Wall clock time and date at job start Tue Mar 31 2020 12:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 C 1.50701 * 109.47264 * 239.99773 * 2 1 3 5 5 H 1.08002 * 119.99664 * 239.99969 * 4 2 1 6 6 C 1.37871 * 120.00095 * 59.99932 * 4 2 1 7 7 N 1.31518 * 119.99772 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99992 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47259 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46973 * 120.00179 * 8 6 4 11 11 H 1.48505 * 109.47314 * 239.99988 * 8 6 4 12 12 C 1.53005 * 109.47075 * 119.99596 * 2 1 3 13 13 N 1.46495 * 109.47307 * 300.00284 * 12 2 1 14 14 C 1.34776 * 120.00510 * 179.97438 * 13 12 2 15 15 O 1.21287 * 119.99592 * 359.97438 * 14 13 12 16 16 C 1.50691 * 120.00424 * 180.02562 * 14 13 12 17 17 C 1.50705 * 109.89666 * 275.51867 * 16 14 13 18 18 C 1.38232 * 120.00103 * 269.20411 * 17 16 14 19 19 C 1.38234 * 120.00004 * 179.76245 * 18 17 16 20 20 C 1.38237 * 119.99739 * 0.51576 * 19 18 17 21 21 C 1.38233 * 120.00095 * 359.73907 * 20 19 18 22 22 C 1.38233 * 120.00069 * 0.02562 * 21 20 19 23 23 C 1.54383 * 109.83304 * 154.58616 * 16 14 13 24 24 C 1.55566 * 102.27674 * 261.84122 * 23 16 14 25 25 C 1.54944 * 100.82489 * 325.88222 * 24 23 16 26 26 O 1.43235 * 109.83446 * 36.45273 * 16 14 13 27 27 H 1.08995 * 109.47447 * 300.00128 * 1 2 3 28 28 H 1.08999 * 109.47180 * 60.00537 * 1 2 3 29 29 H 1.09004 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47043 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46728 * 299.99740 * 3 2 1 32 32 H 1.09005 * 109.47265 * 59.99758 * 3 2 1 33 33 H 0.97001 * 119.99518 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47347 * 180.02562 * 12 2 1 35 35 H 1.09004 * 109.46931 * 60.00366 * 12 2 1 36 36 H 0.97003 * 120.00143 * 359.97438 * 13 12 2 37 37 H 1.08003 * 119.99685 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.00372 * 180.23004 * 19 18 17 39 39 H 1.08004 * 119.99404 * 179.72243 * 20 19 18 40 40 H 1.08004 * 120.00127 * 179.97438 * 21 20 19 41 41 H 1.08005 * 120.00098 * 179.97438 * 22 21 20 42 42 H 1.09007 * 110.84628 * 20.03551 * 23 16 14 43 43 H 1.09002 * 110.85103 * 143.44492 * 23 16 14 44 44 H 1.08997 * 111.22347 * 207.97660 * 24 23 16 45 45 H 1.09003 * 111.13190 * 83.74257 * 24 23 16 46 46 H 1.09002 * 110.30953 * 277.47426 * 25 24 23 47 47 H 1.09000 * 110.30834 * 155.40499 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1476 -2.2865 -3.6036 10 1 1.1680 -1.5868 -4.8163 11 1 3.1474 -0.1860 -4.8160 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8768 -0.4912 3.6696 15 8 2.5733 -1.4779 3.7809 16 6 1.3739 0.2189 4.9000 17 6 2.2902 1.3658 5.2406 18 6 3.3563 1.1677 6.0979 19 6 4.1996 2.2186 6.4066 20 6 3.9705 3.4702 5.8662 21 6 2.9013 3.6696 5.0131 22 6 2.0609 2.6175 4.7006 23 6 1.3084 -0.7688 6.0847 24 6 -0.1927 -1.1768 6.0926 25 6 -0.8564 0.1466 5.6356 26 8 0.0475 0.7082 4.6707 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9562 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7096 1.1616 -3.4844 34 1 3.1300 -0.7208 1.2496 35 1 1.6767 -1.7489 1.2493 36 1 0.9943 0.7583 2.3564 37 1 3.5328 0.1908 6.5233 38 1 5.0347 2.0630 7.0734 39 1 4.6268 4.2923 6.1109 40 1 2.7221 4.6476 4.5913 41 1 1.2252 2.7734 4.0344 42 1 1.9448 -1.6350 5.9032 43 1 1.5843 -0.2755 7.0167 44 1 -0.5206 -1.4554 7.0941 45 1 -0.3856 -1.9794 5.3807 46 1 -0.9740 0.8230 6.4823 47 1 -1.8239 -0.0545 5.1756 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822398996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:25 Heat of formation + Delta-G solvation = -61.708119 kcal Electronic energy + Delta-G solvation = -27789.623064 eV Core-core repulsion = 24130.027480 eV Total energy + Delta-G solvation = -3659.595585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89022 -38.66961 -38.14336 -36.30504 -33.35328 -32.57575 -32.01127 -30.80764 -30.71051 -28.31631 -25.71128 -25.67241 -25.05065 -23.60396 -22.94474 -21.71529 -21.40112 -19.62800 -18.74445 -17.85263 -17.33263 -16.02589 -15.88143 -15.71150 -15.19964 -14.84600 -14.77595 -14.52735 -14.31260 -13.94640 -13.57555 -13.42463 -13.19607 -12.90332 -12.72649 -12.52336 -12.15950 -12.05312 -11.92950 -11.39627 -11.39299 -11.28175 -11.16066 -10.98816 -10.89418 -10.83967 -10.63856 -10.37273 -10.34344 -10.14831 -9.58975 -9.44069 -9.22092 -8.92594 -8.77187 -8.64600 -8.41758 -8.26730 -5.99103 -4.09072 1.24144 1.39316 2.95579 3.28783 3.37237 3.41703 3.51981 3.60409 3.88187 4.36281 4.42410 4.50980 4.79995 4.90434 4.93197 5.01345 5.08723 5.16200 5.27538 5.29017 5.44197 5.52950 5.58013 5.60555 5.62960 5.87504 5.90199 5.98475 6.02175 6.26259 6.35696 6.41714 6.45837 6.48718 6.55738 6.79224 6.81899 6.89904 6.94777 7.00447 7.06663 7.09106 7.39971 7.60405 7.72587 8.04959 8.10247 8.19174 8.41718 8.69323 8.91722 9.56517 11.02266 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.003838 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.188077 B = 7293.537488 C = 8005.485434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.130 3.870 13 N -0.697 5.697 14 C 0.514 3.486 15 O -0.548 6.548 16 C 0.134 3.866 17 C -0.091 4.091 18 C -0.104 4.104 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.088 4.088 23 C -0.138 4.138 24 C -0.156 4.156 25 C 0.051 3.949 26 O -0.360 6.360 27 H 0.008 0.992 28 H 0.085 0.915 29 H 0.025 0.975 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.006 0.994 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.403 0.597 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 3.862 19.477 19.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.007 3.993 13 N -0.347 5.347 14 C 0.297 3.703 15 O -0.427 6.427 16 C 0.092 3.908 17 C -0.092 4.092 18 C -0.122 4.122 19 C -0.142 4.142 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.176 4.176 24 C -0.194 4.194 25 C -0.025 4.025 26 O -0.279 6.279 27 H 0.027 0.973 28 H 0.104 0.896 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.632 3.414 19.196 19.508 hybrid contribution 0.110 -0.148 -0.803 0.824 sum -0.521 3.266 18.393 18.688 Atomic orbital electron populations 1.21817 0.97672 0.99113 1.00189 1.18356 0.92872 0.92765 0.90458 1.21818 0.98495 0.98345 1.00100 1.21021 1.31332 1.12037 0.89895 0.92445 1.24876 0.94890 0.94936 0.98814 1.69824 1.36768 1.22752 1.23043 0.86528 0.78628 0.79750 0.83047 1.19789 1.21083 1.21077 1.21768 0.98102 0.95824 0.83574 1.46229 1.51302 1.31556 1.05579 1.20219 0.80989 0.84282 0.84766 1.90654 1.39282 1.26331 1.86472 1.20958 0.83659 0.91781 0.94443 1.19728 0.96698 0.94129 0.98623 1.21035 0.94406 0.99311 0.97456 1.21082 0.99414 0.93041 1.00697 1.21186 0.97695 0.97197 0.97450 1.21170 0.95280 0.99126 0.98395 1.21041 0.99073 0.91966 0.98500 1.23244 0.97914 0.99812 0.96641 1.23329 0.94734 0.98422 1.02881 1.23439 0.93623 0.93340 0.92142 1.88439 1.16051 1.69161 1.54280 0.97280 0.89637 0.95554 0.95528 0.89590 0.97469 0.93104 0.92729 0.92710 0.76063 0.85671 0.85979 0.86132 0.85813 0.85269 0.87725 0.89596 0.89545 0.90007 0.91909 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 3 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 4 C -0.50 -13.42 8.01 -34.44 -0.28 -13.70 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.86 9.35 55.43 0.52 -23.34 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.13 2.87 4.50 -4.04 -0.02 2.86 16 13 N -0.70 -13.46 4.87 -60.30 -0.29 -13.75 16 14 C 0.51 9.49 6.74 -10.99 -0.07 9.41 16 15 O -0.55 -11.54 15.56 5.55 0.09 -11.45 16 16 C 0.13 1.95 0.98 -92.20 -0.09 1.86 16 17 C -0.09 -1.27 4.81 -104.62 -0.50 -1.77 16 18 C -0.10 -1.31 8.75 -39.58 -0.35 -1.65 16 19 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 20 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 21 C -0.12 -1.44 10.05 -39.59 -0.40 -1.83 16 22 C -0.09 -1.19 9.36 -39.58 -0.37 -1.56 16 23 C -0.14 -1.65 5.00 -24.64 -0.12 -1.78 16 24 C -0.16 -1.58 7.18 -24.34 -0.17 -1.76 16 25 C 0.05 0.54 7.77 38.18 0.30 0.83 16 26 O -0.36 -5.02 9.10 -35.23 -0.32 -5.35 16 27 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 28 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 32 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.40 7.46 5.66 -40.82 -0.23 7.23 16 37 H 0.13 1.43 6.82 -52.48 -0.36 1.07 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.13 1.75 7.54 -52.48 -0.40 1.35 16 42 H 0.10 1.39 6.76 -51.93 -0.35 1.04 16 43 H 0.09 0.86 6.85 -51.93 -0.36 0.50 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -29.50 369.64 -9.13 -38.62 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.23 Total: 8.84 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.44 Total: -15.06 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.22 Total: -37.09 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.23 Total: -16.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.50 -9.13 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.084 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds