Wall clock time and date at job start Tue Mar 31 2020 12:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46884 * 2 1 4 4 O 1.42894 * 109.47323 * 119.99725 * 2 1 3 5 5 C 1.52997 * 109.46827 * 240.00211 * 2 1 3 6 6 H 1.08993 * 109.49796 * 299.92844 * 5 2 1 7 7 C 1.53045 * 109.49764 * 179.83601 * 5 2 1 8 8 C 1.53036 * 109.53986 * 178.68522 * 7 5 2 9 9 C 1.53193 * 109.31551 * 61.36250 * 8 7 5 10 10 N 1.46921 * 108.77559 * 305.36929 * 9 8 7 11 11 C 1.34774 * 120.62967 * 233.58425 * 10 9 8 12 12 O 1.21587 * 120.00509 * 174.59285 * 11 10 9 13 13 C 1.47648 * 119.99801 * 354.59768 * 11 10 9 14 14 C 1.40012 * 119.89480 * 326.34150 * 13 11 10 15 15 C 1.36314 * 120.10615 * 179.76241 * 14 13 11 16 16 C 1.40883 * 119.89087 * 0.51701 * 15 14 13 17 17 C 1.41110 * 120.10300 * 179.71507 * 16 15 14 18 18 H 1.07999 * 120.00367 * 204.50082 * 17 16 15 19 19 C 1.40230 * 119.99986 * 24.50408 * 17 16 15 20 20 N 1.30644 * 119.99843 * 17.58633 * 19 17 16 21 21 Si 1.86794 * 120.00064 * 197.59087 * 19 17 16 22 22 H 1.48505 * 109.47271 * 59.99386 * 21 19 17 23 23 H 1.48494 * 109.47286 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47216 * 300.00001 * 21 19 17 25 25 C 1.40892 * 119.79452 * 359.74169 * 16 15 14 26 26 C 1.36314 * 119.89229 * 359.97438 * 25 16 15 27 27 C 1.46930 * 118.74189 * 53.60181 * 10 9 8 28 28 H 1.09001 * 109.47048 * 299.99820 * 1 2 3 29 29 H 1.08996 * 109.47353 * 59.99856 * 1 2 3 30 30 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47014 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47243 * 300.00211 * 3 2 1 33 33 H 1.09001 * 109.47131 * 60.00231 * 3 2 1 34 34 H 0.96702 * 114.00839 * 300.00295 * 4 2 1 35 35 H 1.09006 * 109.45863 * 298.70623 * 7 5 2 36 36 H 1.09002 * 109.46083 * 58.65684 * 7 5 2 37 37 H 1.08997 * 109.49731 * 301.41136 * 8 7 5 38 38 H 1.08997 * 109.49906 * 181.31813 * 8 7 5 39 39 H 1.08998 * 109.58591 * 185.57801 * 9 8 7 40 40 H 1.09002 * 109.58449 * 65.15486 * 9 8 7 41 41 H 1.08004 * 119.94246 * 0.02852 * 14 13 11 42 42 H 1.08001 * 120.05553 * 180.28519 * 15 14 13 43 43 H 0.97002 * 119.99610 * 180.02562 * 20 19 17 44 44 H 1.08004 * 120.05380 * 180.02562 * 25 16 15 45 45 H 1.07995 * 119.95146 * 179.97438 * 26 25 16 46 46 H 1.08998 * 109.58502 * 186.60340 * 27 10 9 47 47 H 1.09000 * 109.69788 * 66.25270 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6779 -1.7492 -1.2491 7 6 3.5704 -0.7180 -1.2520 8 6 4.0816 -1.4677 -2.4844 9 6 3.5943 -0.7545 -3.7496 10 7 2.1323 -0.6244 -3.6858 11 6 1.3586 -1.0696 -4.6956 12 8 0.1476 -1.0464 -4.5895 13 6 1.9816 -1.5855 -5.9308 14 6 3.1807 -1.0292 -6.3925 15 6 3.7621 -1.5054 -7.5297 16 6 3.1490 -2.5518 -8.2466 17 6 3.7439 -3.0441 -9.4276 18 1 3.1364 -3.5316 -10.1757 19 6 5.1241 -2.9006 -9.6299 20 7 5.9085 -2.6366 -8.6191 21 14 5.8410 -3.0867 -11.3447 22 1 5.2388 -2.0716 -12.2460 23 1 7.3118 -2.8894 -11.2905 24 1 5.5423 -4.4466 -11.8613 25 6 1.9396 -3.1047 -7.7810 26 6 1.3687 -2.6258 -6.6396 27 6 1.5296 0.0005 -2.5004 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.7211 -0.2701 1.9980 35 1 3.9313 0.3103 -1.2768 36 1 3.9362 -1.2093 -0.3504 37 1 3.7007 -2.4889 -2.4729 38 1 5.1713 -1.4852 -2.4734 39 1 3.8714 -1.3379 -4.6276 40 1 4.0470 0.2354 -3.8083 41 1 3.6478 -0.2243 -5.8443 42 1 4.6894 -1.0788 -7.8826 43 1 6.8632 -2.5370 -8.7591 44 1 1.4662 -3.9073 -8.3270 45 1 0.4415 -3.0487 -6.2820 46 1 0.4443 -0.0848 -2.5544 47 1 1.8117 1.0524 -2.4562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832472499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:25 Heat of formation + Delta-G solvation = -74.074022 kcal Electronic energy + Delta-G solvation = -27161.286233 eV Core-core repulsion = 23501.154422 eV Total energy + Delta-G solvation = -3660.131811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.22467 -38.70985 -37.16209 -36.28590 -33.96670 -33.27185 -32.02019 -30.48537 -29.52819 -29.06466 -27.65504 -26.28570 -24.73016 -23.89433 -21.79600 -21.22829 -20.78491 -19.44199 -18.64919 -17.51681 -16.72240 -16.55015 -15.85276 -15.55228 -15.01307 -14.83115 -14.38064 -14.21527 -14.10626 -13.82666 -13.64443 -13.22642 -13.16945 -12.94447 -12.60852 -12.45367 -12.21279 -12.13988 -11.92190 -11.79113 -11.74306 -11.56162 -11.30471 -11.23294 -11.06802 -10.87804 -10.68567 -10.65244 -10.44764 -10.21134 -10.05692 -9.94782 -9.53108 -9.28879 -8.92640 -8.18849 -7.65233 -7.52795 -7.01079 -4.58628 2.29931 2.93488 2.95006 2.99470 3.00688 3.45193 3.73887 3.78826 4.07508 4.50185 4.54398 4.64901 4.80311 5.01084 5.12608 5.21296 5.30716 5.34645 5.41247 5.50668 5.53409 5.62401 5.66063 5.69225 5.83914 5.90863 5.91717 5.95689 6.02879 6.06823 6.18679 6.20899 6.26393 6.28649 6.38464 6.49299 6.78306 6.83498 6.95666 7.07962 7.14578 7.44508 7.51488 7.62648 7.81786 7.86331 8.06225 8.11805 8.40948 8.64972 8.76185 8.99761 9.90380 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.002974 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.822361 B = 9412.032108 C =10068.710221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.134 3.866 3 C -0.183 4.183 4 O -0.558 6.558 5 C -0.086 4.086 6 H 0.079 0.921 7 C -0.109 4.109 8 C -0.137 4.137 9 C 0.093 3.907 10 N -0.616 5.616 11 C 0.577 3.423 12 O -0.572 6.572 13 C -0.280 4.280 14 C -0.071 4.071 15 C -0.177 4.177 16 C 0.127 3.873 17 C -0.445 4.445 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.774 5.774 21 Si 0.913 3.087 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.237 4.237 26 C -0.026 4.026 27 C 0.117 3.883 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.372 0.628 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.286 0.714 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 6.288 13.681 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.093 3.907 3 C -0.240 4.240 4 O -0.364 6.364 5 C -0.105 4.105 6 H 0.097 0.903 7 C -0.147 4.147 8 C -0.175 4.175 9 C -0.030 4.030 10 N -0.349 5.349 11 C 0.372 3.628 12 O -0.453 6.453 13 C -0.284 4.284 14 C -0.090 4.090 15 C -0.197 4.197 16 C 0.124 3.876 17 C -0.473 4.473 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.397 5.397 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.257 4.257 26 C -0.046 4.046 27 C -0.006 4.006 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.541 5.943 13.335 14.610 hybrid contribution 0.233 0.307 -0.162 0.418 sum -0.308 6.250 13.173 14.584 Atomic orbital electron populations 1.22561 0.95762 1.03052 1.02558 1.21102 0.92415 0.91164 0.86009 1.22623 1.02561 0.96378 1.02470 1.86564 1.77119 1.57198 1.15492 1.21426 0.96699 1.00433 0.91955 0.90271 1.21545 0.94208 1.00589 0.98334 1.21969 1.00705 1.00123 0.94695 1.22319 0.79845 1.00664 1.00124 1.47905 1.06947 1.61722 1.18320 1.18745 0.85877 0.75227 0.82912 1.90625 1.14641 1.57657 1.82354 1.18832 1.01380 1.08472 0.99710 1.20697 0.93472 0.98301 0.96565 1.21003 1.02123 0.99271 0.97254 1.17760 0.90199 0.88528 0.91097 1.19792 0.92580 1.31799 1.03114 0.89864 1.26067 0.97394 0.92222 0.98890 1.69725 1.06161 1.31785 1.32053 0.86277 0.77949 0.80252 0.81874 1.18530 1.20079 1.18711 1.20690 1.01042 1.04613 0.99309 1.20267 0.96371 0.94014 0.93901 1.21571 0.99733 0.95472 0.83813 0.92507 0.91041 0.91663 0.91346 0.91160 0.92581 0.78105 0.92002 0.91237 0.91541 0.90864 0.86481 0.92293 0.88235 0.86085 0.90249 0.88454 0.88623 0.89077 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.47 37.16 0.31 -1.45 16 2 C 0.13 1.37 0.86 -90.62 -0.08 1.29 16 3 C -0.18 -1.58 8.12 37.16 0.30 -1.28 16 4 O -0.56 -5.71 12.29 -35.23 -0.43 -6.14 16 5 C -0.09 -1.10 1.91 -90.50 -0.17 -1.27 16 6 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 7 C -0.11 -1.33 4.65 -26.69 -0.12 -1.45 16 8 C -0.14 -1.85 6.08 -26.61 -0.16 -2.01 16 9 C 0.09 1.45 4.74 -3.71 -0.02 1.43 16 10 N -0.62 -10.77 2.97 -173.96 -0.52 -11.29 16 11 C 0.58 12.47 7.39 -12.42 -0.09 12.38 16 12 O -0.57 -13.71 16.19 5.29 0.09 -13.62 16 13 C -0.28 -6.39 5.37 -104.73 -0.56 -6.95 16 14 C -0.07 -1.58 7.28 -39.61 -0.29 -1.87 16 15 C -0.18 -4.29 8.64 -39.27 -0.34 -4.63 16 16 C 0.13 3.22 5.58 -106.80 -0.60 2.62 16 17 C -0.45 -11.03 9.05 -37.74 -0.34 -11.37 16 18 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 19 C 0.08 1.74 5.14 -17.31 -0.09 1.65 16 20 N -0.77 -18.25 10.92 55.56 0.61 -17.64 16 21 Si 0.91 17.24 29.60 -169.99 -5.03 12.21 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 25 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 26 C -0.03 -0.62 9.53 -39.61 -0.38 -1.00 16 27 C 0.12 1.71 4.98 -3.71 -0.02 1.69 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.61 6.46 -51.93 -0.34 0.27 16 32 H 0.07 0.62 6.32 -51.93 -0.33 0.29 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.37 2.30 9.05 45.56 0.41 2.71 16 35 H 0.06 0.69 6.50 -51.93 -0.34 0.35 16 36 H 0.07 0.85 7.65 -51.93 -0.40 0.46 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.12 2.10 4.32 -51.93 -0.22 1.88 16 40 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 41 H 0.10 1.93 5.80 -52.48 -0.30 1.63 16 42 H 0.12 2.97 6.13 -52.49 -0.32 2.65 16 43 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 44 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 45 H 0.10 2.16 7.96 -52.49 -0.42 1.74 16 46 H 0.09 1.45 5.61 -51.93 -0.29 1.16 16 47 H 0.06 0.80 6.17 -51.93 -0.32 0.47 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -28.53 360.47 -9.01 -37.54 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.13 Total: 11.82 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -3.03 Total: -18.32 kcal Atomic # 7 Polarization: -29.02 SS G_CDS: 0.09 Total: -28.93 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.35 Total: -19.76 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.53 -9.01 -37.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832472499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.533 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds