Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.46890 * 2 1 4 4 C 1.35971 * 116.99941 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.98242 * 0.22955 * 4 3 2 6 6 C 1.38080 * 120.01403 * 180.23557 * 5 4 3 7 7 C 1.38869 * 119.98519 * 359.51202 * 6 5 4 8 8 N 1.40016 * 120.01923 * 180.27929 * 7 6 5 9 9 C 1.46495 * 120.00175 * 276.95467 * 8 7 6 10 10 C 1.50704 * 109.47113 * 89.99979 * 9 8 7 11 11 H 1.07997 * 119.99938 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99657 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99680 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00154 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47121 * 90.00483 * 14 12 10 16 16 H 1.48507 * 109.47096 * 209.99747 * 14 12 10 17 17 H 1.48495 * 109.47254 * 330.00024 * 14 12 10 18 18 C 1.34779 * 120.00087 * 96.95338 * 8 7 6 19 19 O 1.21626 * 120.00002 * 4.74597 * 18 8 7 20 20 C 1.47065 * 119.99883 * 184.74141 * 18 8 7 21 21 C 1.33020 * 119.99954 * 186.30623 * 20 18 8 22 22 C 1.50702 * 120.00076 * 188.13277 * 21 20 18 23 23 C 1.50698 * 120.00111 * 8.12679 * 21 20 18 24 24 C 1.52999 * 109.47202 * 269.32316 * 23 21 20 25 25 C 1.38867 * 119.96412 * 0.25461 * 7 6 5 26 26 C 1.38084 * 119.98252 * 0.02562 * 25 7 6 27 27 H 1.09007 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47810 * 299.99785 * 1 2 3 29 29 H 1.09004 * 109.47439 * 60.00251 * 1 2 3 30 30 H 1.09005 * 109.47642 * 239.99857 * 2 1 3 31 31 H 1.09004 * 109.47439 * 119.99749 * 2 1 3 32 32 H 1.08000 * 119.99264 * 0.02562 * 5 4 3 33 33 H 1.08007 * 120.00891 * 179.79316 * 6 5 4 34 34 H 1.08994 * 109.47610 * 209.99953 * 9 8 7 35 35 H 1.09003 * 109.47176 * 330.00348 * 9 8 7 36 36 H 0.97000 * 120.00080 * 179.97438 * 13 12 10 37 37 H 1.08000 * 120.00345 * 6.30924 * 20 18 8 38 38 H 1.08995 * 109.47611 * 89.99575 * 22 21 20 39 39 H 1.08998 * 109.46867 * 210.00087 * 22 21 20 40 40 H 1.09008 * 109.47018 * 329.99520 * 22 21 20 41 41 H 1.09004 * 109.46585 * 29.32063 * 23 21 20 42 42 H 1.08997 * 109.47083 * 149.31907 * 23 21 20 43 43 H 1.09004 * 109.47144 * 299.99405 * 24 23 21 44 44 H 1.08997 * 109.47436 * 59.99807 * 24 23 21 45 45 H 1.09002 * 109.47094 * 179.97438 * 24 23 21 46 46 H 1.08004 * 120.01096 * 180.02562 * 25 7 6 47 47 H 1.08001 * 119.99199 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1990 0.4252 -0.0059 6 6 5.5680 0.6053 -0.0015 7 6 6.0991 1.8884 -0.0020 8 7 7.4872 2.0720 -0.0035 9 6 8.2349 2.0156 1.2550 10 6 8.6759 0.5981 1.5143 11 1 8.4241 -0.1828 0.8120 12 6 9.4001 0.2980 2.6486 13 7 9.7846 -0.9391 2.8751 14 14 9.8351 1.6485 3.8635 15 1 8.7599 1.7638 4.8814 16 1 11.1179 1.3168 4.5341 17 1 9.9733 2.9385 3.1411 18 6 8.1355 2.3004 -1.1628 19 8 7.5066 2.4331 -2.1954 20 6 9.6034 2.3893 -1.1793 21 6 10.2361 2.7384 -2.2961 22 6 11.7389 2.6531 -2.3689 23 6 9.4501 3.2190 -3.4887 24 6 9.0984 2.0274 -4.3816 25 6 5.2528 2.9894 -0.0016 26 6 3.8840 2.8076 -0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7858 -0.5727 -0.0100 33 1 6.2256 -0.2515 -0.0023 34 1 9.1101 2.6617 1.1870 35 1 7.5970 2.3528 2.0720 36 1 10.2944 -1.1502 3.6729 37 1 10.1677 2.1712 -0.2846 38 1 12.0299 1.6662 -2.7288 39 1 12.1133 3.4144 -3.0532 40 1 12.1606 2.8170 -1.3771 41 1 8.5336 3.7016 -3.1491 42 1 10.0486 3.9329 -4.0545 43 1 10.0150 1.5448 -4.7211 44 1 8.5000 1.3134 -3.8158 45 1 8.5295 2.3750 -5.2439 46 1 5.6651 3.9877 -0.0024 47 1 3.2257 3.6638 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823080535.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = -30.293559 kcal Electronic energy + Delta-G solvation = -26804.684779 eV Core-core repulsion = 23146.451432 eV Total energy + Delta-G solvation = -3658.233347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18829 -39.34734 -37.41734 -35.56362 -34.71068 -32.55556 -31.80786 -30.64238 -30.53613 -29.15073 -27.84821 -26.91197 -24.02676 -23.49692 -22.52920 -22.25790 -21.60218 -19.69635 -18.08141 -17.45339 -17.05971 -16.80541 -16.05726 -15.90833 -15.69756 -14.54981 -14.42933 -14.17307 -14.05394 -13.79920 -13.38095 -13.26797 -13.15131 -13.07058 -12.76936 -12.65383 -12.52070 -12.32941 -12.18716 -11.99592 -11.78869 -11.70500 -11.69535 -11.56864 -11.12111 -10.81647 -10.70584 -10.64176 -10.51705 -10.29617 -10.23950 -9.61410 -8.91321 -8.72651 -8.65674 -8.62390 -7.93087 -7.68884 -6.22680 -4.23860 1.68028 1.75322 1.88359 3.17270 3.24539 3.26318 3.29296 3.77988 3.93642 4.09463 4.25650 4.84368 4.88491 5.08007 5.11253 5.12458 5.17145 5.19531 5.25787 5.40621 5.53535 5.66936 5.69170 5.71662 5.72486 5.76921 5.87590 5.89854 5.93328 5.97106 5.99614 6.15740 6.19404 6.26360 6.35886 6.53016 6.60237 6.62532 6.67778 6.72391 6.93218 6.95557 6.99584 7.04370 7.42006 7.48006 7.70969 8.09023 8.38301 8.81187 8.97134 9.36480 10.89828 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.004726 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.108833 B = 5923.394547 C = 8150.867893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.320 6.320 4 C 0.119 3.881 5 C -0.202 4.202 6 C -0.058 4.058 7 C 0.130 3.870 8 N -0.553 5.553 9 C 0.211 3.789 10 C -0.537 4.537 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.890 5.890 14 Si 0.869 3.131 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.263 1.263 18 C 0.552 3.448 19 O -0.550 6.550 20 C -0.200 4.200 21 C -0.059 4.059 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.130 4.130 25 C -0.075 4.075 26 C -0.150 4.150 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.139 0.861 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.125 0.875 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 5.458 -7.076 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.235 6.235 4 C 0.075 3.925 5 C -0.222 4.222 6 C -0.077 4.077 7 C 0.040 3.960 8 N -0.281 5.281 9 C 0.091 3.909 10 C -0.576 4.576 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.528 5.528 14 Si 0.695 3.305 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.188 1.188 18 C 0.345 3.655 19 O -0.431 6.431 20 C -0.221 4.221 21 C -0.061 4.061 22 C -0.176 4.176 23 C -0.132 4.132 24 C -0.188 4.188 25 C -0.095 4.095 26 C -0.169 4.169 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.143 0.857 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.282 5.542 -7.442 12.437 hybrid contribution 0.544 0.095 1.104 1.234 sum -7.738 5.637 -6.338 11.481 Atomic orbital electron populations 1.21763 0.93065 1.02629 1.03304 1.22739 0.95505 0.82403 1.01543 1.86030 1.19405 1.28908 1.89135 1.18917 0.81826 0.94165 0.97623 1.21078 0.93866 0.97801 1.09428 1.21307 0.94186 0.97478 0.94774 1.17386 0.83661 0.92325 1.02661 1.45390 1.04129 1.69811 1.08764 1.19917 0.91591 0.98718 0.80693 1.21350 1.35230 0.92686 1.08285 0.90309 1.24847 0.95113 0.95289 0.97362 1.69885 1.37482 1.18078 1.27337 0.86961 0.78567 0.82811 0.82133 1.19902 1.20851 1.18785 1.18552 0.88277 0.76191 0.82446 1.90662 1.69409 1.51228 1.31815 1.22654 0.93591 1.06063 0.99778 1.22419 0.95613 0.93448 0.94583 1.20911 0.91686 1.02284 1.02718 1.20879 1.00249 0.98084 0.93970 1.21530 1.00232 0.98423 0.98566 1.21077 0.92063 0.98633 0.97711 1.20134 0.94476 0.94583 1.07692 0.90563 0.91638 0.91685 0.92114 0.91993 0.85638 0.84901 0.94252 0.95213 0.92381 0.84375 0.90691 0.91871 0.91273 0.88461 0.93012 0.94121 0.91479 0.93388 0.85675 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.88 16 2 C 0.05 0.59 5.46 37.15 0.20 0.79 16 3 O -0.32 -4.62 10.14 -19.65 -0.20 -4.82 16 4 C 0.12 1.93 6.69 -39.22 -0.26 1.66 16 5 C -0.20 -3.37 9.03 -39.46 -0.36 -3.72 16 6 C -0.06 -1.13 9.96 -39.41 -0.39 -1.52 16 7 C 0.13 2.61 4.46 -83.65 -0.37 2.24 16 8 N -0.55 -11.72 2.48 -116.03 -0.29 -12.01 16 9 C 0.21 4.74 3.82 -5.19 -0.02 4.72 16 10 C -0.54 -14.00 9.80 -34.44 -0.34 -14.34 16 11 H 0.08 2.28 7.85 -52.49 -0.41 1.87 16 12 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.89 -25.57 13.96 55.43 0.77 -24.79 16 14 Si 0.87 19.75 27.47 -169.99 -4.67 15.08 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 18 C 0.55 11.46 7.42 -12.68 -0.09 11.36 16 19 O -0.55 -11.75 11.46 5.25 0.06 -11.69 16 20 C -0.20 -3.77 8.69 -37.81 -0.33 -4.09 16 21 C -0.06 -0.94 5.36 -101.16 -0.54 -1.48 16 22 C -0.12 -1.53 10.05 36.01 0.36 -1.16 16 23 C -0.09 -1.46 5.33 -27.88 -0.15 -1.60 16 24 C -0.13 -1.98 9.41 37.16 0.35 -1.63 16 25 C -0.08 -1.33 9.96 -39.41 -0.39 -1.72 16 26 C -0.15 -2.40 9.98 -39.46 -0.39 -2.79 16 27 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 31 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 32 H 0.13 1.77 6.29 -52.49 -0.33 1.44 16 33 H 0.13 2.75 7.85 -52.48 -0.41 2.33 16 34 H 0.04 0.86 5.47 -51.93 -0.28 0.57 16 35 H 0.03 0.67 7.48 -51.93 -0.39 0.28 16 36 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.14 2.70 6.37 -52.49 -0.33 2.37 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.67 8.04 -51.93 -0.42 0.26 16 40 H 0.07 0.86 8.06 -51.92 -0.42 0.44 16 41 H 0.10 1.70 5.74 -51.93 -0.30 1.40 16 42 H 0.05 0.67 8.04 -51.93 -0.42 0.25 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.21 6.67 -51.93 -0.35 0.86 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 47 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -29.86 383.90 -8.38 -38.24 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.40 Total: 6.41 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.44 Total: -12.20 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.49 Total: -36.80 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.14 Total: -16.51 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.86 -8.38 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823080535.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.945 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds