Wall clock time and date at job start Tue Mar 31 2020 12:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 13 13 N 1.46506 * 109.47075 * 59.99940 * 12 2 1 14 14 C 1.34777 * 120.00264 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99757 * 180.02562 * 14 13 12 17 17 C 1.50695 * 109.82406 * 84.11966 * 16 14 13 18 18 C 1.38229 * 120.00348 * 90.42411 * 17 16 14 19 19 C 1.38241 * 120.00029 * 179.79119 * 18 17 16 20 20 C 1.38236 * 120.00062 * 0.43762 * 19 18 17 21 21 C 1.38232 * 119.99759 * 359.81677 * 20 19 18 22 22 C 1.38239 * 120.00411 * 359.97430 * 21 20 19 23 23 C 1.54383 * 109.82882 * 205.00071 * 16 14 13 24 24 C 1.55312 * 102.25086 * 98.15954 * 23 16 14 25 25 C 1.54942 * 100.94059 * 34.13338 * 24 23 16 26 26 O 1.43236 * 109.83511 * 323.13637 * 16 14 13 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 35 35 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 36 36 H 0.96999 * 119.99689 * 0.02562 * 13 12 2 37 37 H 1.08000 * 120.00128 * 359.97438 * 18 17 16 38 38 H 1.08005 * 119.99955 * 180.27647 * 19 18 17 39 39 H 1.07997 * 120.00164 * 179.83518 * 20 19 18 40 40 H 1.08005 * 120.00074 * 180.02562 * 21 20 19 41 41 H 1.07995 * 120.00317 * 180.02562 * 22 21 20 42 42 H 1.08999 * 110.84790 * 216.34596 * 23 16 14 43 43 H 1.08997 * 110.85015 * 339.97284 * 23 16 14 44 44 H 1.08996 * 111.12586 * 152.05511 * 24 23 16 45 45 H 1.08997 * 111.12271 * 276.16879 * 24 23 16 46 46 H 1.08997 * 110.30984 * 82.47491 * 25 24 23 47 47 H 1.09004 * 110.30627 * 204.63963 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3445 -0.9491 5.1123 11 1 2.4880 -2.5654 3.7121 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6696 15 8 2.5750 -1.4769 -3.7808 16 6 1.3758 0.2200 -4.8999 17 6 2.2885 1.3720 -5.2327 18 6 3.3638 1.1796 -6.0798 19 6 4.1985 2.2374 -6.3884 20 6 3.9632 3.4855 -5.8428 21 6 2.8910 3.6767 -4.9915 22 6 2.0537 2.6199 -4.6862 23 6 1.3209 -0.7646 -6.0878 24 6 -0.1755 -1.1802 -6.1025 25 6 -0.8510 0.1370 -5.6449 26 8 0.0456 0.7010 -4.6747 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.7082 1.1608 3.4844 34 1 3.1300 -0.7217 -1.2490 35 1 1.6766 -1.7489 -1.2493 36 1 0.9943 0.7582 -2.3564 37 1 3.5500 0.2035 -6.5029 38 1 5.0360 2.0881 -7.0538 39 1 4.6169 4.3113 -6.0818 40 1 2.7069 4.6519 -4.5655 41 1 1.2158 2.7694 -4.0215 42 1 1.5942 -0.2662 -7.0178 43 1 1.9614 -1.6277 -5.9061 44 1 -0.4962 -1.4580 -7.1065 45 1 -0.3661 -1.9868 -5.3946 46 1 -0.9691 0.8151 -6.4901 47 1 -1.8187 -0.0726 -5.1891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822398995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:20 Heat of formation + Delta-G solvation = -77.615683 kcal Electronic energy + Delta-G solvation = -27794.281804 eV Core-core repulsion = 24133.996415 eV Total energy + Delta-G solvation = -3660.285389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03447 -39.90963 -39.24035 -38.09844 -35.08353 -33.58226 -33.16681 -32.42725 -31.69672 -29.32512 -27.60056 -27.52224 -26.87980 -24.69124 -23.83789 -22.93244 -22.27324 -20.92821 -20.60051 -19.16045 -18.29655 -17.81649 -17.05302 -16.78401 -16.70640 -16.49139 -15.96256 -15.70684 -15.67597 -15.04163 -14.81470 -14.71151 -14.55503 -14.31407 -14.10566 -13.96844 -13.61768 -13.21801 -13.11888 -13.01383 -12.79118 -12.70586 -12.61741 -12.29145 -12.28313 -12.22508 -12.13746 -11.90129 -11.79815 -11.51797 -11.49419 -11.21948 -10.74630 -10.47561 -10.41148 -9.99237 -9.82887 -9.68644 -8.02712 -6.19053 0.30675 0.48794 1.42379 1.44780 1.53127 1.53453 2.23861 2.47711 2.53789 2.87090 3.20580 3.44601 3.54078 3.73998 4.02608 4.07655 4.11951 4.18156 4.27878 4.34820 4.39425 4.46382 4.59811 4.66478 4.67608 4.71261 4.78326 4.86481 4.93391 4.96789 5.01971 5.02831 5.08875 5.12839 5.15751 5.16182 5.32918 5.51633 5.53965 5.55468 5.60435 5.63734 5.65509 5.86057 6.07397 6.10328 6.18228 6.41147 6.59826 6.84298 7.18698 7.48540 8.96490 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.003844 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.578017 B = 7282.517987 C = 7997.992365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.146 3.854 13 N -0.696 5.696 14 C 0.509 3.491 15 O -0.579 6.579 16 C 0.142 3.858 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.129 4.129 22 C -0.106 4.106 23 C -0.136 4.136 24 C -0.151 4.151 25 C 0.044 3.956 26 O -0.377 6.377 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.017 0.983 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.408 0.592 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 4.830 -21.244 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.175 4.175 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.200 1.200 12 C 0.022 3.978 13 N -0.346 5.346 14 C 0.295 3.705 15 O -0.460 6.460 16 C 0.099 3.901 17 C -0.111 4.111 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.147 4.147 22 C -0.124 4.124 23 C -0.174 4.174 24 C -0.188 4.188 25 C -0.032 4.032 26 O -0.296 6.296 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.245 0.755 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.137 0.863 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.559 4.394 -20.977 21.439 hybrid contribution 0.117 -0.419 1.319 1.389 sum -0.442 3.975 -19.658 20.061 Atomic orbital electron populations 1.21642 0.97145 0.98592 1.00173 1.18342 0.93220 0.92945 0.90292 1.21642 0.97797 0.97954 1.00142 1.21237 1.31835 1.12206 0.91459 0.93702 1.25468 0.95060 0.95595 1.00995 1.69912 1.36858 1.23333 1.23650 0.85729 0.78113 0.79018 0.79764 1.20453 1.20711 1.20044 1.21342 0.96930 0.95153 0.84378 1.46113 1.51595 1.31620 1.05270 1.21063 0.80075 0.83845 0.85525 1.90625 1.40505 1.27781 1.87067 1.20809 0.84095 0.92437 0.92711 1.19774 0.97355 0.93972 0.99972 1.21241 0.94303 1.00222 0.97626 1.21451 0.99699 0.92613 1.00518 1.21569 0.97376 0.98099 0.96342 1.21458 0.95257 0.99415 0.98560 1.21127 0.99684 0.92629 0.98983 1.23223 0.98977 0.98725 0.96460 1.23301 0.93398 0.97776 1.04345 1.23712 0.93447 0.93794 0.92243 1.88415 1.16112 1.69699 1.55407 0.95059 0.91704 0.96261 0.91655 0.96382 0.95146 0.92973 0.94373 0.94190 0.75529 0.85017 0.83315 0.83283 0.84101 0.86064 0.87308 0.89425 0.86324 0.91622 0.89785 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 2 C 0.05 2.55 0.50 -52.93 -0.03 2.53 16 3 C -0.12 -5.52 8.08 71.98 0.58 -4.94 16 4 C -0.53 -28.69 8.01 25.60 0.21 -28.49 16 5 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 6 C 0.03 1.54 5.15 84.66 0.44 1.97 16 7 N -0.90 -48.75 9.35 21.45 0.20 -48.55 16 8 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.15 6.62 4.50 86.38 0.39 7.01 16 13 N -0.70 -27.19 4.87 -463.05 -2.26 -29.44 16 14 C 0.51 19.01 6.73 87.66 0.59 19.60 16 15 O -0.58 -24.94 15.56 -3.04 -0.05 -24.99 16 16 C 0.14 4.05 0.98 -11.82 -0.01 4.04 16 17 C -0.11 -2.97 4.80 -19.87 -0.10 -3.06 16 18 C -0.12 -2.73 8.75 22.27 0.19 -2.54 16 19 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 20 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 21 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 22 C -0.11 -2.78 9.36 22.27 0.21 -2.57 16 23 C -0.14 -3.09 4.98 31.86 0.16 -2.93 16 24 C -0.15 -2.79 7.16 32.05 0.23 -2.56 16 25 C 0.04 0.83 7.78 72.65 0.56 1.40 16 26 O -0.38 -10.16 9.13 -148.98 -1.36 -11.52 16 27 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 28 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 29 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 33 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.41 15.06 5.67 -92.71 -0.53 14.54 16 37 H 0.13 2.82 6.85 -2.91 -0.02 2.80 16 38 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.12 3.25 7.55 -2.91 -0.02 3.23 16 42 H 0.11 1.94 6.88 -2.39 -0.02 1.92 16 43 H 0.09 2.32 6.75 -2.39 -0.02 2.30 16 44 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -64.04 369.69 3.68 -60.36 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.44 Total: 31.18 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.68 Total: -22.24 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -2.06 Total: -77.99 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -1.41 Total: -36.51 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -64.04 3.68 -60.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.251 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds