Wall clock time and date at job start Tue Mar 31 2020 12:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47041 * 2 1 4 4 O 1.42894 * 109.47334 * 239.99743 * 2 1 3 5 5 C 1.52999 * 109.46795 * 119.99535 * 2 1 3 6 6 H 1.09004 * 109.49737 * 64.93785 * 5 2 1 7 7 C 1.53044 * 109.49541 * 184.99903 * 5 2 1 8 8 C 1.53047 * 109.53627 * 181.35599 * 7 5 2 9 9 C 1.53197 * 109.31039 * 298.63275 * 8 7 5 10 10 N 1.46932 * 108.77328 * 54.63891 * 9 8 7 11 11 C 1.34772 * 120.62847 * 126.37159 * 10 9 8 12 12 O 1.21592 * 119.99672 * 186.25154 * 11 10 9 13 13 C 1.47636 * 120.00251 * 6.24164 * 11 10 9 14 14 C 1.40014 * 119.90014 * 215.89149 * 13 11 10 15 15 C 1.36315 * 120.10824 * 180.02562 * 14 13 11 16 16 C 1.40882 * 119.89220 * 359.97438 * 15 14 13 17 17 C 1.41116 * 120.10043 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99640 * 211.43438 * 17 16 15 19 19 C 1.40223 * 119.99937 * 31.43593 * 17 16 15 20 20 N 1.30641 * 120.00287 * 25.14804 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 205.14773 * 19 17 16 22 22 H 1.48502 * 109.47247 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46830 * 240.00182 * 21 19 17 24 24 H 1.48495 * 109.47079 * 120.00247 * 21 19 17 25 25 C 1.40890 * 119.79496 * 0.25102 * 16 15 14 26 26 C 1.36314 * 119.88934 * 359.50709 * 25 16 15 27 27 C 1.46926 * 118.73658 * 306.64084 * 10 9 8 28 28 H 1.09004 * 109.47390 * 300.00535 * 1 2 3 29 29 H 1.09005 * 109.46885 * 59.99651 * 1 2 3 30 30 H 1.08994 * 109.47697 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46683 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47270 * 300.00076 * 3 2 1 33 33 H 1.09002 * 109.47273 * 60.00012 * 3 2 1 34 34 H 0.96695 * 114.00254 * 300.00539 * 4 2 1 35 35 H 1.08999 * 109.46240 * 61.33532 * 7 5 2 36 36 H 1.08997 * 109.44795 * 301.36537 * 7 5 2 37 37 H 1.08999 * 109.49637 * 178.68399 * 8 7 5 38 38 H 1.08994 * 109.52522 * 58.59908 * 8 7 5 39 39 H 1.08999 * 109.58563 * 294.85290 * 9 8 7 40 40 H 1.08996 * 109.58271 * 174.42331 * 9 8 7 41 41 H 1.07996 * 119.94240 * 0.03193 * 14 13 11 42 42 H 1.08006 * 120.04791 * 179.97438 * 15 14 13 43 43 H 0.97008 * 120.00056 * 6.10582 * 20 19 17 44 44 H 1.07998 * 120.05213 * 179.75645 * 25 16 15 45 45 H 1.08000 * 119.94936 * 180.25900 * 26 25 16 46 46 H 1.09006 * 109.58502 * 173.14967 * 27 10 9 47 47 H 1.09005 * 109.58651 * 293.56918 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 1.7508 -1.7713 1.2067 7 6 3.5652 -0.6136 1.3144 8 6 4.0791 -1.3634 2.5456 9 6 3.4949 -0.7234 3.8090 10 7 2.0308 -0.6917 3.6893 11 6 1.2514 -1.2195 4.6538 12 8 0.0483 -1.2899 4.4926 13 6 1.8585 -1.7124 5.9061 14 6 1.3320 -2.8454 6.5382 15 6 1.8889 -3.3039 7.6949 16 6 2.9963 -2.6360 8.2539 17 6 3.5758 -3.1065 9.4515 18 1 4.0312 -2.4108 10.1407 19 6 3.5605 -4.4773 9.7465 20 7 3.4827 -5.3527 8.7800 21 14 3.6511 -5.0515 11.5218 22 1 3.7327 -3.8719 12.4201 23 1 4.8568 -5.8985 11.7070 24 1 2.4367 -5.8408 11.8494 25 6 3.5196 -1.4936 7.6168 26 6 2.9591 -1.0455 6.4578 27 6 1.4328 -0.0790 2.4953 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.7210 -1.5952 -1.2328 35 1 3.8527 0.4356 1.3820 36 1 3.9986 -1.0517 0.4154 37 1 5.1671 -1.3062 2.5786 38 1 3.7712 -2.4075 2.4911 39 1 3.8751 0.2928 3.9130 40 1 3.7775 -1.3127 4.6812 41 1 0.4835 -3.3570 6.1086 42 1 1.4818 -4.1777 8.1819 43 1 3.5249 -5.0602 7.8560 44 1 4.3659 -0.9761 8.0438 45 1 3.3621 -0.1723 5.9664 46 1 0.3551 -0.2432 2.5011 47 1 1.6414 0.9909 2.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832472498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:20 Heat of formation + Delta-G solvation = -101.033279 kcal Electronic energy + Delta-G solvation = -27147.372799 eV Core-core repulsion = 23486.071947 eV Total energy + Delta-G solvation = -3661.300852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64216 -40.12263 -39.03629 -37.55539 -35.91386 -34.33104 -33.24898 -31.91259 -31.68965 -30.24882 -28.51309 -27.76681 -26.11805 -24.89819 -23.51396 -22.96561 -22.23120 -20.85969 -20.07569 -19.90691 -18.32873 -17.59925 -17.20588 -16.68878 -16.33761 -16.01981 -15.86845 -15.61688 -15.48054 -15.24880 -14.96589 -14.79746 -14.49067 -14.30045 -14.09719 -13.98197 -13.73768 -13.41103 -13.22443 -13.10787 -12.89315 -12.84191 -12.70697 -12.59923 -12.36615 -11.99431 -11.93022 -11.85069 -11.79912 -11.62094 -11.53854 -11.28856 -10.97891 -10.83792 -10.59948 -9.79993 -9.68053 -9.47600 -9.26094 -6.59053 0.39453 0.91651 1.50836 1.53888 1.79554 1.91049 2.10459 2.28928 2.65750 3.26065 3.42429 3.58776 3.67199 3.78857 3.94762 4.04074 4.10976 4.19132 4.21571 4.22226 4.27729 4.31298 4.56238 4.63598 4.70563 4.73758 4.78229 4.82659 4.86186 4.92877 4.96274 4.98690 5.02872 5.05897 5.08230 5.18805 5.26847 5.31025 5.34377 5.46321 5.55238 5.59380 5.66868 5.73875 5.82198 6.11549 6.21858 6.43460 6.64243 6.79788 6.81137 7.25931 7.93074 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.002816 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.824937 B = 9941.236275 C =10167.443426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.141 3.859 3 C -0.144 4.144 4 O -0.568 6.568 5 C -0.117 4.117 6 H 0.058 0.942 7 C -0.104 4.104 8 C -0.132 4.132 9 C 0.091 3.909 10 N -0.607 5.607 11 C 0.573 3.427 12 O -0.602 6.602 13 C -0.285 4.285 14 C -0.036 4.036 15 C -0.237 4.237 16 C 0.089 3.911 17 C -0.535 4.535 18 H 0.085 0.915 19 C 0.005 3.995 20 N -0.802 5.802 21 Si 1.120 2.880 22 H -0.260 1.260 23 H -0.264 1.264 24 H -0.270 1.270 25 C -0.239 4.239 26 C -0.034 4.034 27 C 0.114 3.886 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.386 0.614 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.286 0.714 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.074 0.926 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 9.448 -14.074 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.201 4.201 4 O -0.375 6.375 5 C -0.137 4.137 6 H 0.077 0.923 7 C -0.141 4.141 8 C -0.170 4.170 9 C -0.031 4.031 10 N -0.338 5.338 11 C 0.366 3.634 12 O -0.486 6.486 13 C -0.289 4.289 14 C -0.056 4.056 15 C -0.257 4.257 16 C 0.086 3.914 17 C -0.562 4.562 18 H 0.103 0.897 19 C -0.213 4.213 20 N -0.424 5.424 21 Si 0.937 3.063 22 H -0.184 1.184 23 H -0.189 1.189 24 H -0.195 1.195 25 C -0.258 4.258 26 C -0.052 4.052 27 C -0.008 4.008 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.092 0.908 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.315 8.632 -13.395 16.103 hybrid contribution -0.650 0.287 -0.817 1.083 sum 1.665 8.919 -14.212 16.861 Atomic orbital electron populations 1.22563 0.95714 1.02594 1.03065 1.21054 0.92410 0.93216 0.83316 1.21912 1.02480 0.92793 1.02933 1.86504 1.77497 1.29967 1.43527 1.22034 0.97460 0.99716 0.94500 0.92335 1.21542 0.93287 1.01608 0.97684 1.21937 1.01640 0.99160 0.94277 1.22354 0.78189 1.02515 1.00043 1.47965 1.07464 1.58736 1.19667 1.18534 0.85528 0.75678 0.83628 1.90623 1.16612 1.59497 1.81878 1.19099 1.05477 1.04062 1.00266 1.20431 0.96461 0.94623 0.94052 1.20714 1.00422 1.04663 0.99879 1.18121 0.89692 0.91977 0.91651 1.21001 1.34514 0.96261 1.04459 0.89712 1.28536 0.89676 0.93106 1.10017 1.70446 1.29511 1.39130 1.03294 0.82970 0.78711 0.76822 0.67840 1.18362 1.18867 1.19511 1.20960 1.03875 1.02569 0.98426 1.20841 0.92337 0.97500 0.94551 1.21726 0.98502 0.97361 0.83210 0.91553 0.91021 0.92639 0.91061 0.91642 0.90292 0.76497 0.90011 0.90608 0.88591 0.93475 0.89209 0.89363 0.88920 0.89457 0.90229 0.86666 0.84549 0.90801 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.33 71.98 0.60 -2.54 16 2 C 0.14 2.42 0.87 -10.79 -0.01 2.41 16 3 C -0.14 -2.15 8.12 71.98 0.58 -1.57 16 4 O -0.57 -9.89 12.49 -148.98 -1.86 -11.75 16 5 C -0.12 -2.40 1.90 -10.86 -0.02 -2.42 16 6 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 7 C -0.10 -1.88 4.55 30.62 0.14 -1.74 16 8 C -0.13 -2.80 6.08 30.68 0.19 -2.61 16 9 C 0.09 2.32 4.77 86.36 0.41 2.73 16 10 N -0.61 -18.91 2.98 -823.35 -2.45 -21.36 16 11 C 0.57 23.71 7.36 86.73 0.64 24.35 16 12 O -0.60 -28.67 16.25 -4.01 -0.07 -28.73 16 13 C -0.28 -12.62 5.28 -19.93 -0.11 -12.73 16 14 C -0.04 -1.78 9.54 22.25 0.21 -1.57 16 15 C -0.24 -12.26 8.00 22.47 0.18 -12.08 16 16 C 0.09 4.51 5.16 -21.28 -0.11 4.40 16 17 C -0.54 -27.05 8.95 23.46 0.21 -26.84 16 18 H 0.08 4.11 7.96 -2.91 -0.02 4.09 16 19 C 0.01 0.24 4.90 85.35 0.42 0.66 16 20 N -0.80 -41.61 12.52 21.87 0.27 -41.33 16 21 Si 1.12 40.86 30.00 68.60 2.06 42.91 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 24 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 25 C -0.24 -10.67 9.73 22.47 0.22 -10.45 16 26 C -0.03 -1.36 7.28 22.25 0.16 -1.20 16 27 C 0.11 2.87 4.89 86.22 0.42 3.29 16 28 H 0.07 1.22 6.49 -2.38 -0.02 1.20 16 29 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.02 6.38 -2.39 -0.02 1.00 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.06 6.46 -2.39 -0.02 1.04 16 34 H 0.39 4.72 9.04 -74.06 -0.67 4.05 16 35 H 0.08 1.27 6.43 -2.39 -0.02 1.26 16 36 H 0.08 1.32 7.79 -2.39 -0.02 1.30 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.83 8.04 -2.39 -0.02 1.81 16 40 H 0.09 2.68 4.53 -2.39 -0.01 2.67 16 41 H 0.09 4.50 8.00 -2.91 -0.02 4.48 16 42 H 0.09 4.72 6.93 -2.91 -0.02 4.70 16 43 H 0.29 15.46 6.96 -92.70 -0.65 14.81 16 44 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.14 4.41 6.10 -2.91 -0.02 4.40 16 46 H 0.07 2.18 5.55 -2.38 -0.01 2.17 16 47 H 0.09 1.79 6.33 -2.38 -0.02 1.78 16 Total: -1.00 -63.55 361.16 2.53 -61.02 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.44 Total: 37.15 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 4.14 Total: -37.90 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -2.18 Total: -62.70 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.93 Total: -40.49 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.06 Total: 42.91 kcal Total: -63.55 2.53 -61.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832472498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.013 kcal (2) G-P(sol) polarization free energy of solvation -63.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds