Wall clock time and date at job start Tue Mar 31 2020 11:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.53000 * 109.47537 * 239.99908 * 2 1 3 5 5 C 1.53004 * 109.46838 * 294.99792 * 4 2 1 6 6 H 1.09002 * 115.54706 * 29.27893 * 5 4 2 7 7 C 1.52999 * 117.49933 * 243.60729 * 5 4 2 8 8 C 1.52997 * 60.00002 * 252.51302 * 7 5 4 9 9 H 1.08997 * 117.50070 * 107.48764 * 8 7 5 10 10 C 1.50706 * 117.49861 * 252.51146 * 8 7 5 11 11 O 1.21280 * 119.99808 * 68.62196 * 10 8 7 12 12 N 1.34776 * 119.99921 * 248.61731 * 10 8 7 13 13 C 1.46502 * 119.99815 * 179.97438 * 12 10 8 14 14 C 1.50695 * 109.46786 * 180.02562 * 13 12 10 15 15 C 1.38304 * 119.93281 * 269.72974 * 14 13 12 16 16 C 1.38107 * 120.06674 * 179.72766 * 15 14 13 17 17 C 1.38873 * 119.93267 * 0.56852 * 16 15 14 18 18 O 1.35745 * 120.06873 * 179.68213 * 17 16 15 19 19 C 1.34836 * 116.99747 * 174.48877 * 18 17 16 20 20 H 1.07998 * 120.00354 * 5.06106 * 19 18 17 21 21 C 1.38657 * 120.00025 * 185.05654 * 19 18 17 22 22 N 1.31553 * 120.00247 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99860 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47050 * 89.99880 * 23 21 19 25 25 H 1.48495 * 109.47362 * 209.99660 * 23 21 19 26 26 H 1.48502 * 109.47209 * 330.00139 * 23 21 19 27 27 C 1.38881 * 119.85996 * 359.70763 * 17 16 15 28 28 C 1.38101 * 119.93459 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.47134 * 60.00512 * 1 2 3 30 30 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47487 * 300.00255 * 1 2 3 32 32 H 1.09004 * 109.47134 * 119.99488 * 2 1 3 33 33 H 1.09002 * 109.46971 * 60.00038 * 3 2 1 34 34 H 1.09002 * 109.46678 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46767 * 299.99706 * 3 2 1 36 36 H 1.08999 * 109.47020 * 55.00260 * 4 2 1 37 37 H 1.08998 * 109.46999 * 175.00163 * 4 2 1 38 38 H 1.09001 * 117.49823 * 359.97438 * 7 5 4 39 39 H 1.09002 * 117.49881 * 145.00024 * 7 5 4 40 40 H 0.96998 * 120.00066 * 0.02562 * 12 10 8 41 41 H 1.08990 * 109.47579 * 300.00489 * 13 12 10 42 42 H 1.08995 * 109.46681 * 60.00906 * 13 12 10 43 43 H 1.08000 * 119.96505 * 359.97438 * 15 14 13 44 44 H 1.08005 * 120.03074 * 180.27216 * 16 15 14 45 45 H 0.97000 * 119.99825 * 180.02562 * 22 21 19 46 46 H 1.08005 * 120.03597 * 180.02562 * 27 17 16 47 47 H 1.07995 * 119.96612 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 -2.1955 -1.1878 6 1 0.7164 -2.4084 -0.6415 7 6 2.7569 -3.2336 -1.1155 8 6 1.9516 -3.0662 -2.4055 9 1 2.4480 -2.5887 -3.2503 10 6 0.9687 -4.1527 -2.7582 11 8 -0.0282 -4.3103 -2.0857 12 7 1.1974 -4.9493 -3.8211 13 6 0.2422 -6.0059 -4.1636 14 6 0.7282 -6.7466 -5.3826 15 6 0.3507 -6.3227 -6.6438 16 6 0.7991 -6.9960 -7.7631 17 6 1.6203 -8.1068 -7.6209 18 8 2.0574 -8.7745 -8.7190 19 6 2.9418 -9.7722 -8.5170 20 1 3.2083 -10.0622 -7.5114 21 6 3.5089 -10.4258 -9.6004 22 7 4.3713 -11.3995 -9.4033 23 14 3.0483 -9.9238 -11.3397 24 1 3.9753 -8.8637 -11.8109 25 1 3.1470 -11.1024 -12.2377 26 1 1.6565 -9.4062 -11.3534 27 6 1.9931 -8.5334 -6.3529 28 6 1.5468 -7.8519 -5.2377 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6055 -0.2617 -2.1369 37 1 3.1263 -0.6443 -1.2950 38 1 3.7832 -2.8663 -1.1120 39 1 2.5760 -4.1295 -0.5215 40 1 1.9948 -4.8234 -4.3588 41 1 0.1535 -6.7004 -3.3283 42 1 -0.7313 -5.5620 -4.3719 43 1 -0.2923 -5.4619 -6.7536 44 1 0.5074 -6.6619 -8.7479 45 1 4.7683 -11.8565 -10.1613 46 1 2.6320 -9.3967 -6.2390 47 1 1.8366 -8.1829 -4.2514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823046141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:46 Heat of formation + Delta-G solvation = -39.694460 kcal Electronic energy + Delta-G solvation = -24874.779963 eV Core-core repulsion = 21216.138962 eV Total energy + Delta-G solvation = -3658.641001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.15018 -39.30364 -37.91803 -36.98255 -35.26478 -34.43113 -32.49274 -30.44687 -30.21314 -27.97849 -27.47163 -26.32041 -24.96326 -23.35065 -22.20099 -21.62218 -20.63375 -20.12826 -20.02673 -18.01509 -17.61845 -17.25342 -16.07407 -15.66544 -15.33961 -14.91594 -14.87271 -14.48182 -14.35979 -14.08808 -13.94740 -13.89508 -13.46067 -13.20335 -12.99940 -12.79837 -12.71049 -12.52251 -12.33930 -12.28964 -12.03421 -11.94012 -11.50732 -11.37072 -11.14682 -10.99959 -10.89969 -10.86303 -10.79145 -10.46343 -10.25858 -10.23794 -9.84930 -9.50262 -9.00887 -8.96576 -8.40066 -7.49865 -6.51471 -4.18517 1.93229 2.00598 2.46272 3.14855 3.19086 3.25621 3.33724 3.63469 4.15271 4.27319 4.41461 4.46650 4.54519 4.69594 4.72940 4.73540 4.86306 4.98199 5.00506 5.09253 5.15453 5.29598 5.32858 5.37910 5.43874 5.44946 5.51704 5.54030 5.57943 5.68268 5.70568 5.72543 5.83657 5.86482 5.92679 6.01171 6.06422 6.15290 6.22628 6.42849 6.48382 6.65804 6.88107 7.10473 7.16818 7.47715 7.57189 7.69131 7.92591 8.23835 8.83033 9.43562 10.55621 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.001883 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.514327 B =14869.470411 C =15002.857988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.119 4.119 6 H 0.120 0.880 7 C -0.149 4.149 8 C -0.191 4.191 9 H 0.122 0.878 10 C 0.539 3.461 11 O -0.549 6.549 12 N -0.718 5.718 13 C 0.178 3.822 14 C -0.206 4.206 15 C -0.056 4.056 16 C -0.195 4.195 17 C 0.166 3.834 18 O -0.213 6.213 19 C -0.392 4.392 20 H 0.108 0.892 21 C 0.065 3.935 22 N -0.875 5.875 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.224 4.224 28 C -0.052 4.052 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.403 0.597 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.281 0.719 46 H 0.135 0.865 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 20.400 15.062 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.123 4.123 5 C -0.137 4.137 6 H 0.138 0.862 7 C -0.187 4.187 8 C -0.212 4.212 9 H 0.140 0.860 10 C 0.325 3.675 11 O -0.427 6.427 12 N -0.369 5.369 13 C 0.055 3.945 14 C -0.207 4.207 15 C -0.075 4.075 16 C -0.214 4.214 17 C 0.113 3.887 18 O -0.117 6.117 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.512 5.512 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.243 4.243 28 C -0.071 4.071 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.237 0.763 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.091 0.909 46 H 0.152 0.848 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.096 20.098 15.173 25.513 hybrid contribution 0.454 -0.110 -1.132 1.225 sum -3.642 19.988 14.040 24.697 Atomic orbital electron populations 1.21913 0.95112 1.02258 1.01549 1.21071 0.96082 0.95862 0.98255 1.21849 1.00868 0.96044 1.01772 1.21289 1.00565 0.92182 0.98272 1.22505 1.00501 0.91941 0.98794 0.86204 1.23098 0.96703 1.01638 0.97233 1.22320 1.03148 1.01146 0.94570 0.86005 1.19684 0.85939 0.81677 0.80174 1.90675 1.29013 1.71440 1.51587 1.46254 1.26489 1.33950 1.30179 1.19997 0.91484 0.88157 0.94834 1.19280 1.07186 1.00739 0.93534 1.20540 0.97703 0.97986 0.91294 1.20215 1.04759 0.97584 0.98874 1.19179 0.92337 0.90389 0.86758 1.83575 1.54690 1.43868 1.29550 1.20788 1.19262 1.09818 0.96870 0.87496 1.24490 0.94764 0.94988 0.99692 1.69641 1.27051 1.21553 1.32942 0.86173 0.80342 0.78274 0.82082 1.19806 1.20669 1.18326 1.21284 1.07028 1.04180 0.91815 1.20702 0.94885 0.93819 0.97702 0.92723 0.92076 0.92931 0.91044 0.92726 0.92751 0.92697 0.91346 0.91590 0.87870 0.88339 0.76268 0.91504 0.91477 0.86773 0.86348 0.90896 0.84770 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.01 37.15 0.33 -0.73 16 2 C -0.09 -0.61 2.92 -90.62 -0.26 -0.88 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C -0.09 -0.59 4.96 -26.73 -0.13 -0.72 16 5 C -0.12 -1.04 5.04 -90.62 -0.46 -1.50 16 6 H 0.12 1.25 5.91 -51.93 -0.31 0.95 16 7 C -0.15 -1.23 9.88 -26.73 -0.26 -1.50 16 8 C -0.19 -1.81 5.91 -91.77 -0.54 -2.35 16 9 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 10 C 0.54 6.90 7.61 -10.98 -0.08 6.81 16 11 O -0.55 -8.95 16.26 5.56 0.09 -8.86 16 12 N -0.72 -8.72 5.55 -61.48 -0.34 -9.06 16 13 C 0.18 2.41 5.80 -5.19 -0.03 2.38 16 14 C -0.21 -3.15 5.25 -104.58 -0.55 -3.70 16 15 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 16 C -0.20 -3.62 9.99 -39.39 -0.39 -4.01 16 17 C 0.17 3.65 6.65 -39.11 -0.26 3.39 16 18 O -0.21 -5.40 8.59 0.05 0.00 -5.40 16 19 C -0.39 -10.68 9.95 30.89 0.31 -10.37 16 20 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 21 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 22 N -0.87 -24.59 13.96 55.48 0.77 -23.81 16 23 Si 0.91 21.03 28.62 -169.99 -4.86 16.17 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.22 -4.55 9.17 -39.39 -0.36 -4.91 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.49 6.41 -51.93 -0.33 0.16 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 4.32 8.46 -40.82 -0.35 3.97 16 41 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.07 0.91 8.08 -51.93 -0.42 0.50 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 45 H 0.28 7.28 8.31 -40.82 -0.34 6.95 16 46 H 0.13 2.89 5.64 -52.48 -0.30 2.60 16 47 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -29.70 390.18 -9.12 -38.82 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.44 Total: 5.71 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.22 Total: -19.45 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.43 Total: -32.87 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.70 -9.12 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823046141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.876 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds