Wall clock time and date at job start Tue Mar 31 2020 11:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47214 * 2 1 4 4 C 1.53003 * 109.46908 * 120.00395 * 2 1 3 5 5 C 1.52994 * 109.47649 * 64.99493 * 4 2 1 6 6 N 1.46492 * 109.47590 * 179.97438 * 5 4 2 7 7 C 1.46501 * 120.00234 * 270.00500 * 6 5 4 8 8 C 1.50697 * 109.47108 * 269.99822 * 7 6 5 9 9 H 1.08005 * 120.00066 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00258 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99907 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00300 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46918 * 89.99775 * 12 10 8 14 14 H 1.48492 * 109.47386 * 209.99927 * 12 10 8 15 15 H 1.48501 * 109.46685 * 330.00183 * 12 10 8 16 16 C 1.38981 * 120.00223 * 89.99889 * 6 5 4 17 17 C 1.39581 * 120.05034 * 5.00419 * 16 6 5 18 18 C 1.38328 * 118.00216 * 180.02562 * 17 16 6 19 19 C 1.39882 * 117.96631 * 0.02562 * 18 17 16 20 20 C 1.48403 * 120.08971 * 180.02562 * 19 18 17 21 21 N 1.34062 * 126.68070 * 359.97438 * 20 19 18 22 22 N 1.28984 * 107.26929 * 179.73799 * 21 20 19 23 23 N 1.28733 * 108.94881 * 0.43021 * 22 21 20 24 24 H 0.97001 * 125.34363 * 179.83155 * 23 22 21 25 25 N 1.28874 * 109.31714 * 359.55875 * 23 22 21 26 26 N 1.32552 * 119.81176 * 0.27061 * 19 18 17 27 27 N 1.28355 * 122.14042 * 359.42952 * 26 19 18 28 28 H 1.08994 * 109.47139 * 59.99647 * 1 2 3 29 29 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46844 * 300.00112 * 1 2 3 31 31 H 1.09000 * 109.46976 * 239.99473 * 2 1 3 32 32 H 1.09005 * 109.47059 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47340 * 300.00019 * 3 2 1 34 34 H 1.09006 * 109.47307 * 60.00171 * 3 2 1 35 35 H 1.09010 * 109.46916 * 304.99439 * 4 2 1 36 36 H 1.09004 * 109.47021 * 184.99735 * 4 2 1 37 37 H 1.09004 * 109.47094 * 59.99569 * 5 4 2 38 38 H 1.09004 * 109.47107 * 300.00190 * 5 4 2 39 39 H 1.09003 * 109.46986 * 29.99125 * 7 6 5 40 40 H 1.08997 * 109.47575 * 149.99713 * 7 6 5 41 41 H 0.97001 * 119.99898 * 180.02562 * 11 10 8 42 42 H 1.07995 * 121.00133 * 359.97438 * 17 16 6 43 43 H 1.07993 * 121.01646 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1240 -2.8863 2.3838 7 6 3.4522 -3.5043 2.3813 8 6 3.3413 -4.9314 1.9100 9 1 2.3777 -5.3376 1.6397 10 6 4.4700 -5.7186 1.8237 11 7 5.6434 -5.2239 2.1522 12 14 4.3325 -7.4878 1.2401 13 1 4.4885 -7.5357 -0.2359 14 1 5.3973 -8.3034 1.8772 15 1 3.0020 -8.0306 1.6151 16 6 1.3277 -2.9553 3.5208 17 6 0.0233 -2.4592 3.4918 18 6 -0.7316 -2.5491 4.6475 19 6 -0.1402 -3.1312 5.7736 20 6 -0.9074 -3.2520 7.0382 21 7 -2.1687 -2.8505 7.2512 22 7 -2.4617 -3.1407 8.4733 23 7 -1.4401 -3.6936 9.0281 24 1 -1.3996 -4.0041 9.9462 25 7 -0.4814 -3.7751 8.1708 26 7 1.1089 -3.5700 5.7095 27 7 1.8061 -3.4908 4.6347 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1263 -0.6445 1.2951 37 1 2.0697 -2.6551 0.3002 38 1 0.5488 -2.2724 1.1421 39 1 4.1094 -2.9504 1.7109 40 1 3.8635 -3.4859 3.3905 41 1 6.4375 -5.7777 2.0912 42 1 -0.3841 -2.0178 2.5943 43 1 -1.7461 -2.1804 4.6795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824249201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:12 Heat of formation + Delta-G solvation = 177.399788 kcal Electronic energy + Delta-G solvation = -25976.235632 eV Core-core repulsion = 22288.053703 eV Total energy + Delta-G solvation = -3688.181929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.38878 -40.47769 -37.68859 -35.67144 -34.42967 -33.52246 -32.95398 -32.24343 -30.73094 -29.19014 -27.20890 -26.82660 -25.39504 -24.56171 -23.78861 -23.12982 -22.16110 -20.84113 -19.92299 -19.20753 -17.28707 -17.09987 -16.94561 -16.50470 -16.05396 -15.21850 -14.91136 -14.59124 -14.17819 -14.10798 -13.91624 -13.66394 -13.36751 -12.96161 -12.75543 -12.44269 -12.32784 -12.25326 -11.87808 -11.47496 -11.31995 -11.25386 -11.21491 -11.09252 -10.99127 -10.92913 -10.76494 -10.67823 -10.58193 -10.43043 -10.11424 -10.04561 -9.77311 -9.29062 -8.99916 -8.46384 -7.12388 -6.06645 -4.13409 0.93872 1.26772 1.31591 2.26402 2.50223 3.28084 3.34094 3.35925 3.41779 3.71263 4.16979 4.18107 4.41579 4.83570 4.89220 4.93130 4.97062 5.03646 5.09600 5.21386 5.27102 5.34512 5.40983 5.53563 5.55334 5.61981 5.70455 5.76215 5.80428 5.87397 6.00174 6.05388 6.11059 6.19579 6.25122 6.32063 6.39153 6.42176 6.47543 6.94716 7.37058 7.72181 7.91813 8.01810 8.16362 8.18936 8.89113 9.36900 9.51758 10.99633 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.004439 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.331879 B = 6305.536606 C = 9168.995386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.134 4.134 5 C 0.118 3.882 6 N -0.563 5.563 7 C 0.247 3.753 8 C -0.529 4.529 9 H 0.056 0.944 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.284 1.284 15 H -0.275 1.275 16 C 0.368 3.632 17 C -0.200 4.200 18 C -0.040 4.040 19 C 0.038 3.962 20 C 0.251 3.749 21 N -0.270 5.270 22 N -0.057 5.057 23 N -0.233 5.233 24 H 0.474 0.526 25 N -0.270 5.270 26 N -0.153 5.153 27 N -0.276 5.276 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.264 0.736 42 H 0.147 0.853 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.244 10.012 3.029 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.172 4.172 5 C -0.006 4.006 6 N -0.268 5.268 7 C 0.128 3.872 8 C -0.568 4.568 9 H 0.075 0.925 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.724 3.276 13 H -0.207 1.207 14 H -0.210 1.210 15 H -0.200 1.200 16 C 0.125 3.875 17 C -0.234 4.234 18 C -0.070 4.070 19 C -0.113 4.113 20 C -0.031 4.031 21 N -0.145 5.145 22 N -0.053 5.053 23 N -0.079 5.079 24 H 0.328 0.672 25 N -0.122 5.122 26 N -0.001 5.001 27 N -0.131 5.131 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.165 0.835 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.115 9.342 3.899 15.788 hybrid contribution -0.771 -0.672 -0.723 1.252 sum -12.886 8.671 3.175 15.853 Atomic orbital electron populations 1.21925 0.95455 1.01856 1.01556 1.21061 0.95676 0.96130 0.98494 1.21823 1.01132 0.95987 1.01374 1.22116 1.02127 0.95349 0.97650 1.21635 0.99180 0.91455 0.88339 1.47311 1.18239 1.53258 1.07998 1.19493 0.75903 0.92256 0.99523 1.21384 0.93852 0.96546 1.45016 0.92539 1.24884 0.95127 0.98475 0.95210 1.69921 0.98422 1.36815 1.47798 0.86527 0.77936 0.84578 0.78573 1.20680 1.21015 1.19952 1.20271 0.88599 0.89101 0.89547 1.21752 0.94072 1.07488 1.00070 1.21839 1.00517 0.93763 0.90839 1.18933 0.94216 1.08387 0.89719 1.22888 0.89692 0.97876 0.92644 1.76018 1.12487 1.19861 1.06147 1.78833 1.13216 1.10535 1.02677 1.47793 1.06008 1.39014 1.15056 0.67198 1.75206 1.15458 1.21499 1.00021 1.73057 1.02553 1.07159 1.17305 1.73424 1.26239 1.18730 0.94744 0.92921 0.92373 0.92712 0.90896 0.92625 0.92938 0.92868 0.92004 0.91101 0.89365 0.91196 0.94784 0.92784 0.92634 0.83520 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.95 37.16 0.33 -1.02 16 2 C -0.09 -0.98 2.92 -90.62 -0.26 -1.24 16 3 C -0.15 -1.39 9.19 37.15 0.34 -1.05 16 4 C -0.13 -1.72 5.01 -26.73 -0.13 -1.86 16 5 C 0.12 1.77 5.02 -4.05 -0.02 1.75 16 6 N -0.56 -11.09 2.57 -175.04 -0.45 -11.54 16 7 C 0.25 6.05 5.23 -5.19 -0.03 6.02 16 8 C -0.53 -14.31 9.39 -34.44 -0.32 -14.63 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 11 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 12 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.37 7.18 7.45 -154.76 -1.15 6.03 16 17 C -0.20 -3.05 9.34 -39.05 -0.36 -3.42 16 18 C -0.04 -0.59 9.84 -38.93 -0.38 -0.97 16 19 C 0.04 0.66 6.84 -82.75 -0.57 0.10 16 20 C 0.25 3.96 8.05 -156.30 -1.26 2.71 16 21 N -0.27 -3.89 12.28 32.15 0.39 -3.50 16 22 N -0.06 -0.70 13.47 60.35 0.81 0.11 16 23 N -0.23 -2.41 7.90 60.35 0.48 -1.93 16 24 H 0.47 2.41 8.96 -340.36 -3.05 -0.64 16 25 N -0.27 -3.93 12.39 32.16 0.40 -3.53 16 26 N -0.15 -3.16 11.44 33.38 0.38 -2.78 16 27 N -0.28 -6.16 10.25 31.25 0.32 -5.84 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 38 H 0.07 0.89 4.44 -51.93 -0.23 0.66 16 39 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 40 H 0.05 1.48 7.32 -51.93 -0.38 1.10 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.15 1.76 6.13 -52.49 -0.32 1.44 16 43 H 0.15 1.73 7.94 -52.49 -0.42 1.31 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -32.66 365.88 -8.86 -41.52 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.51 Total: -3.68 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.92 Total: -5.87 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 3.07 Total: -53.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.66 -8.86 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824249201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.919 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds