Wall clock time and date at job start Tue Mar 31 2020 12:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.46890 * 2 1 4 4 C 1.35971 * 116.99941 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.98242 * 0.22955 * 4 3 2 6 6 C 1.38080 * 120.01403 * 180.23557 * 5 4 3 7 7 C 1.38869 * 119.98519 * 359.51202 * 6 5 4 8 8 N 1.40016 * 120.01923 * 180.27929 * 7 6 5 9 9 C 1.46495 * 120.00175 * 276.95467 * 8 7 6 10 10 C 1.50704 * 109.47113 * 89.99979 * 9 8 7 11 11 H 1.07997 * 119.99938 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99657 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99680 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00154 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47121 * 90.00483 * 14 12 10 16 16 H 1.48507 * 109.47096 * 209.99747 * 14 12 10 17 17 H 1.48495 * 109.47254 * 330.00024 * 14 12 10 18 18 C 1.34779 * 120.00087 * 96.95338 * 8 7 6 19 19 O 1.21626 * 120.00002 * 4.74597 * 18 8 7 20 20 C 1.47065 * 119.99883 * 184.74141 * 18 8 7 21 21 C 1.33020 * 119.99954 * 186.30623 * 20 18 8 22 22 C 1.50702 * 120.00076 * 188.13277 * 21 20 18 23 23 C 1.50698 * 120.00111 * 8.12679 * 21 20 18 24 24 C 1.52999 * 109.47202 * 269.32316 * 23 21 20 25 25 C 1.38867 * 119.96412 * 0.25461 * 7 6 5 26 26 C 1.38084 * 119.98252 * 0.02562 * 25 7 6 27 27 H 1.09007 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47810 * 299.99785 * 1 2 3 29 29 H 1.09004 * 109.47439 * 60.00251 * 1 2 3 30 30 H 1.09005 * 109.47642 * 239.99857 * 2 1 3 31 31 H 1.09004 * 109.47439 * 119.99749 * 2 1 3 32 32 H 1.08000 * 119.99264 * 0.02562 * 5 4 3 33 33 H 1.08007 * 120.00891 * 179.79316 * 6 5 4 34 34 H 1.08994 * 109.47610 * 209.99953 * 9 8 7 35 35 H 1.09003 * 109.47176 * 330.00348 * 9 8 7 36 36 H 0.97000 * 120.00080 * 179.97438 * 13 12 10 37 37 H 1.08000 * 120.00345 * 6.30924 * 20 18 8 38 38 H 1.08995 * 109.47611 * 89.99575 * 22 21 20 39 39 H 1.08998 * 109.46867 * 210.00087 * 22 21 20 40 40 H 1.09008 * 109.47018 * 329.99520 * 22 21 20 41 41 H 1.09004 * 109.46585 * 29.32063 * 23 21 20 42 42 H 1.08997 * 109.47083 * 149.31907 * 23 21 20 43 43 H 1.09004 * 109.47144 * 299.99405 * 24 23 21 44 44 H 1.08997 * 109.47436 * 59.99807 * 24 23 21 45 45 H 1.09002 * 109.47094 * 179.97438 * 24 23 21 46 46 H 1.08004 * 120.01096 * 180.02562 * 25 7 6 47 47 H 1.08001 * 119.99199 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 4.1990 0.4252 -0.0059 6 6 5.5680 0.6053 -0.0015 7 6 6.0991 1.8884 -0.0020 8 7 7.4872 2.0720 -0.0035 9 6 8.2349 2.0156 1.2550 10 6 8.6759 0.5981 1.5143 11 1 8.4241 -0.1828 0.8120 12 6 9.4001 0.2980 2.6486 13 7 9.7846 -0.9391 2.8751 14 14 9.8351 1.6485 3.8635 15 1 8.7599 1.7638 4.8814 16 1 11.1179 1.3168 4.5341 17 1 9.9733 2.9385 3.1411 18 6 8.1355 2.3004 -1.1628 19 8 7.5066 2.4331 -2.1954 20 6 9.6034 2.3893 -1.1793 21 6 10.2361 2.7384 -2.2961 22 6 11.7389 2.6531 -2.3689 23 6 9.4501 3.2190 -3.4887 24 6 9.0984 2.0274 -4.3816 25 6 5.2528 2.9894 -0.0016 26 6 3.8840 2.8076 -0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7858 -0.5727 -0.0100 33 1 6.2256 -0.2515 -0.0023 34 1 9.1101 2.6617 1.1870 35 1 7.5970 2.3528 2.0720 36 1 10.2944 -1.1502 3.6729 37 1 10.1677 2.1712 -0.2846 38 1 12.0299 1.6662 -2.7288 39 1 12.1133 3.4144 -3.0532 40 1 12.1606 2.8170 -1.3771 41 1 8.5336 3.7016 -3.1491 42 1 10.0486 3.9329 -4.0545 43 1 10.0150 1.5448 -4.7211 44 1 8.5000 1.3134 -3.8158 45 1 8.5295 2.3750 -5.2439 46 1 5.6651 3.9877 -0.0024 47 1 3.2257 3.6638 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823080535.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:39 Heat of formation + Delta-G solvation = -45.461531 kcal Electronic energy + Delta-G solvation = -26805.342512 eV Core-core repulsion = 23146.451432 eV Total energy + Delta-G solvation = -3658.891080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.61264 -40.68802 -38.74136 -36.91680 -36.30761 -34.51177 -32.80015 -31.98489 -31.77135 -30.64478 -29.44324 -28.28232 -25.09058 -24.81168 -24.38806 -23.62750 -22.76580 -21.09607 -19.31546 -19.05355 -18.90484 -18.32129 -17.50306 -17.06024 -17.02886 -16.23965 -15.84730 -15.58131 -15.37035 -15.28871 -14.69227 -14.48541 -14.44099 -14.31791 -14.24482 -13.97474 -13.81558 -13.67186 -13.41608 -13.28566 -13.19902 -12.95191 -12.80110 -12.73472 -12.69341 -12.48541 -12.12015 -11.89077 -11.84569 -11.63516 -11.62459 -11.58350 -10.81636 -10.41495 -10.03553 -10.01350 -9.53506 -9.07814 -8.30377 -6.36852 0.30734 0.34477 0.48096 1.38130 1.38944 1.48702 2.16589 2.27729 2.32957 2.41395 2.69612 3.03395 3.80126 3.82747 3.86560 3.90119 4.05529 4.17120 4.26896 4.29092 4.36150 4.38031 4.52367 4.56232 4.59016 4.61360 4.67889 4.74163 4.82851 4.84029 4.84981 4.95341 4.95372 5.03033 5.05674 5.10633 5.19342 5.29755 5.31677 5.39606 5.43359 5.55413 5.62177 5.63369 5.70412 6.00744 6.20764 6.41970 6.58809 6.67736 7.25161 7.40423 8.85797 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.004726 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.108833 B = 5923.394547 C = 8150.867893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.323 6.323 4 C 0.125 3.875 5 C -0.200 4.200 6 C -0.082 4.082 7 C 0.098 3.902 8 N -0.559 5.559 9 C 0.222 3.778 10 C -0.533 4.533 11 H 0.031 0.969 12 C 0.022 3.978 13 N -0.940 5.940 14 Si 0.937 3.063 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.238 1.238 18 C 0.545 3.455 19 O -0.564 6.564 20 C -0.242 4.242 21 C -0.029 4.029 22 C -0.121 4.121 23 C -0.096 4.096 24 C -0.126 4.126 25 C -0.077 4.077 26 C -0.144 4.144 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.268 0.732 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.061 0.939 46 H 0.138 0.862 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 7.724 -7.628 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.237 6.237 4 C 0.079 3.921 5 C -0.219 4.219 6 C -0.102 4.102 7 C 0.008 3.992 8 N -0.286 5.286 9 C 0.101 3.899 10 C -0.571 4.571 11 H 0.049 0.951 12 C -0.177 4.177 13 N -0.580 5.580 14 Si 0.759 3.241 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.161 1.161 18 C 0.340 3.660 19 O -0.446 6.446 20 C -0.263 4.263 21 C -0.031 4.031 22 C -0.177 4.177 23 C -0.133 4.133 24 C -0.183 4.183 25 C -0.097 4.097 26 C -0.162 4.162 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.156 0.844 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.719 7.815 -8.013 14.188 hybrid contribution 0.571 -0.714 1.116 1.443 sum -8.149 7.102 -6.896 12.822 Atomic orbital electron populations 1.21787 0.90775 1.04214 1.03431 1.23096 0.97339 0.80913 1.02045 1.86051 1.17942 1.31099 1.88626 1.19006 0.82708 0.93968 0.96407 1.21223 0.92691 0.99358 1.08618 1.21204 0.95245 0.96651 0.97106 1.17704 0.83541 0.93264 1.04739 1.45377 1.04773 1.70053 1.08410 1.19693 0.92196 0.96319 0.81681 1.21430 1.34867 0.93562 1.07286 0.95084 1.25716 0.94887 0.97714 0.99355 1.70042 1.38950 1.20643 1.28355 0.85872 0.78218 0.80520 0.79442 1.19411 1.20585 1.16073 1.18937 0.89153 0.75792 0.82158 1.90639 1.69932 1.52149 1.31913 1.22521 0.92484 1.10356 1.00904 1.22893 0.97547 0.89268 0.93385 1.21032 0.88922 1.03810 1.03936 1.20907 0.99836 0.98620 0.93952 1.21472 1.00760 0.97647 0.98452 1.21204 0.92568 0.98388 0.97492 1.20457 0.94138 0.95626 1.06028 0.88264 0.91549 0.91502 0.91530 0.91614 0.83629 0.87866 0.92925 0.94755 0.92275 0.85674 0.89790 0.88727 0.90949 0.90733 0.89456 0.92149 0.95140 0.91991 0.84411 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16 2 C 0.04 0.83 5.46 71.98 0.39 1.22 16 3 O -0.32 -8.74 10.14 -93.22 -0.95 -9.68 16 4 C 0.12 3.90 6.69 22.50 0.15 4.05 16 5 C -0.20 -6.76 9.03 22.35 0.20 -6.56 16 6 C -0.08 -3.41 9.96 22.38 0.22 -3.19 16 7 C 0.10 4.07 4.46 38.14 0.17 4.24 16 8 N -0.56 -24.72 2.48 -639.26 -1.59 -26.31 16 9 C 0.22 10.23 3.82 85.64 0.33 10.56 16 10 C -0.53 -29.24 9.80 25.60 0.25 -28.98 16 11 H 0.03 1.95 7.85 -2.91 -0.02 1.93 16 12 C 0.02 1.22 5.47 84.66 0.46 1.68 16 13 N -0.94 -56.26 13.96 21.45 0.30 -55.96 16 14 Si 0.94 40.84 27.47 68.60 1.88 42.72 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 18 C 0.55 23.55 7.42 86.56 0.64 24.20 16 19 O -0.56 -25.00 11.46 -4.11 -0.05 -25.05 16 20 C -0.24 -9.30 8.69 23.42 0.20 -9.10 16 21 C -0.03 -0.90 5.36 -17.61 -0.09 -0.99 16 22 C -0.12 -2.76 10.05 71.24 0.72 -2.05 16 23 C -0.10 -2.80 5.33 29.85 0.16 -2.64 16 24 C -0.13 -3.70 9.41 71.98 0.68 -3.02 16 25 C -0.08 -2.72 9.96 22.38 0.22 -2.49 16 26 C -0.14 -4.41 9.98 22.35 0.22 -4.19 16 27 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.28 7.65 -2.38 -0.02 1.26 16 31 H 0.07 1.29 7.67 -2.39 -0.02 1.28 16 32 H 0.15 4.15 6.29 -2.91 -0.02 4.13 16 33 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 34 H 0.05 2.29 5.47 -2.39 -0.01 2.28 16 35 H 0.03 1.55 7.48 -2.39 -0.02 1.53 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.13 5.06 6.37 -2.91 -0.02 5.04 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.61 8.04 -2.39 -0.02 1.59 16 40 H 0.07 1.65 8.06 -2.38 -0.02 1.63 16 41 H 0.07 2.57 5.74 -2.38 -0.01 2.56 16 42 H 0.09 1.94 8.04 -2.39 -0.02 1.93 16 43 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.03 1.11 6.67 -2.39 -0.02 1.09 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 47 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -68.70 383.90 6.17 -62.53 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.89 Total: 30.36 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 5.67 Total: -18.61 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -1.29 Total: -82.27 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.99 Total: -34.73 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.88 Total: 42.72 kcal Total: -68.70 6.17 -62.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823080535.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.067 kcal (2) G-P(sol) polarization free energy of solvation -68.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds