Wall clock time and date at job start Tue Mar 31 2020 12:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47041 * 2 1 4 4 O 1.42894 * 109.47334 * 239.99743 * 2 1 3 5 5 C 1.52999 * 109.46795 * 119.99535 * 2 1 3 6 6 H 1.09004 * 109.49737 * 64.93785 * 5 2 1 7 7 C 1.53044 * 109.49541 * 184.99903 * 5 2 1 8 8 C 1.53047 * 109.53627 * 181.35599 * 7 5 2 9 9 C 1.53197 * 109.31039 * 298.63275 * 8 7 5 10 10 N 1.46932 * 108.77328 * 54.63891 * 9 8 7 11 11 C 1.34772 * 120.62847 * 126.37159 * 10 9 8 12 12 O 1.21592 * 119.99672 * 186.25154 * 11 10 9 13 13 C 1.47636 * 120.00251 * 6.24164 * 11 10 9 14 14 C 1.40014 * 119.90014 * 215.89149 * 13 11 10 15 15 C 1.36315 * 120.10824 * 180.02562 * 14 13 11 16 16 C 1.40882 * 119.89220 * 359.97438 * 15 14 13 17 17 C 1.41116 * 120.10043 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99640 * 211.43438 * 17 16 15 19 19 C 1.40223 * 119.99937 * 31.43593 * 17 16 15 20 20 N 1.30641 * 120.00287 * 25.14804 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 205.14773 * 19 17 16 22 22 H 1.48502 * 109.47247 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46830 * 240.00182 * 21 19 17 24 24 H 1.48495 * 109.47079 * 120.00247 * 21 19 17 25 25 C 1.40890 * 119.79496 * 0.25102 * 16 15 14 26 26 C 1.36314 * 119.88934 * 359.50709 * 25 16 15 27 27 C 1.46926 * 118.73658 * 306.64084 * 10 9 8 28 28 H 1.09004 * 109.47390 * 300.00535 * 1 2 3 29 29 H 1.09005 * 109.46885 * 59.99651 * 1 2 3 30 30 H 1.08994 * 109.47697 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46683 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47270 * 300.00076 * 3 2 1 33 33 H 1.09002 * 109.47273 * 60.00012 * 3 2 1 34 34 H 0.96695 * 114.00254 * 300.00539 * 4 2 1 35 35 H 1.08999 * 109.46240 * 61.33532 * 7 5 2 36 36 H 1.08997 * 109.44795 * 301.36537 * 7 5 2 37 37 H 1.08999 * 109.49637 * 178.68399 * 8 7 5 38 38 H 1.08994 * 109.52522 * 58.59908 * 8 7 5 39 39 H 1.08999 * 109.58563 * 294.85290 * 9 8 7 40 40 H 1.08996 * 109.58271 * 174.42331 * 9 8 7 41 41 H 1.07996 * 119.94240 * 0.03193 * 14 13 11 42 42 H 1.08006 * 120.04791 * 179.97438 * 15 14 13 43 43 H 0.97008 * 120.00056 * 6.10582 * 20 19 17 44 44 H 1.07998 * 120.05213 * 179.75645 * 25 16 15 45 45 H 1.08000 * 119.94936 * 180.25900 * 26 25 16 46 46 H 1.09006 * 109.58502 * 173.14967 * 27 10 9 47 47 H 1.09005 * 109.58651 * 293.56918 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 1.7508 -1.7713 1.2067 7 6 3.5652 -0.6136 1.3144 8 6 4.0791 -1.3634 2.5456 9 6 3.4949 -0.7234 3.8090 10 7 2.0308 -0.6917 3.6893 11 6 1.2514 -1.2195 4.6538 12 8 0.0483 -1.2899 4.4926 13 6 1.8585 -1.7124 5.9061 14 6 1.3320 -2.8454 6.5382 15 6 1.8889 -3.3039 7.6949 16 6 2.9963 -2.6360 8.2539 17 6 3.5758 -3.1065 9.4515 18 1 4.0312 -2.4108 10.1407 19 6 3.5605 -4.4773 9.7465 20 7 3.4827 -5.3527 8.7800 21 14 3.6511 -5.0515 11.5218 22 1 3.7327 -3.8719 12.4201 23 1 4.8568 -5.8985 11.7070 24 1 2.4367 -5.8408 11.8494 25 6 3.5196 -1.4936 7.6168 26 6 2.9591 -1.0455 6.4578 27 6 1.4328 -0.0790 2.4953 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.7210 -1.5952 -1.2328 35 1 3.8527 0.4356 1.3820 36 1 3.9986 -1.0517 0.4154 37 1 5.1671 -1.3062 2.5786 38 1 3.7712 -2.4075 2.4911 39 1 3.8751 0.2928 3.9130 40 1 3.7775 -1.3127 4.6812 41 1 0.4835 -3.3570 6.1086 42 1 1.4818 -4.1777 8.1819 43 1 3.5249 -5.0602 7.8560 44 1 4.3659 -0.9761 8.0438 45 1 3.3621 -0.1723 5.9664 46 1 0.3551 -0.2432 2.5011 47 1 1.6414 0.9909 2.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832472498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:21 Heat of formation + Delta-G solvation = -84.455034 kcal Electronic energy + Delta-G solvation = -27146.653912 eV Core-core repulsion = 23486.071947 eV Total energy + Delta-G solvation = -3660.581965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37350 -38.83518 -37.38062 -36.32860 -34.16207 -33.27837 -32.15625 -30.28080 -29.98995 -29.01695 -27.73648 -26.14759 -24.73832 -23.83281 -21.94610 -21.24153 -21.03833 -19.74563 -18.78563 -18.13004 -17.03543 -16.46322 -15.83269 -15.34866 -15.01401 -14.67282 -14.61245 -14.32473 -14.15949 -14.02252 -13.61960 -13.59438 -13.09002 -12.84636 -12.64981 -12.54909 -12.35311 -12.26736 -12.17268 -12.11052 -11.80672 -11.51571 -11.35271 -11.18777 -11.14703 -10.99997 -10.83162 -10.64348 -10.53139 -10.35222 -9.91970 -9.89155 -9.72297 -9.22120 -9.00830 -8.30796 -7.93048 -7.70376 -7.39927 -4.68720 2.18376 2.76487 3.05099 3.08178 3.24721 3.37201 3.65816 3.86561 3.99844 4.42517 4.47983 4.57550 4.71076 4.91234 4.99920 5.11858 5.17059 5.28296 5.29118 5.41709 5.50635 5.54811 5.59708 5.63336 5.70344 5.76841 5.82223 5.86510 5.90749 5.93369 6.01083 6.07395 6.08882 6.14991 6.20439 6.34617 6.59341 6.74470 6.86262 6.91380 7.20966 7.41006 7.45594 7.52911 7.57019 7.63773 7.94797 7.98857 8.08260 8.51156 8.63830 8.86658 9.82693 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.002816 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.824937 B = 9941.236275 C =10167.443426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.143 4.143 4 O -0.560 6.560 5 C -0.125 4.125 6 H 0.075 0.925 7 C -0.110 4.110 8 C -0.137 4.137 9 C 0.097 3.903 10 N -0.617 5.617 11 C 0.578 3.422 12 O -0.568 6.568 13 C -0.285 4.285 14 C -0.023 4.023 15 C -0.224 4.224 16 C 0.111 3.889 17 C -0.506 4.506 18 H 0.082 0.918 19 C 0.038 3.962 20 N -0.780 5.780 21 Si 1.070 2.930 22 H -0.274 1.274 23 H -0.276 1.276 24 H -0.272 1.272 25 C -0.231 4.231 26 C -0.049 4.049 27 C 0.117 3.883 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.375 0.625 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.301 0.699 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 7.492 -12.960 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.094 3.906 3 C -0.200 4.200 4 O -0.365 6.365 5 C -0.145 4.145 6 H 0.093 0.907 7 C -0.148 4.148 8 C -0.175 4.175 9 C -0.025 4.025 10 N -0.350 5.350 11 C 0.373 3.627 12 O -0.449 6.449 13 C -0.289 4.289 14 C -0.043 4.043 15 C -0.243 4.243 16 C 0.107 3.893 17 C -0.533 4.533 18 H 0.100 0.900 19 C -0.186 4.186 20 N -0.402 5.402 21 Si 0.894 3.106 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.197 1.197 25 C -0.251 4.251 26 C -0.068 4.068 27 C -0.006 4.006 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.222 0.778 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.846 6.656 -12.232 13.952 hybrid contribution -0.174 0.803 -0.967 1.269 sum 0.671 7.460 -13.199 15.176 Atomic orbital electron populations 1.22572 0.95736 1.02780 1.02913 1.21120 0.92445 0.92876 0.84162 1.21877 1.02247 0.93544 1.02328 1.86524 1.77350 1.28898 1.43764 1.22108 0.96850 1.00668 0.94859 0.90703 1.21564 0.94220 1.00822 0.98152 1.21966 1.00368 1.00330 0.94837 1.22165 0.79783 1.00952 0.99629 1.47943 1.06579 1.60464 1.20047 1.18700 0.85756 0.75176 0.83115 1.90641 1.15175 1.57822 1.81216 1.18800 1.05503 1.04930 0.99654 1.20339 0.96291 0.93649 0.93999 1.20818 0.99641 1.04675 0.99142 1.17813 0.89513 0.90880 0.91068 1.20807 1.33097 0.95531 1.03859 0.89971 1.27182 0.91305 0.93103 1.07028 1.70333 1.27131 1.38915 1.03783 0.83562 0.78317 0.76554 0.72216 1.19924 1.20168 1.19707 1.20719 1.03317 1.03084 0.97960 1.20574 0.93572 0.97112 0.95564 1.21506 0.99420 0.96050 0.83611 0.91033 0.91886 0.92194 0.91440 0.92090 0.90946 0.77797 0.91631 0.91392 0.90857 0.91595 0.92231 0.87225 0.88484 0.87636 0.88518 0.88317 0.88244 0.89006 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.33 37.16 0.31 -1.41 16 2 C 0.13 1.32 0.87 -90.62 -0.08 1.24 16 3 C -0.14 -1.30 8.12 37.16 0.30 -1.00 16 4 O -0.56 -5.57 12.49 -35.23 -0.44 -6.01 16 5 C -0.13 -1.41 1.90 -90.72 -0.17 -1.59 16 6 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.11 -1.18 4.55 -26.68 -0.12 -1.30 16 8 C -0.14 -1.64 6.08 -26.61 -0.16 -1.80 16 9 C 0.10 1.38 4.77 -3.70 -0.02 1.36 16 10 N -0.62 -10.14 2.98 -174.21 -0.52 -10.66 16 11 C 0.58 12.05 7.36 -12.43 -0.09 11.96 16 12 O -0.57 -13.35 16.25 5.28 0.09 -13.26 16 13 C -0.28 -6.30 5.28 -104.73 -0.55 -6.85 16 14 C -0.02 -0.55 9.54 -39.61 -0.38 -0.93 16 15 C -0.22 -5.52 8.00 -39.27 -0.31 -5.83 16 16 C 0.11 2.75 5.16 -106.80 -0.55 2.20 16 17 C -0.51 -12.54 8.95 -37.75 -0.34 -12.88 16 18 H 0.08 1.98 7.96 -52.49 -0.42 1.56 16 19 C 0.04 0.90 4.90 -17.31 -0.08 0.81 16 20 N -0.78 -19.55 12.52 55.56 0.70 -18.85 16 21 Si 1.07 20.31 30.00 -169.99 -5.10 15.21 16 22 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 23 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.23 -5.22 9.73 -39.27 -0.38 -5.61 16 26 C -0.05 -1.03 7.28 -39.61 -0.29 -1.31 16 27 C 0.12 1.59 4.89 -3.94 -0.02 1.57 16 28 H 0.07 0.70 6.49 -51.93 -0.34 0.36 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.62 6.38 -51.93 -0.33 0.28 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.61 6.46 -51.93 -0.34 0.28 16 34 H 0.37 2.65 9.04 45.56 0.41 3.06 16 35 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 36 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 40 H 0.11 1.78 4.53 -51.93 -0.24 1.55 16 41 H 0.10 2.23 8.00 -52.49 -0.42 1.81 16 42 H 0.11 2.68 6.93 -52.48 -0.36 2.31 16 43 H 0.30 7.75 6.96 -40.82 -0.28 7.47 16 44 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.10 1.77 6.10 -52.49 -0.32 1.45 16 46 H 0.09 1.39 5.55 -51.93 -0.29 1.10 16 47 H 0.06 0.75 6.33 -51.93 -0.33 0.42 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -28.56 361.16 -8.94 -37.50 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.16 Total: 12.00 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.94 Total: -21.36 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: 0.18 Total: -29.51 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.35 Total: -19.27 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.10 Total: 15.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.56 -8.94 -37.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832472498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.954 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds