Wall clock time and date at job start Tue Mar 31 2020 11:26:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53006 * 109.46995 * 2 1
4 4 C 1.53000 * 109.47537 * 239.99908 * 2 1 3
5 5 C 1.53004 * 109.46838 * 294.99792 * 4 2 1
6 6 H 1.09002 * 115.54706 * 29.27893 * 5 4 2
7 7 C 1.52999 * 117.49933 * 243.60729 * 5 4 2
8 8 C 1.52997 * 60.00002 * 252.51302 * 7 5 4
9 9 H 1.08997 * 117.50070 * 107.48764 * 8 7 5
10 10 C 1.50706 * 117.49861 * 252.51146 * 8 7 5
11 11 O 1.21280 * 119.99808 * 68.62196 * 10 8 7
12 12 N 1.34776 * 119.99921 * 248.61731 * 10 8 7
13 13 C 1.46502 * 119.99815 * 179.97438 * 12 10 8
14 14 C 1.50695 * 109.46786 * 180.02562 * 13 12 10
15 15 C 1.38304 * 119.93281 * 269.72974 * 14 13 12
16 16 C 1.38107 * 120.06674 * 179.72766 * 15 14 13
17 17 C 1.38873 * 119.93267 * 0.56852 * 16 15 14
18 18 O 1.35745 * 120.06873 * 179.68213 * 17 16 15
19 19 C 1.34836 * 116.99747 * 174.48877 * 18 17 16
20 20 H 1.07998 * 120.00354 * 5.06106 * 19 18 17
21 21 C 1.38657 * 120.00025 * 185.05654 * 19 18 17
22 22 N 1.31553 * 120.00247 * 180.02562 * 21 19 18
23 23 Si 1.86804 * 119.99860 * 0.02562 * 21 19 18
24 24 H 1.48500 * 109.47050 * 89.99880 * 23 21 19
25 25 H 1.48495 * 109.47362 * 209.99660 * 23 21 19
26 26 H 1.48502 * 109.47209 * 330.00139 * 23 21 19
27 27 C 1.38881 * 119.85996 * 359.70763 * 17 16 15
28 28 C 1.38101 * 119.93459 * 359.97438 * 27 17 16
29 29 H 1.09004 * 109.47134 * 60.00512 * 1 2 3
30 30 H 1.09002 * 109.47311 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47487 * 300.00255 * 1 2 3
32 32 H 1.09004 * 109.47134 * 119.99488 * 2 1 3
33 33 H 1.09002 * 109.46971 * 60.00038 * 3 2 1
34 34 H 1.09002 * 109.46678 * 179.97438 * 3 2 1
35 35 H 1.08994 * 109.46767 * 299.99706 * 3 2 1
36 36 H 1.08999 * 109.47020 * 55.00260 * 4 2 1
37 37 H 1.08998 * 109.46999 * 175.00163 * 4 2 1
38 38 H 1.09001 * 117.49823 * 359.97438 * 7 5 4
39 39 H 1.09002 * 117.49881 * 145.00024 * 7 5 4
40 40 H 0.96998 * 120.00066 * 0.02562 * 12 10 8
41 41 H 1.08990 * 109.47579 * 300.00489 * 13 12 10
42 42 H 1.08995 * 109.46681 * 60.00906 * 13 12 10
43 43 H 1.08000 * 119.96505 * 359.97438 * 15 14 13
44 44 H 1.08005 * 120.03074 * 180.27216 * 16 15 14
45 45 H 0.97000 * 119.99825 * 180.02562 * 22 21 19
46 46 H 1.08005 * 120.03597 * 180.02562 * 27 17 16
47 47 H 1.07995 * 119.96612 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 1.6353 -2.1955 -1.1878
6 1 0.7164 -2.4084 -0.6415
7 6 2.7569 -3.2336 -1.1155
8 6 1.9516 -3.0662 -2.4055
9 1 2.4480 -2.5887 -3.2503
10 6 0.9687 -4.1527 -2.7582
11 8 -0.0282 -4.3103 -2.0857
12 7 1.1974 -4.9493 -3.8211
13 6 0.2422 -6.0059 -4.1636
14 6 0.7282 -6.7466 -5.3826
15 6 0.3507 -6.3227 -6.6438
16 6 0.7991 -6.9960 -7.7631
17 6 1.6203 -8.1068 -7.6209
18 8 2.0574 -8.7745 -8.7190
19 6 2.9418 -9.7722 -8.5170
20 1 3.2083 -10.0622 -7.5114
21 6 3.5089 -10.4258 -9.6004
22 7 4.3713 -11.3995 -9.4033
23 14 3.0483 -9.9238 -11.3397
24 1 3.9753 -8.8637 -11.8109
25 1 3.1470 -11.1024 -12.2377
26 1 1.6565 -9.4062 -11.3534
27 6 1.9931 -8.5334 -6.3529
28 6 1.5468 -7.8519 -5.2377
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3634 0.5139 0.8899
32 1 1.8933 -0.5138 0.8901
33 1 1.6765 1.9564 0.8900
34 1 3.1299 1.4425 0.0005
35 1 1.6766 1.9563 -0.8900
36 1 1.6055 -0.2617 -2.1369
37 1 3.1263 -0.6443 -1.2950
38 1 3.7832 -2.8663 -1.1120
39 1 2.5760 -4.1295 -0.5215
40 1 1.9948 -4.8234 -4.3588
41 1 0.1535 -6.7004 -3.3283
42 1 -0.7313 -5.5620 -4.3719
43 1 -0.2923 -5.4619 -6.7536
44 1 0.5074 -6.6619 -8.7479
45 1 4.7683 -11.8565 -10.1613
46 1 2.6320 -9.3967 -6.2390
47 1 1.8366 -8.1829 -4.2514
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000823046141.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:46
Heat of formation + Delta-G solvation = -55.638049 kcal
Electronic energy + Delta-G solvation = -24875.471329 eV
Core-core repulsion = 21216.138962 eV
Total energy + Delta-G solvation = -3659.332367 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.21631 -40.79856 -38.91052 -38.30068 -35.92016 -35.61699 -34.45178 -31.91827
-31.61593 -28.65853 -27.99576 -27.78684 -26.47240 -24.34820 -23.72975 -22.30909
-22.03791 -20.99467 -20.68560 -19.85339 -19.16101 -18.37219 -17.12989 -16.78678
-16.51000 -16.10643 -15.99085 -15.74715 -15.63176 -15.44839 -15.16805 -14.92404
-14.57535 -14.44446 -14.29449 -14.07745 -13.88142 -13.55575 -13.32754 -13.13131
-13.06598 -12.92353 -12.60252 -12.50081 -12.48510 -12.35230 -11.96770 -11.94859
-11.66260 -11.45310 -11.32088 -11.16230 -11.00203 -10.92607 -10.75178 -10.08875
-9.85784 -9.11385 -8.51581 -6.24791 0.46708 0.52296 1.32151 1.35275
1.50790 1.51879 2.22323 2.26960 2.77316 2.89913 3.03654 3.12873
3.65501 3.77298 3.82857 3.89749 3.98624 4.11214 4.11762 4.15902
4.23540 4.33761 4.40731 4.50400 4.52159 4.69844 4.77677 4.81163
4.85761 4.87188 4.93189 4.94730 4.97348 5.04226 5.12054 5.18150
5.19792 5.30212 5.31790 5.40902 5.43397 5.52059 5.54734 5.56709
5.68407 5.76933 5.86541 6.17057 6.58081 6.82416 7.24589 7.54898
8.59565
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.027729 B = 0.001883 C = 0.001866
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1009.514327 B =14869.470411 C =15002.857988
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.094 4.094
3 C -0.146 4.146
4 C -0.080 4.080
5 C -0.119 4.119
6 H 0.098 0.902
7 C -0.140 4.140
8 C -0.195 4.195
9 H 0.145 0.855
10 C 0.537 3.463
11 O -0.588 6.588
12 N -0.712 5.712
13 C 0.182 3.818
14 C -0.174 4.174
15 C -0.045 4.045
16 C -0.191 4.191
17 C 0.129 3.871
18 O -0.241 6.241
19 C -0.401 4.401
20 H 0.083 0.917
21 C 0.011 3.989
22 N -0.920 5.920
23 Si 0.970 3.030
24 H -0.265 1.265
25 H -0.269 1.269
26 H -0.262 1.262
27 C -0.238 4.238
28 C -0.050 4.050
29 H 0.053 0.947
30 H 0.046 0.954
31 H 0.057 0.943
32 H 0.070 0.930
33 H 0.056 0.944
34 H 0.060 0.940
35 H 0.055 0.945
36 H 0.068 0.932
37 H 0.080 0.920
38 H 0.127 0.873
39 H 0.087 0.913
40 H 0.412 0.588
41 H 0.066 0.934
42 H 0.075 0.925
43 H 0.154 0.846
44 H 0.132 0.868
45 H 0.285 0.715
46 H 0.110 0.890
47 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.050 23.537 15.565 28.507
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.112 4.112
3 C -0.203 4.203
4 C -0.117 4.117
5 C -0.138 4.138
6 H 0.116 0.884
7 C -0.177 4.177
8 C -0.216 4.216
9 H 0.163 0.837
10 C 0.325 3.675
11 O -0.469 6.469
12 N -0.363 5.363
13 C 0.059 3.941
14 C -0.175 4.175
15 C -0.064 4.064
16 C -0.210 4.210
17 C 0.080 3.920
18 O -0.148 6.148
19 C -0.477 4.477
20 H 0.100 0.900
21 C -0.188 4.188
22 N -0.561 5.561
23 Si 0.793 3.207
24 H -0.190 1.190
25 H -0.194 1.194
26 H -0.187 1.187
27 C -0.257 4.257
28 C -0.069 4.069
29 H 0.072 0.928
30 H 0.065 0.935
31 H 0.076 0.924
32 H 0.088 0.912
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.074 0.926
36 H 0.087 0.913
37 H 0.099 0.901
38 H 0.146 0.854
39 H 0.105 0.895
40 H 0.249 0.751
41 H 0.084 0.916
42 H 0.093 0.907
43 H 0.171 0.829
44 H 0.150 0.850
45 H 0.095 0.905
46 H 0.128 0.872
47 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -4.682 23.269 15.700 28.458
hybrid contribution 0.460 -0.884 -0.948 1.375
sum -4.222 22.385 14.752 27.139
Atomic orbital electron populations
1.21908 0.95799 1.01336 1.01777 1.21068 0.95494 0.96538 0.98130
1.21826 1.01285 0.95230 1.01960 1.21273 1.01416 0.90687 0.98335
1.22490 1.00007 0.93212 0.98061 0.88357 1.23187 0.97733 1.01021
0.95795 1.22360 1.02975 1.00468 0.95798 0.83686 1.20217 0.85883
0.81927 0.79448 1.90665 1.30835 1.72582 1.52784 1.46108 1.26483
1.33375 1.30285 1.19903 0.92076 0.88475 0.93654 1.19527 1.04375
0.99138 0.94446 1.20948 0.96953 0.98276 0.90189 1.20521 1.03491
0.96304 1.00709 1.19735 0.93848 0.91848 0.86610 1.83524 1.55844
1.44571 1.30907 1.20710 1.20071 1.10771 0.96137 0.89978 1.25289
0.94855 0.95087 1.03552 1.69726 1.28954 1.23251 1.34148 0.85218
0.79708 0.78353 0.77454 1.18957 1.19371 1.18657 1.21271 1.07483
1.04189 0.92779 1.20910 0.94622 0.93829 0.97544 0.92813 0.93536
0.92411 0.91179 0.92473 0.92055 0.92628 0.91329 0.90129 0.85442
0.89467 0.75146 0.91608 0.90665 0.82882 0.85004 0.90528 0.87223
0.84940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.97 9.01 71.98 0.65 -1.33 16
2 C -0.09 -1.05 2.92 -10.79 -0.03 -1.08 16
3 C -0.15 -1.31 9.19 71.98 0.66 -0.65 16
4 C -0.08 -0.90 4.96 30.60 0.15 -0.75 16
5 C -0.12 -1.86 5.04 -10.79 -0.05 -1.91 16
6 H 0.10 2.01 5.91 -2.39 -0.01 1.99 16
7 C -0.14 -1.96 9.88 30.59 0.30 -1.66 16
8 C -0.20 -3.17 5.91 -11.54 -0.07 -3.24 16
9 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16
10 C 0.54 12.52 7.61 87.66 0.67 13.19 16
11 O -0.59 -18.38 16.26 -3.03 -0.05 -18.43 16
12 N -0.71 -15.04 5.55 -466.80 -2.59 -17.63 16
13 C 0.18 4.32 5.80 85.63 0.50 4.81 16
14 C -0.17 -4.76 5.25 -19.83 -0.10 -4.87 16
15 C -0.05 -1.25 9.69 22.25 0.22 -1.04 16
16 C -0.19 -6.72 9.99 22.39 0.22 -6.50 16
17 C 0.13 5.72 6.65 22.58 0.15 5.87 16
18 O -0.24 -12.64 8.59 -22.75 -0.20 -12.84 16
19 C -0.40 -22.97 9.95 67.92 0.68 -22.29 16
20 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16
21 C 0.01 0.62 5.49 84.83 0.47 1.09 16
22 N -0.92 -53.93 13.96 21.61 0.30 -53.63 16
23 Si 0.97 44.28 28.62 68.60 1.96 46.24 16
24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16
25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16
26 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16
27 C -0.24 -9.88 9.17 22.39 0.21 -9.67 16
28 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16
29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.05 0.74 6.41 -2.39 -0.02 0.72 16
31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16
33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16
34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
37 H 0.08 0.70 7.87 -2.39 -0.02 0.68 16
38 H 0.13 1.18 8.03 -2.39 -0.02 1.16 16
39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
40 H 0.41 7.35 8.46 -92.71 -0.78 6.57 16
41 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16
42 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16
43 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16
44 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16
45 H 0.29 15.32 8.31 -92.71 -0.77 14.55 16
46 H 0.11 5.07 5.64 -2.91 -0.02 5.06 16
47 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16
Total: -1.00 -67.63 390.18 4.43 -63.19
By element:
Atomic # 1 Polarization: 24.34 SS G_CDS: 0.18 Total: 24.52 kcal
Atomic # 6 Polarization: -36.25 SS G_CDS: 4.82 Total: -31.43 kcal
Atomic # 7 Polarization: -68.97 SS G_CDS: -2.29 Total: -71.26 kcal
Atomic # 8 Polarization: -31.02 SS G_CDS: -0.24 Total: -31.26 kcal
Atomic # 14 Polarization: 44.28 SS G_CDS: 1.96 Total: 46.24 kcal
Total: -67.63 4.43 -63.19 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000823046141.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.557 kcal
(2) G-P(sol) polarization free energy of solvation -67.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds