Wall clock time and date at job start Tue Mar 31 2020 12:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46884 * 2 1 4 4 O 1.42894 * 109.47323 * 119.99725 * 2 1 3 5 5 C 1.52997 * 109.46827 * 240.00211 * 2 1 3 6 6 H 1.08993 * 109.49796 * 299.92844 * 5 2 1 7 7 C 1.53045 * 109.49764 * 179.83601 * 5 2 1 8 8 C 1.53036 * 109.53986 * 178.68522 * 7 5 2 9 9 C 1.53193 * 109.31551 * 61.36250 * 8 7 5 10 10 N 1.46921 * 108.77559 * 305.36929 * 9 8 7 11 11 C 1.34774 * 120.62967 * 233.58425 * 10 9 8 12 12 O 1.21587 * 120.00509 * 174.59285 * 11 10 9 13 13 C 1.47648 * 119.99801 * 354.59768 * 11 10 9 14 14 C 1.40012 * 119.89480 * 326.34150 * 13 11 10 15 15 C 1.36314 * 120.10615 * 179.76241 * 14 13 11 16 16 C 1.40883 * 119.89087 * 0.51701 * 15 14 13 17 17 C 1.41110 * 120.10300 * 179.71507 * 16 15 14 18 18 H 1.07999 * 120.00367 * 204.50082 * 17 16 15 19 19 C 1.40230 * 119.99986 * 24.50408 * 17 16 15 20 20 N 1.30644 * 119.99843 * 17.58633 * 19 17 16 21 21 Si 1.86794 * 120.00064 * 197.59087 * 19 17 16 22 22 H 1.48505 * 109.47271 * 59.99386 * 21 19 17 23 23 H 1.48494 * 109.47286 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47216 * 300.00001 * 21 19 17 25 25 C 1.40892 * 119.79452 * 359.74169 * 16 15 14 26 26 C 1.36314 * 119.89229 * 359.97438 * 25 16 15 27 27 C 1.46930 * 118.74189 * 53.60181 * 10 9 8 28 28 H 1.09001 * 109.47048 * 299.99820 * 1 2 3 29 29 H 1.08996 * 109.47353 * 59.99856 * 1 2 3 30 30 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47014 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47243 * 300.00211 * 3 2 1 33 33 H 1.09001 * 109.47131 * 60.00231 * 3 2 1 34 34 H 0.96702 * 114.00839 * 300.00295 * 4 2 1 35 35 H 1.09006 * 109.45863 * 298.70623 * 7 5 2 36 36 H 1.09002 * 109.46083 * 58.65684 * 7 5 2 37 37 H 1.08997 * 109.49731 * 301.41136 * 8 7 5 38 38 H 1.08997 * 109.49906 * 181.31813 * 8 7 5 39 39 H 1.08998 * 109.58591 * 185.57801 * 9 8 7 40 40 H 1.09002 * 109.58449 * 65.15486 * 9 8 7 41 41 H 1.08004 * 119.94246 * 0.02852 * 14 13 11 42 42 H 1.08001 * 120.05553 * 180.28519 * 15 14 13 43 43 H 0.97002 * 119.99610 * 180.02562 * 20 19 17 44 44 H 1.08004 * 120.05380 * 180.02562 * 25 16 15 45 45 H 1.07995 * 119.95146 * 179.97438 * 26 25 16 46 46 H 1.08998 * 109.58502 * 186.60340 * 27 10 9 47 47 H 1.09000 * 109.69788 * 66.25270 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6779 -1.7492 -1.2491 7 6 3.5704 -0.7180 -1.2520 8 6 4.0816 -1.4677 -2.4844 9 6 3.5943 -0.7545 -3.7496 10 7 2.1323 -0.6244 -3.6858 11 6 1.3586 -1.0696 -4.6956 12 8 0.1476 -1.0464 -4.5895 13 6 1.9816 -1.5855 -5.9308 14 6 3.1807 -1.0292 -6.3925 15 6 3.7621 -1.5054 -7.5297 16 6 3.1490 -2.5518 -8.2466 17 6 3.7439 -3.0441 -9.4276 18 1 3.1364 -3.5316 -10.1757 19 6 5.1241 -2.9006 -9.6299 20 7 5.9085 -2.6366 -8.6191 21 14 5.8410 -3.0867 -11.3447 22 1 5.2388 -2.0716 -12.2460 23 1 7.3118 -2.8894 -11.2905 24 1 5.5423 -4.4466 -11.8613 25 6 1.9396 -3.1047 -7.7810 26 6 1.3687 -2.6258 -6.6396 27 6 1.5296 0.0005 -2.5004 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.7211 -0.2701 1.9980 35 1 3.9313 0.3103 -1.2768 36 1 3.9362 -1.2093 -0.3504 37 1 3.7007 -2.4889 -2.4729 38 1 5.1713 -1.4852 -2.4734 39 1 3.8714 -1.3379 -4.6276 40 1 4.0470 0.2354 -3.8083 41 1 3.6478 -0.2243 -5.8443 42 1 4.6894 -1.0788 -7.8826 43 1 6.8632 -2.5370 -8.7591 44 1 1.4662 -3.9073 -8.3270 45 1 0.4415 -3.0487 -6.2820 46 1 0.4443 -0.0848 -2.5544 47 1 1.8117 1.0524 -2.4562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832472499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:24 Heat of formation + Delta-G solvation = -90.647660 kcal Electronic energy + Delta-G solvation = -27162.004920 eV Core-core repulsion = 23501.154422 eV Total energy + Delta-G solvation = -3660.850498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56252 -39.98594 -38.83986 -37.58520 -35.71249 -34.40601 -33.19484 -32.11083 -31.36479 -30.23883 -28.41439 -27.92706 -26.16326 -25.01708 -23.39169 -22.86199 -22.16798 -20.69085 -19.94385 -19.33758 -18.09543 -17.57330 -17.39180 -16.99855 -16.28647 -16.09932 -15.78811 -15.52511 -15.39013 -15.05183 -14.82169 -14.59489 -14.52534 -14.29076 -14.08944 -13.92116 -13.68126 -13.47936 -13.20280 -12.87888 -12.84080 -12.69759 -12.66930 -12.58458 -12.53811 -12.33577 -11.92093 -11.78909 -11.74360 -11.65763 -11.31354 -11.19850 -11.04687 -10.78322 -10.62431 -9.65143 -9.48808 -9.34994 -8.76164 -6.46075 0.51211 1.13070 1.39766 1.45255 1.52434 1.97172 2.14187 2.19035 2.73163 3.24828 3.58563 3.66112 3.75585 3.90054 3.99582 4.07760 4.16260 4.19958 4.28054 4.31989 4.37799 4.41013 4.59167 4.65603 4.69791 4.74678 4.85074 4.90029 4.93896 4.96116 5.00421 5.04209 5.09092 5.14698 5.17411 5.20413 5.30147 5.32144 5.34481 5.48651 5.58294 5.65832 5.81934 5.97620 6.00433 6.23313 6.49820 6.55474 6.79358 6.89968 6.94864 7.33200 8.18240 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026463 B = 0.002974 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.822361 B = 9412.032108 C =10068.710221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.140 3.860 3 C -0.179 4.179 4 O -0.572 6.572 5 C -0.083 4.083 6 H 0.048 0.952 7 C -0.101 4.101 8 C -0.132 4.132 9 C 0.089 3.911 10 N -0.608 5.608 11 C 0.572 3.428 12 O -0.604 6.604 13 C -0.289 4.289 14 C -0.057 4.057 15 C -0.195 4.195 16 C 0.101 3.899 17 C -0.477 4.477 18 H 0.083 0.917 19 C 0.040 3.960 20 N -0.796 5.796 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.262 1.262 24 H -0.260 1.260 25 C -0.252 4.252 26 C -0.037 4.037 27 C 0.116 3.884 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.391 0.609 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.297 0.703 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 7.989 14.928 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.236 4.236 4 O -0.381 6.381 5 C -0.103 4.103 6 H 0.067 0.933 7 C -0.138 4.138 8 C -0.171 4.171 9 C -0.032 4.032 10 N -0.340 5.340 11 C 0.367 3.633 12 O -0.488 6.488 13 C -0.293 4.293 14 C -0.075 4.075 15 C -0.214 4.214 16 C 0.098 3.902 17 C -0.504 4.504 18 H 0.101 0.899 19 C -0.179 4.179 20 N -0.420 5.420 21 Si 0.805 3.195 22 H -0.185 1.185 23 H -0.186 1.186 24 H -0.184 1.184 25 C -0.272 4.272 26 C -0.056 4.056 27 C -0.006 4.006 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.241 0.759 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.097 7.657 14.642 16.560 hybrid contribution -0.281 -0.234 -0.415 0.553 sum 0.817 7.423 14.227 16.068 Atomic orbital electron populations 1.22554 0.95666 1.02185 1.03460 1.20958 0.92390 0.91804 0.84973 1.22582 1.02632 0.94849 1.03547 1.86512 1.77294 1.57904 1.16384 1.21349 0.97366 0.98865 0.92701 0.93335 1.21501 0.93333 1.01518 0.97496 1.21940 1.01937 0.98838 0.94343 1.22423 0.78586 1.01999 1.00233 1.47935 1.07692 1.60293 1.18065 1.18599 0.85654 0.75581 0.83513 1.90600 1.15875 1.59269 1.83040 1.19094 1.01616 1.08175 1.00447 1.20882 0.92758 0.98262 0.95642 1.21016 1.02397 0.99740 0.98284 1.18097 0.90845 0.89297 0.91924 1.20054 0.93894 1.33104 1.03351 0.89926 1.26863 0.96981 0.91354 1.02743 1.69741 1.06955 1.31340 1.33913 0.85192 0.77627 0.80097 0.76556 1.18451 1.18644 1.18415 1.20816 1.01331 1.05204 0.99831 1.20411 0.96618 0.94581 0.94023 1.21770 0.98770 0.96833 0.83204 0.89995 0.91744 0.93459 0.91138 0.91240 0.90430 0.75882 0.89928 0.90924 0.93685 0.88712 0.88991 0.89471 0.85466 0.86622 0.89174 0.87948 0.88468 0.90762 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.47 71.98 0.61 -2.65 16 2 C 0.14 2.55 0.86 -10.79 -0.01 2.54 16 3 C -0.18 -2.44 8.12 71.98 0.58 -1.85 16 4 O -0.57 -10.29 12.29 -148.98 -1.83 -12.12 16 5 C -0.08 -2.04 1.91 -10.72 -0.02 -2.06 16 6 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 7 C -0.10 -2.21 4.65 30.62 0.14 -2.07 16 8 C -0.13 -3.37 6.08 30.67 0.19 -3.18 16 9 C 0.09 2.64 4.74 86.36 0.41 3.05 16 10 N -0.61 -20.92 2.97 -822.54 -2.44 -23.37 16 11 C 0.57 25.09 7.39 86.73 0.64 25.73 16 12 O -0.60 -29.69 16.19 -3.99 -0.06 -29.76 16 13 C -0.29 -13.49 5.37 -19.93 -0.11 -13.60 16 14 C -0.06 -2.53 7.28 22.25 0.16 -2.36 16 15 C -0.20 -9.63 8.64 22.47 0.19 -9.44 16 16 C 0.10 5.30 5.58 -21.28 -0.12 5.18 16 17 C -0.48 -24.19 9.05 23.46 0.21 -23.98 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 19 C 0.04 1.84 5.14 85.35 0.44 2.28 16 20 N -0.80 -37.51 10.92 21.87 0.24 -37.27 16 21 Si 0.99 34.81 29.60 68.60 2.03 36.84 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 23 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 24 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 25 C -0.25 -12.69 9.73 22.47 0.22 -12.47 16 26 C -0.04 -1.82 9.53 22.25 0.21 -1.60 16 27 C 0.12 3.25 4.98 86.36 0.43 3.68 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.25 6.56 -2.39 -0.02 1.23 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.96 6.46 -2.39 -0.02 0.94 16 32 H 0.07 0.97 6.32 -2.39 -0.02 0.95 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.39 3.62 9.05 -74.06 -0.67 2.95 16 35 H 0.08 1.51 6.50 -2.38 -0.02 1.49 16 36 H 0.07 1.60 7.65 -2.39 -0.02 1.58 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.09 3.24 4.32 -2.39 -0.01 3.23 16 40 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 41 H 0.13 4.81 5.80 -2.91 -0.02 4.80 16 42 H 0.12 5.76 6.13 -2.91 -0.02 5.75 16 43 H 0.30 12.43 8.29 -92.71 -0.77 11.66 16 44 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 45 H 0.10 4.61 7.96 -2.91 -0.02 4.58 16 46 H 0.07 2.37 5.61 -2.39 -0.01 2.35 16 47 H 0.09 2.04 6.17 -2.39 -0.01 2.03 16 Total: -1.00 -63.51 360.47 2.44 -61.08 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.32 Total: 37.41 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.19 Total: -32.81 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -2.21 Total: -60.64 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.90 Total: -41.88 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Total: -63.51 2.44 -61.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832472499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.571 kcal (2) G-P(sol) polarization free energy of solvation -63.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds