Wall clock time and date at job start Tue Mar 31 2020 11:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 C 1.53000 * 109.47537 * 239.99908 * 2 1 3 5 5 C 1.53004 * 109.46838 * 294.99792 * 4 2 1 6 6 H 1.09002 * 115.54706 * 29.27893 * 5 4 2 7 7 C 1.52999 * 117.49933 * 243.60729 * 5 4 2 8 8 C 1.52997 * 60.00002 * 252.51302 * 7 5 4 9 9 H 1.08997 * 117.50070 * 107.48764 * 8 7 5 10 10 C 1.50706 * 117.49861 * 252.51146 * 8 7 5 11 11 O 1.21280 * 119.99808 * 68.62196 * 10 8 7 12 12 N 1.34776 * 119.99921 * 248.61731 * 10 8 7 13 13 C 1.46502 * 119.99815 * 179.97438 * 12 10 8 14 14 C 1.50695 * 109.46786 * 180.02562 * 13 12 10 15 15 C 1.38304 * 119.93281 * 269.72974 * 14 13 12 16 16 C 1.38107 * 120.06674 * 179.72766 * 15 14 13 17 17 C 1.38873 * 119.93267 * 0.56852 * 16 15 14 18 18 O 1.35745 * 120.06873 * 179.68213 * 17 16 15 19 19 C 1.34836 * 116.99747 * 174.48877 * 18 17 16 20 20 H 1.07998 * 120.00354 * 5.06106 * 19 18 17 21 21 C 1.38657 * 120.00025 * 185.05654 * 19 18 17 22 22 N 1.31553 * 120.00247 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99860 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47050 * 89.99880 * 23 21 19 25 25 H 1.48495 * 109.47362 * 209.99660 * 23 21 19 26 26 H 1.48502 * 109.47209 * 330.00139 * 23 21 19 27 27 C 1.38881 * 119.85996 * 359.70763 * 17 16 15 28 28 C 1.38101 * 119.93459 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.47134 * 60.00512 * 1 2 3 30 30 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47487 * 300.00255 * 1 2 3 32 32 H 1.09004 * 109.47134 * 119.99488 * 2 1 3 33 33 H 1.09002 * 109.46971 * 60.00038 * 3 2 1 34 34 H 1.09002 * 109.46678 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46767 * 299.99706 * 3 2 1 36 36 H 1.08999 * 109.47020 * 55.00260 * 4 2 1 37 37 H 1.08998 * 109.46999 * 175.00163 * 4 2 1 38 38 H 1.09001 * 117.49823 * 359.97438 * 7 5 4 39 39 H 1.09002 * 117.49881 * 145.00024 * 7 5 4 40 40 H 0.96998 * 120.00066 * 0.02562 * 12 10 8 41 41 H 1.08990 * 109.47579 * 300.00489 * 13 12 10 42 42 H 1.08995 * 109.46681 * 60.00906 * 13 12 10 43 43 H 1.08000 * 119.96505 * 359.97438 * 15 14 13 44 44 H 1.08005 * 120.03074 * 180.27216 * 16 15 14 45 45 H 0.97000 * 119.99825 * 180.02562 * 22 21 19 46 46 H 1.08005 * 120.03597 * 180.02562 * 27 17 16 47 47 H 1.07995 * 119.96612 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 -2.1955 -1.1878 6 1 0.7164 -2.4084 -0.6415 7 6 2.7569 -3.2336 -1.1155 8 6 1.9516 -3.0662 -2.4055 9 1 2.4480 -2.5887 -3.2503 10 6 0.9687 -4.1527 -2.7582 11 8 -0.0282 -4.3103 -2.0857 12 7 1.1974 -4.9493 -3.8211 13 6 0.2422 -6.0059 -4.1636 14 6 0.7282 -6.7466 -5.3826 15 6 0.3507 -6.3227 -6.6438 16 6 0.7991 -6.9960 -7.7631 17 6 1.6203 -8.1068 -7.6209 18 8 2.0574 -8.7745 -8.7190 19 6 2.9418 -9.7722 -8.5170 20 1 3.2083 -10.0622 -7.5114 21 6 3.5089 -10.4258 -9.6004 22 7 4.3713 -11.3995 -9.4033 23 14 3.0483 -9.9238 -11.3397 24 1 3.9753 -8.8637 -11.8109 25 1 3.1470 -11.1024 -12.2377 26 1 1.6565 -9.4062 -11.3534 27 6 1.9931 -8.5334 -6.3529 28 6 1.5468 -7.8519 -5.2377 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6055 -0.2617 -2.1369 37 1 3.1263 -0.6443 -1.2950 38 1 3.7832 -2.8663 -1.1120 39 1 2.5760 -4.1295 -0.5215 40 1 1.9948 -4.8234 -4.3588 41 1 0.1535 -6.7004 -3.3283 42 1 -0.7313 -5.5620 -4.3719 43 1 -0.2923 -5.4619 -6.7536 44 1 0.5074 -6.6619 -8.7479 45 1 4.7683 -11.8565 -10.1613 46 1 2.6320 -9.3967 -6.2390 47 1 1.8366 -8.1829 -4.2514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823046141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:46 Heat of formation + Delta-G solvation = -55.638049 kcal Electronic energy + Delta-G solvation = -24875.471329 eV Core-core repulsion = 21216.138962 eV Total energy + Delta-G solvation = -3659.332367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21631 -40.79856 -38.91052 -38.30068 -35.92016 -35.61699 -34.45178 -31.91827 -31.61593 -28.65853 -27.99576 -27.78684 -26.47240 -24.34820 -23.72975 -22.30909 -22.03791 -20.99467 -20.68560 -19.85339 -19.16101 -18.37219 -17.12989 -16.78678 -16.51000 -16.10643 -15.99085 -15.74715 -15.63176 -15.44839 -15.16805 -14.92404 -14.57535 -14.44446 -14.29449 -14.07745 -13.88142 -13.55575 -13.32754 -13.13131 -13.06598 -12.92353 -12.60252 -12.50081 -12.48510 -12.35230 -11.96770 -11.94859 -11.66260 -11.45310 -11.32088 -11.16230 -11.00203 -10.92607 -10.75178 -10.08875 -9.85784 -9.11385 -8.51581 -6.24791 0.46708 0.52296 1.32151 1.35275 1.50790 1.51879 2.22323 2.26960 2.77316 2.89913 3.03654 3.12873 3.65501 3.77298 3.82857 3.89749 3.98624 4.11214 4.11762 4.15902 4.23540 4.33761 4.40731 4.50400 4.52159 4.69844 4.77677 4.81163 4.85761 4.87188 4.93189 4.94730 4.97348 5.04226 5.12054 5.18150 5.19792 5.30212 5.31790 5.40902 5.43397 5.52059 5.54734 5.56709 5.68407 5.76933 5.86541 6.17057 6.58081 6.82416 7.24589 7.54898 8.59565 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027729 B = 0.001883 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.514327 B =14869.470411 C =15002.857988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.080 4.080 5 C -0.119 4.119 6 H 0.098 0.902 7 C -0.140 4.140 8 C -0.195 4.195 9 H 0.145 0.855 10 C 0.537 3.463 11 O -0.588 6.588 12 N -0.712 5.712 13 C 0.182 3.818 14 C -0.174 4.174 15 C -0.045 4.045 16 C -0.191 4.191 17 C 0.129 3.871 18 O -0.241 6.241 19 C -0.401 4.401 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.920 5.920 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.262 1.262 27 C -0.238 4.238 28 C -0.050 4.050 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.412 0.588 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.154 0.846 44 H 0.132 0.868 45 H 0.285 0.715 46 H 0.110 0.890 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 23.537 15.565 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.117 4.117 5 C -0.138 4.138 6 H 0.116 0.884 7 C -0.177 4.177 8 C -0.216 4.216 9 H 0.163 0.837 10 C 0.325 3.675 11 O -0.469 6.469 12 N -0.363 5.363 13 C 0.059 3.941 14 C -0.175 4.175 15 C -0.064 4.064 16 C -0.210 4.210 17 C 0.080 3.920 18 O -0.148 6.148 19 C -0.477 4.477 20 H 0.100 0.900 21 C -0.188 4.188 22 N -0.561 5.561 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.187 1.187 27 C -0.257 4.257 28 C -0.069 4.069 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.146 0.854 39 H 0.105 0.895 40 H 0.249 0.751 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.171 0.829 44 H 0.150 0.850 45 H 0.095 0.905 46 H 0.128 0.872 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.682 23.269 15.700 28.458 hybrid contribution 0.460 -0.884 -0.948 1.375 sum -4.222 22.385 14.752 27.139 Atomic orbital electron populations 1.21908 0.95799 1.01336 1.01777 1.21068 0.95494 0.96538 0.98130 1.21826 1.01285 0.95230 1.01960 1.21273 1.01416 0.90687 0.98335 1.22490 1.00007 0.93212 0.98061 0.88357 1.23187 0.97733 1.01021 0.95795 1.22360 1.02975 1.00468 0.95798 0.83686 1.20217 0.85883 0.81927 0.79448 1.90665 1.30835 1.72582 1.52784 1.46108 1.26483 1.33375 1.30285 1.19903 0.92076 0.88475 0.93654 1.19527 1.04375 0.99138 0.94446 1.20948 0.96953 0.98276 0.90189 1.20521 1.03491 0.96304 1.00709 1.19735 0.93848 0.91848 0.86610 1.83524 1.55844 1.44571 1.30907 1.20710 1.20071 1.10771 0.96137 0.89978 1.25289 0.94855 0.95087 1.03552 1.69726 1.28954 1.23251 1.34148 0.85218 0.79708 0.78353 0.77454 1.18957 1.19371 1.18657 1.21271 1.07483 1.04189 0.92779 1.20910 0.94622 0.93829 0.97544 0.92813 0.93536 0.92411 0.91179 0.92473 0.92055 0.92628 0.91329 0.90129 0.85442 0.89467 0.75146 0.91608 0.90665 0.82882 0.85004 0.90528 0.87223 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.01 71.98 0.65 -1.33 16 2 C -0.09 -1.05 2.92 -10.79 -0.03 -1.08 16 3 C -0.15 -1.31 9.19 71.98 0.66 -0.65 16 4 C -0.08 -0.90 4.96 30.60 0.15 -0.75 16 5 C -0.12 -1.86 5.04 -10.79 -0.05 -1.91 16 6 H 0.10 2.01 5.91 -2.39 -0.01 1.99 16 7 C -0.14 -1.96 9.88 30.59 0.30 -1.66 16 8 C -0.20 -3.17 5.91 -11.54 -0.07 -3.24 16 9 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 10 C 0.54 12.52 7.61 87.66 0.67 13.19 16 11 O -0.59 -18.38 16.26 -3.03 -0.05 -18.43 16 12 N -0.71 -15.04 5.55 -466.80 -2.59 -17.63 16 13 C 0.18 4.32 5.80 85.63 0.50 4.81 16 14 C -0.17 -4.76 5.25 -19.83 -0.10 -4.87 16 15 C -0.05 -1.25 9.69 22.25 0.22 -1.04 16 16 C -0.19 -6.72 9.99 22.39 0.22 -6.50 16 17 C 0.13 5.72 6.65 22.58 0.15 5.87 16 18 O -0.24 -12.64 8.59 -22.75 -0.20 -12.84 16 19 C -0.40 -22.97 9.95 67.92 0.68 -22.29 16 20 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 21 C 0.01 0.62 5.49 84.83 0.47 1.09 16 22 N -0.92 -53.93 13.96 21.61 0.30 -53.63 16 23 Si 0.97 44.28 28.62 68.60 1.96 46.24 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 27 C -0.24 -9.88 9.17 22.39 0.21 -9.67 16 28 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.74 6.41 -2.39 -0.02 0.72 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.70 7.87 -2.39 -0.02 0.68 16 38 H 0.13 1.18 8.03 -2.39 -0.02 1.16 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.41 7.35 8.46 -92.71 -0.78 6.57 16 41 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 42 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 43 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.29 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.11 5.07 5.64 -2.91 -0.02 5.06 16 47 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -67.63 390.18 4.43 -63.19 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.18 Total: 24.52 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 4.82 Total: -31.43 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -2.29 Total: -71.26 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.24 Total: -31.26 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.96 Total: 46.24 kcal Total: -67.63 4.43 -63.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823046141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.557 kcal (2) G-P(sol) polarization free energy of solvation -67.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds