Wall clock time and date at job start Tue Mar 31 2020 11:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47214 * 2 1 4 4 C 1.53003 * 109.46908 * 120.00395 * 2 1 3 5 5 C 1.52994 * 109.47649 * 64.99493 * 4 2 1 6 6 N 1.46492 * 109.47590 * 179.97438 * 5 4 2 7 7 C 1.46501 * 120.00234 * 270.00500 * 6 5 4 8 8 C 1.50697 * 109.47108 * 269.99822 * 7 6 5 9 9 H 1.08005 * 120.00066 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00258 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99907 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00300 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46918 * 89.99775 * 12 10 8 14 14 H 1.48492 * 109.47386 * 209.99927 * 12 10 8 15 15 H 1.48501 * 109.46685 * 330.00183 * 12 10 8 16 16 C 1.38981 * 120.00223 * 89.99889 * 6 5 4 17 17 C 1.39581 * 120.05034 * 5.00419 * 16 6 5 18 18 C 1.38328 * 118.00216 * 180.02562 * 17 16 6 19 19 C 1.39882 * 117.96631 * 0.02562 * 18 17 16 20 20 C 1.48403 * 120.08971 * 180.02562 * 19 18 17 21 21 N 1.34062 * 126.68070 * 359.97438 * 20 19 18 22 22 N 1.28984 * 107.26929 * 179.73799 * 21 20 19 23 23 N 1.28733 * 108.94881 * 0.43021 * 22 21 20 24 24 H 0.97001 * 125.34363 * 179.83155 * 23 22 21 25 25 N 1.28874 * 109.31714 * 359.55875 * 23 22 21 26 26 N 1.32552 * 119.81176 * 0.27061 * 19 18 17 27 27 N 1.28355 * 122.14042 * 359.42952 * 26 19 18 28 28 H 1.08994 * 109.47139 * 59.99647 * 1 2 3 29 29 H 1.09004 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46844 * 300.00112 * 1 2 3 31 31 H 1.09000 * 109.46976 * 239.99473 * 2 1 3 32 32 H 1.09005 * 109.47059 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47340 * 300.00019 * 3 2 1 34 34 H 1.09006 * 109.47307 * 60.00171 * 3 2 1 35 35 H 1.09010 * 109.46916 * 304.99439 * 4 2 1 36 36 H 1.09004 * 109.47021 * 184.99735 * 4 2 1 37 37 H 1.09004 * 109.47094 * 59.99569 * 5 4 2 38 38 H 1.09004 * 109.47107 * 300.00190 * 5 4 2 39 39 H 1.09003 * 109.46986 * 29.99125 * 7 6 5 40 40 H 1.08997 * 109.47575 * 149.99713 * 7 6 5 41 41 H 0.97001 * 119.99898 * 180.02562 * 11 10 8 42 42 H 1.07995 * 121.00133 * 359.97438 * 17 16 6 43 43 H 1.07993 * 121.01646 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1955 1.1880 6 7 2.1240 -2.8863 2.3838 7 6 3.4522 -3.5043 2.3813 8 6 3.3413 -4.9314 1.9100 9 1 2.3777 -5.3376 1.6397 10 6 4.4700 -5.7186 1.8237 11 7 5.6434 -5.2239 2.1522 12 14 4.3325 -7.4878 1.2401 13 1 4.4885 -7.5357 -0.2359 14 1 5.3973 -8.3034 1.8772 15 1 3.0020 -8.0306 1.6151 16 6 1.3277 -2.9553 3.5208 17 6 0.0233 -2.4592 3.4918 18 6 -0.7316 -2.5491 4.6475 19 6 -0.1402 -3.1312 5.7736 20 6 -0.9074 -3.2520 7.0382 21 7 -2.1687 -2.8505 7.2512 22 7 -2.4617 -3.1407 8.4733 23 7 -1.4401 -3.6936 9.0281 24 1 -1.3996 -4.0041 9.9462 25 7 -0.4814 -3.7751 8.1708 26 7 1.1089 -3.5700 5.7095 27 7 1.8061 -3.4908 4.6347 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1263 -0.6445 1.2951 37 1 2.0697 -2.6551 0.3002 38 1 0.5488 -2.2724 1.1421 39 1 4.1094 -2.9504 1.7109 40 1 3.8635 -3.4859 3.3905 41 1 6.4375 -5.7777 2.0912 42 1 -0.3841 -2.0178 2.5943 43 1 -1.7461 -2.1804 4.6795 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824249201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:11 Heat of formation + Delta-G solvation = 156.343606 kcal Electronic energy + Delta-G solvation = -25977.148697 eV Core-core repulsion = 22288.053703 eV Total energy + Delta-G solvation = -3689.094994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.45989 -41.87597 -38.93630 -36.81159 -35.55348 -34.92145 -34.63028 -33.64998 -32.01691 -30.65283 -28.47467 -27.91308 -26.63511 -25.84378 -25.30139 -24.33491 -23.55050 -22.22979 -20.80877 -20.25114 -18.80619 -18.40014 -18.28063 -18.16030 -17.44482 -16.57575 -16.25008 -16.08277 -15.53216 -15.26559 -15.02965 -14.81712 -14.45763 -14.32932 -14.25423 -13.70087 -13.43384 -13.30286 -13.10103 -12.87516 -12.80626 -12.57744 -12.50167 -12.43918 -12.32844 -12.23087 -12.15503 -11.98552 -11.90678 -11.54868 -11.45519 -11.41961 -11.19658 -10.79860 -10.60788 -10.36937 -8.69872 -8.12492 -6.31829 -0.29558 0.02354 0.18436 1.24896 1.37084 1.39409 1.40130 1.49362 2.00117 2.39152 2.50201 2.79252 3.02904 3.12054 3.64238 3.67035 3.87637 3.94061 4.03537 4.04312 4.14469 4.17460 4.29891 4.44350 4.59308 4.67716 4.78310 4.82351 4.87070 4.92028 4.95120 5.08925 5.12319 5.15930 5.20046 5.23625 5.35447 5.39582 5.54416 5.58676 5.63021 5.69002 6.07535 6.22671 6.46135 6.79222 7.10824 7.37103 7.96213 8.88163 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.004439 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.331879 B = 6305.536606 C = 9168.995386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.124 4.124 5 C 0.118 3.882 6 N -0.575 5.575 7 C 0.269 3.731 8 C -0.536 4.536 9 H 0.050 0.950 10 C 0.014 3.986 11 N -0.925 5.925 12 Si 0.959 3.041 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.276 1.276 16 C 0.348 3.652 17 C -0.177 4.177 18 C -0.030 4.030 19 C 0.046 3.954 20 C 0.232 3.768 21 N -0.274 5.274 22 N -0.048 5.048 23 N -0.201 5.201 24 H 0.495 0.505 25 N -0.286 5.286 26 N -0.194 5.194 27 N -0.334 5.334 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.266 0.734 42 H 0.187 0.813 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 10.601 2.679 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.202 4.202 4 C -0.162 4.162 5 C -0.004 4.004 6 N -0.282 5.282 7 C 0.148 3.852 8 C -0.575 4.575 9 H 0.069 0.931 10 C -0.185 4.185 11 N -0.565 5.565 12 Si 0.785 3.215 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.201 1.201 16 C 0.105 3.895 17 C -0.210 4.210 18 C -0.059 4.059 19 C -0.107 4.107 20 C -0.050 4.050 21 N -0.148 5.148 22 N -0.043 5.043 23 N -0.052 5.052 24 H 0.354 0.646 25 N -0.140 5.140 26 N -0.039 5.039 27 N -0.188 5.188 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.204 0.796 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.436 9.936 3.582 18.704 hybrid contribution 0.113 -0.812 -0.404 0.914 sum -15.324 9.124 3.178 18.115 Atomic orbital electron populations 1.21917 0.93715 1.02403 1.02558 1.21040 0.97083 0.96133 0.96725 1.21815 1.00545 0.95587 1.02272 1.22019 1.00570 0.94378 0.99280 1.21851 1.00673 0.91889 0.86032 1.47104 1.16915 1.54510 1.09717 1.18818 0.78481 0.91516 0.96435 1.21655 0.93496 0.97879 1.44462 0.93143 1.25713 0.94852 1.02530 0.95431 1.70040 0.99092 1.38322 1.49033 0.85541 0.77570 0.79626 0.78810 1.19043 1.20842 1.20089 1.20544 0.90234 0.89927 0.88821 1.22095 0.91833 1.05450 1.01657 1.22252 1.01863 0.92398 0.89373 1.19350 0.93404 1.06650 0.91277 1.22731 0.90326 0.99333 0.92565 1.76005 1.11680 1.20145 1.06957 1.78780 1.13193 1.10221 1.02110 1.47808 1.04615 1.37229 1.15529 0.64575 1.75157 1.16729 1.21620 1.00444 1.72938 1.04327 1.09336 1.17305 1.73258 1.28261 1.21103 0.96163 0.91672 0.92005 0.92026 0.91178 0.93660 0.91404 0.92564 0.91743 0.93728 0.90653 0.88121 0.96361 0.96753 0.92536 0.79609 0.79266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.95 71.98 0.64 -1.54 16 2 C -0.09 -1.73 2.92 -10.79 -0.03 -1.76 16 3 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16 4 C -0.12 -3.15 5.01 30.59 0.15 -2.99 16 5 C 0.12 3.49 5.02 86.38 0.43 3.92 16 6 N -0.58 -23.30 2.57 -707.71 -1.82 -25.12 16 7 C 0.27 13.96 5.23 85.63 0.45 14.41 16 8 C -0.54 -30.06 9.39 25.60 0.24 -29.82 16 9 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 10 C 0.01 0.80 5.46 84.65 0.46 1.26 16 11 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 12 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 C 0.35 13.71 7.45 133.14 0.99 14.70 16 17 C -0.18 -5.00 9.34 22.62 0.21 -4.79 16 18 C -0.03 -0.80 9.84 22.69 0.22 -0.58 16 19 C 0.05 1.57 6.84 42.14 0.29 1.86 16 20 C 0.23 6.99 8.05 137.35 1.11 8.09 16 21 N -0.27 -7.17 12.28 -52.21 -0.64 -7.81 16 22 N -0.05 -1.04 13.47 37.02 0.50 -0.55 16 23 N -0.20 -3.69 7.90 37.02 0.29 -3.39 16 24 H 0.50 3.77 8.96 -347.53 -3.12 0.65 16 25 N -0.29 -7.96 12.39 -52.16 -0.65 -8.61 16 26 N -0.19 -8.25 11.44 -48.31 -0.55 -8.80 16 27 N -0.33 -15.56 10.25 -55.06 -0.56 -16.12 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.86 6.56 -2.38 -0.02 0.85 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 38 H 0.10 2.30 4.44 -2.39 -0.01 2.29 16 39 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 40 H 0.01 0.85 7.32 -2.39 -0.02 0.84 16 41 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.19 3.64 6.13 -2.91 -0.02 3.62 16 43 H 0.19 3.50 7.94 -2.91 -0.02 3.48 16 Total: -1.00 -75.01 365.88 2.64 -72.37 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -2.07 Total: 5.36 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.83 Total: 0.87 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -3.15 Total: -125.43 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.01 2.64 -72.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824249201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.710 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds