5660 1.7611 7 6 0.5716 -2.9410 3.2074 8 1 1.5507 -2.8640 3.6566 9 6 -0.4983 -3.3814 3.9574 10 7 -0.3264 -3.7081 5.2196 11 14 -2.1919 -3.5138 3.1806 12 1 -2.3636 -4.8680 2.5956 13 1 -3.2310 -3.2871 4.2170 14 1 -2.3275 -2.4919 2.1117 15 6 2.4715 -3.0331 0.6115 16 8 2.1504 -4.2016 0.5625 17 6 3.7858 -2.5875 0.0239 18 6 4.5052 -3.7772 -0.5574 19 6 4.3013 -4.1343 -1.8778 20 6 4.9545 -5.2244 -2.4139 21 6 5.8251 -5.9765 -1.6287 22 6 6.0271 -5.6032 -0.3053 23 6 5.3718 -4.5163 0.2279 24 6 7.0214 -6.5845 0.2848 25 6 7.6103 -7.2454 -0.9840 26 8 6.5566 -7.0793 -1.9478 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2951 36 1 -0.3485 -1.7532 1.6918 37 1 0.0042 -3.4299 1.2091 38 1 -1.0790 -4.0183 5.7471 39 1 4.3989 -2.1376 0.8049 40 1 3.6026 -1.8544 -0.7617 41 1 3.6272 -3.5562 -2.4925 42 1 4.7899 -5.4961 -3.4461 43 1 5.5336 -4.2414 1.2597 44 1 6.5172 -7.3216 0.9098 45 1 7.7957 -6.0634 0.8478 46 1 8.5133 -6.7267 -1.3059 47 1 7.8149 -8.3018 -0.8096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822231325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:30 Heat of formation + Delta-G solvation = -71.577171 kcal Electronic energy + Delta-G solvation = -26830.778132 eV Core-core repulsion = 23170.754593 eV Total energy + Delta-G solvation = -3660.023539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04121 -40.90375 -38.62669 -37.65919 -35.33272 -34.16184 -33.66501 -33.14733 -30.57171 -30.14988 -28.13010 -27.91289 -26.80525 -24.60802 -24.10468 -22.90029 -22.13049 -21.32949 -19.78012 -19.12840 -18.35426 -17.82331 -17.72460 -17.35307 -16.98577 -16.39423 -16.19078 -15.65366 -15.34862 -15.06557 -14.88655 -14.75901 -14.37561 -14.29739 -14.13431 -13.89623 -13.75381 -13.56900 -13.36012 -13.15199 -13.01740 -12.87609 -12.70387 -12.61787 -12.52747 -12.39390 -12.12096 -11.95550 -11.76751 -11.75359 -11.66753 -11.53757 -11.47688 -10.82356 -10.62394 -9.83086 -9.31755 -8.99333 -8.34556 -6.38050 0.30896 0.38504 1.29528 1.33788 1.41669 1.86493 2.29057 2.30669 2.35222 2.77404 3.00341 3.46769 3.64411 3.77682 3.88471 3.95570 4.03520 4.06613 4.15401 4.19371 4.30640 4.41372 4.42367 4.60097 4.62960 4.65275 4.70805 4.74190 4.78578 4.85510 4.87102 4.92939 4.94644 5.00053 5.11352 5.14685 5.15708 5.27004 5.32312 5.39794 5.46662 5.47668 5.56052 5.60731 5.65730 5.72797 6.22719 6.25747 6.63141 6.77134 7.22670 7.49404 8.82521 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.003800 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.489006 B = 7366.027666 C = 8804.458990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.107 3.893 5 N -0.596 5.596 6 C 0.227 3.773 7 C -0.533 4.533 8 H 0.029 0.971 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.941 3.059 12 H -0.279 1.279 13 H -0.274 1.274 14 H -0.237 1.237 15 C 0.500 3.500 16 O -0.591 6.591 17 C -0.083 4.083 18 C -0.099 4.099 19 C -0.077 4.077 20 C -0.146 4.146 21 C 0.081 3.919 22 C -0.188 4.188 23 C -0.073 4.073 24 C -0.111 4.111 25 C 0.050 3.950 26 O -0.325 6.325 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.010 0.990 38 H 0.267 0.733 39 H 0.118 0.882 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.247 6.339 -16.030 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.126 4.126 3 C -0.196 4.196 4 C -0.015 4.015 5 N -0.326 5.326 6 C 0.104 3.896 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.764 3.236 12 H -0.205 1.205 13 H -0.199 1.199 14 H -0.160 1.160 15 C 0.289 3.711 16 O -0.471 6.471 17 C -0.122 4.122 18 C -0.099 4.099 19 C -0.095 4.095 20 C -0.165 4.165 21 C 0.036 3.964 22 C -0.189 4.189 23 C -0.092 4.092 24 C -0.148 4.148 25 C -0.024 4.024 26 O -0.240 6.240 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.136 0.864 40 H 0.152 0.848 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.141 0.859 44 H 0.105 0.895 45 H 0.130 0.870 46 H 0.113 0.887 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.971 5.537 -16.065 21.998 hybrid contribution -1.011 -0.661 0.835 1.468 sum 12.960 4.876 -15.230 20.583 Atomic orbital electron populations 1.21961 0.96178 1.00905 1.02024 1.21541 0.95811 0.97634 0.97598 1.21740 1.01851 0.93524 1.02436 1.21912 1.01312 0.79246 0.99017 1.47965 1.19844 1.08809 1.56007 1.19352 0.83498 0.95346 0.91391 1.21620 0.95502 1.44235 0.95802 0.95262 1.25796 1.03503 0.94172 0.95105 1.70045 1.33150 1.46307 1.09078 0.85814 0.78891 0.79657 0.79245 1.20501 1.19876 1.16047 1.21248 0.86644 0.85227 0.78003 1.90664 1.76308 1.19886 1.60284 1.20675 0.91766 0.97074 1.02724 1.19394 0.97817 0.98284 0.94427 1.20952 0.97583 0.96113 0.94827 1.20445 0.99667 0.95752 1.00614 1.19832 0.95127 0.87921 0.93525 1.21039 1.03838 0.99210 0.94843 1.20314 0.95579 0.93851 0.99419 1.21894 0.97400 0.96671 0.98795 1.24099 0.89248 1.04030 0.85003 1.86757 1.43119 1.41100 1.53042 0.91196 0.94686 0.93038 0.90314 0.90921 0.91373 0.92721 0.91366 0.88318 0.92863 0.97163 0.92371 0.86435 0.84846 0.83341 0.83935 0.85934 0.89547 0.87003 0.88682 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.18 71.98 0.59 -3.31 16 2 C -0.11 -2.32 3.12 -10.80 -0.03 -2.35 16 3 C -0.14 -2.13 9.19 71.98 0.66 -1.46 16 4 C 0.11 3.05 4.70 86.38 0.41 3.46 16 5 N -0.60 -23.59 2.28 -826.15 -1.88 -25.48 16 6 C 0.23 11.07 3.30 85.63 0.28 11.35 16 7 C -0.53 -31.67 9.94 25.60 0.25 -31.41 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 9 C 0.01 0.72 5.47 84.66 0.46 1.19 16 10 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 11 Si 0.94 45.28 27.47 68.60 1.88 47.16 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 15 C 0.50 19.89 7.67 87.66 0.67 20.56 16 16 O -0.59 -30.18 15.61 -3.03 -0.05 -30.23 16 17 C -0.08 -2.22 4.39 29.10 0.13 -2.09 16 18 C -0.10 -2.88 4.38 -19.83 -0.09 -2.96 16 19 C -0.08 -2.06 9.68 22.21 0.21 -1.84 16 20 C -0.15 -3.94 10.06 22.45 0.23 -3.72 16 21 C 0.08 2.33 7.04 22.70 0.16 2.49 16 22 C -0.19 -5.32 6.27 -19.52 -0.12 -5.44 16 23 C -0.07 -2.21 9.69 22.16 0.21 -2.00 16 24 C -0.11 -2.26 7.11 30.74 0.22 -2.04 16 25 C 0.05 0.87 8.01 72.57 0.58 1.45 16 26 O -0.33 -8.55 11.10 -94.99 -1.05 -9.60 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.03 1.09 5.89 -2.39 -0.01 1.07 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.57 7.30 -2.38 -0.02 1.56 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 35 H 0.10 2.20 6.44 -2.38 -0.02 2.18 16 36 H 0.05 2.41 5.03 -2.39 -0.01 2.40 16 37 H 0.01 0.55 6.85 -2.39 -0.02 0.54 16 38 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 39 H 0.12 2.65 7.35 -2.39 -0.02 2.63 16 40 H 0.13 2.53 7.21 -2.38 -0.02 2.52 16 41 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 43 H 0.12 3.53 8.06 -2.91 -0.02 3.51 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -82.21 377.35 4.92 -77.29 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.90 Total: 19.16 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 4.83 Total: -18.13 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -1.58 Total: -85.64 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.10 Total: -39.83 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Total: -82.21 4.92 -77.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822231325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.709 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds