Wall clock time and date at job start Tue Mar 31 2020 12:17:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.46884 * 2 1
4 4 O 1.42894 * 109.47323 * 119.99725 * 2 1 3
5 5 C 1.52997 * 109.46827 * 240.00211 * 2 1 3
6 6 H 1.08993 * 109.49796 * 299.92844 * 5 2 1
7 7 C 1.53045 * 109.49764 * 179.83601 * 5 2 1
8 8 C 1.53036 * 109.53986 * 178.68522 * 7 5 2
9 9 C 1.53193 * 109.31551 * 61.36250 * 8 7 5
10 10 N 1.46921 * 108.77559 * 305.36929 * 9 8 7
11 11 C 1.34774 * 120.62967 * 233.58425 * 10 9 8
12 12 O 1.21587 * 120.00509 * 174.59285 * 11 10 9
13 13 C 1.47648 * 119.99801 * 354.59768 * 11 10 9
14 14 C 1.40012 * 119.89480 * 326.34150 * 13 11 10
15 15 C 1.36314 * 120.10615 * 179.76241 * 14 13 11
16 16 C 1.40883 * 119.89087 * 0.51701 * 15 14 13
17 17 C 1.41110 * 120.10300 * 179.71507 * 16 15 14
18 18 H 1.07999 * 120.00367 * 204.50082 * 17 16 15
19 19 C 1.40230 * 119.99986 * 24.50408 * 17 16 15
20 20 N 1.30644 * 119.99843 * 17.58633 * 19 17 16
21 21 Si 1.86794 * 120.00064 * 197.59087 * 19 17 16
22 22 H 1.48505 * 109.47271 * 59.99386 * 21 19 17
23 23 H 1.48494 * 109.47286 * 179.97438 * 21 19 17
24 24 H 1.48505 * 109.47216 * 300.00001 * 21 19 17
25 25 C 1.40892 * 119.79452 * 359.74169 * 16 15 14
26 26 C 1.36314 * 119.89229 * 359.97438 * 25 16 15
27 27 C 1.46930 * 118.74189 * 53.60181 * 10 9 8
28 28 H 1.09001 * 109.47048 * 299.99820 * 1 2 3
29 29 H 1.08996 * 109.47353 * 59.99856 * 1 2 3
30 30 H 1.09001 * 109.47173 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.47014 * 180.02562 * 3 2 1
32 32 H 1.08996 * 109.47243 * 300.00211 * 3 2 1
33 33 H 1.09001 * 109.47131 * 60.00231 * 3 2 1
34 34 H 0.96702 * 114.00839 * 300.00295 * 4 2 1
35 35 H 1.09006 * 109.45863 * 298.70623 * 7 5 2
36 36 H 1.09002 * 109.46083 * 58.65684 * 7 5 2
37 37 H 1.08997 * 109.49731 * 301.41136 * 8 7 5
38 38 H 1.08997 * 109.49906 * 181.31813 * 8 7 5
39 39 H 1.08998 * 109.58591 * 185.57801 * 9 8 7
40 40 H 1.09002 * 109.58449 * 65.15486 * 9 8 7
41 41 H 1.08004 * 119.94246 * 0.02852 * 14 13 11
42 42 H 1.08001 * 120.05553 * 180.28519 * 15 14 13
43 43 H 0.97002 * 119.99610 * 180.02562 * 20 19 17
44 44 H 1.08004 * 120.05380 * 180.02562 * 25 16 15
45 45 H 1.07995 * 119.95146 * 179.97438 * 26 25 16
46 46 H 1.08998 * 109.58502 * 186.60340 * 27 10 9
47 47 H 1.09000 * 109.69788 * 66.25270 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 2.0064 -0.6735 1.1667
5 6 2.0399 -0.7212 -1.2493
6 1 1.6779 -1.7492 -1.2491
7 6 3.5704 -0.7180 -1.2520
8 6 4.0816 -1.4677 -2.4844
9 6 3.5943 -0.7545 -3.7496
10 7 2.1323 -0.6244 -3.6858
11 6 1.3586 -1.0696 -4.6956
12 8 0.1476 -1.0464 -4.5895
13 6 1.9816 -1.5855 -5.9308
14 6 3.1807 -1.0292 -6.3925
15 6 3.7621 -1.5054 -7.5297
16 6 3.1490 -2.5518 -8.2466
17 6 3.7439 -3.0441 -9.4276
18 1 3.1364 -3.5316 -10.1757
19 6 5.1241 -2.9006 -9.6299
20 7 5.9085 -2.6366 -8.6191
21 14 5.8410 -3.0867 -11.3447
22 1 5.2388 -2.0716 -12.2460
23 1 7.3118 -2.8894 -11.2905
24 1 5.5423 -4.4466 -11.8613
25 6 1.9396 -3.1047 -7.7810
26 6 1.3687 -2.6258 -6.6396
27 6 1.5296 0.0005 -2.5004
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 3.1300 1.4426 -0.0005
32 1 1.6766 1.9564 -0.8899
33 1 1.6766 1.9564 0.8900
34 1 1.7211 -0.2701 1.9980
35 1 3.9313 0.3103 -1.2768
36 1 3.9362 -1.2093 -0.3504
37 1 3.7007 -2.4889 -2.4729
38 1 5.1713 -1.4852 -2.4734
39 1 3.8714 -1.3379 -4.6276
40 1 4.0470 0.2354 -3.8083
41 1 3.6478 -0.2243 -5.8443
42 1 4.6894 -1.0788 -7.8826
43 1 6.8632 -2.5370 -8.7591
44 1 1.4662 -3.9073 -8.3270
45 1 0.4415 -3.0487 -6.2820
46 1 0.4443 -0.0848 -2.5544
47 1 1.8117 1.0524 -2.4562
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000832472499.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:24
Heat of formation + Delta-G solvation = -90.647660 kcal
Electronic energy + Delta-G solvation = -27162.004920 eV
Core-core repulsion = 23501.154422 eV
Total energy + Delta-G solvation = -3660.850498 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.56252 -39.98594 -38.83986 -37.58520 -35.71249 -34.40601 -33.19484 -32.11083
-31.36479 -30.23883 -28.41439 -27.92706 -26.16326 -25.01708 -23.39169 -22.86199
-22.16798 -20.69085 -19.94385 -19.33758 -18.09543 -17.57330 -17.39180 -16.99855
-16.28647 -16.09932 -15.78811 -15.52511 -15.39013 -15.05183 -14.82169 -14.59489
-14.52534 -14.29076 -14.08944 -13.92116 -13.68126 -13.47936 -13.20280 -12.87888
-12.84080 -12.69759 -12.66930 -12.58458 -12.53811 -12.33577 -11.92093 -11.78909
-11.74360 -11.65763 -11.31354 -11.19850 -11.04687 -10.78322 -10.62431 -9.65143
-9.48808 -9.34994 -8.76164 -6.46075 0.51211 1.13070 1.39766 1.45255
1.52434 1.97172 2.14187 2.19035 2.73163 3.24828 3.58563 3.66112
3.75585 3.90054 3.99582 4.07760 4.16260 4.19958 4.28054 4.31989
4.37799 4.41013 4.59167 4.65603 4.69791 4.74678 4.85074 4.90029
4.93896 4.96116 5.00421 5.04209 5.09092 5.14698 5.17411 5.20413
5.30147 5.32144 5.34481 5.48651 5.58294 5.65832 5.81934 5.97620
6.00433 6.23313 6.49820 6.55474 6.79358 6.89968 6.94864 7.33200
8.18240
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.026463 B = 0.002974 C = 0.002780
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.822361 B = 9412.032108 C =10068.710221
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.140 3.860
3 C -0.179 4.179
4 O -0.572 6.572
5 C -0.083 4.083
6 H 0.048 0.952
7 C -0.101 4.101
8 C -0.132 4.132
9 C 0.089 3.911
10 N -0.608 5.608
11 C 0.572 3.428
12 O -0.604 6.604
13 C -0.289 4.289
14 C -0.057 4.057
15 C -0.195 4.195
16 C 0.101 3.899
17 C -0.477 4.477
18 H 0.083 0.917
19 C 0.040 3.960
20 N -0.796 5.796
21 Si 0.985 3.015
22 H -0.260 1.260
23 H -0.262 1.262
24 H -0.260 1.260
25 C -0.252 4.252
26 C -0.037 4.037
27 C 0.116 3.884
28 H 0.081 0.919
29 H 0.064 0.936
30 H 0.046 0.954
31 H 0.070 0.930
32 H 0.069 0.931
33 H 0.077 0.923
34 H 0.391 0.609
35 H 0.082 0.918
36 H 0.072 0.928
37 H 0.044 0.956
38 H 0.094 0.906
39 H 0.092 0.908
40 H 0.087 0.913
41 H 0.128 0.872
42 H 0.116 0.884
43 H 0.297 0.703
44 H 0.102 0.898
45 H 0.097 0.903
46 H 0.074 0.926
47 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.181 7.989 14.928 16.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.099 3.901
3 C -0.236 4.236
4 O -0.381 6.381
5 C -0.103 4.103
6 H 0.067 0.933
7 C -0.138 4.138
8 C -0.171 4.171
9 C -0.032 4.032
10 N -0.340 5.340
11 C 0.367 3.633
12 O -0.488 6.488
13 C -0.293 4.293
14 C -0.075 4.075
15 C -0.214 4.214
16 C 0.098 3.902
17 C -0.504 4.504
18 H 0.101 0.899
19 C -0.179 4.179
20 N -0.420 5.420
21 Si 0.805 3.195
22 H -0.185 1.185
23 H -0.186 1.186
24 H -0.184 1.184
25 C -0.272 4.272
26 C -0.056 4.056
27 C -0.006 4.006
28 H 0.100 0.900
29 H 0.083 0.917
30 H 0.065 0.935
31 H 0.089 0.911
32 H 0.088 0.912
33 H 0.096 0.904
34 H 0.241 0.759
35 H 0.101 0.899
36 H 0.091 0.909
37 H 0.063 0.937
38 H 0.113 0.887
39 H 0.110 0.890
40 H 0.105 0.895
41 H 0.145 0.855
42 H 0.134 0.866
43 H 0.108 0.892
44 H 0.121 0.879
45 H 0.115 0.885
46 H 0.092 0.908
47 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 1.097 7.657 14.642 16.560
hybrid contribution -0.281 -0.234 -0.415 0.553
sum 0.817 7.423 14.227 16.068
Atomic orbital electron populations
1.22554 0.95666 1.02185 1.03460 1.20958 0.92390 0.91804 0.84973
1.22582 1.02632 0.94849 1.03547 1.86512 1.77294 1.57904 1.16384
1.21349 0.97366 0.98865 0.92701 0.93335 1.21501 0.93333 1.01518
0.97496 1.21940 1.01937 0.98838 0.94343 1.22423 0.78586 1.01999
1.00233 1.47935 1.07692 1.60293 1.18065 1.18599 0.85654 0.75581
0.83513 1.90600 1.15875 1.59269 1.83040 1.19094 1.01616 1.08175
1.00447 1.20882 0.92758 0.98262 0.95642 1.21016 1.02397 0.99740
0.98284 1.18097 0.90845 0.89297 0.91924 1.20054 0.93894 1.33104
1.03351 0.89926 1.26863 0.96981 0.91354 1.02743 1.69741 1.06955
1.31340 1.33913 0.85192 0.77627 0.80097 0.76556 1.18451 1.18644
1.18415 1.20816 1.01331 1.05204 0.99831 1.20411 0.96618 0.94581
0.94023 1.21770 0.98770 0.96833 0.83204 0.89995 0.91744 0.93459
0.91138 0.91240 0.90430 0.75882 0.89928 0.90924 0.93685 0.88712
0.88991 0.89471 0.85466 0.86622 0.89174 0.87948 0.88468 0.90762
0.89313
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.26 8.47 71.98 0.61 -2.65 16
2 C 0.14 2.55 0.86 -10.79 -0.01 2.54 16
3 C -0.18 -2.44 8.12 71.98 0.58 -1.85 16
4 O -0.57 -10.29 12.29 -148.98 -1.83 -12.12 16
5 C -0.08 -2.04 1.91 -10.72 -0.02 -2.06 16
6 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
7 C -0.10 -2.21 4.65 30.62 0.14 -2.07 16
8 C -0.13 -3.37 6.08 30.67 0.19 -3.18 16
9 C 0.09 2.64 4.74 86.36 0.41 3.05 16
10 N -0.61 -20.92 2.97 -822.54 -2.44 -23.37 16
11 C 0.57 25.09 7.39 86.73 0.64 25.73 16
12 O -0.60 -29.69 16.19 -3.99 -0.06 -29.76 16
13 C -0.29 -13.49 5.37 -19.93 -0.11 -13.60 16
14 C -0.06 -2.53 7.28 22.25 0.16 -2.36 16
15 C -0.20 -9.63 8.64 22.47 0.19 -9.44 16
16 C 0.10 5.30 5.58 -21.28 -0.12 5.18 16
17 C -0.48 -24.19 9.05 23.46 0.21 -23.98 16
18 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16
19 C 0.04 1.84 5.14 85.35 0.44 2.28 16
20 N -0.80 -37.51 10.92 21.87 0.24 -37.27 16
21 Si 0.99 34.81 29.60 68.60 2.03 36.84 16
22 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16
23 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16
24 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16
25 C -0.25 -12.69 9.73 22.47 0.22 -12.47 16
26 C -0.04 -1.82 9.53 22.25 0.21 -1.60 16
27 C 0.12 3.25 4.98 86.36 0.43 3.68 16
28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
29 H 0.06 1.25 6.56 -2.39 -0.02 1.23 16
30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
31 H 0.07 0.96 6.46 -2.39 -0.02 0.94 16
32 H 0.07 0.97 6.32 -2.39 -0.02 0.95 16
33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
34 H 0.39 3.62 9.05 -74.06 -0.67 2.95 16
35 H 0.08 1.51 6.50 -2.38 -0.02 1.49 16
36 H 0.07 1.60 7.65 -2.39 -0.02 1.58 16
37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16
39 H 0.09 3.24 4.32 -2.39 -0.01 3.23 16
40 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16
41 H 0.13 4.81 5.80 -2.91 -0.02 4.80 16
42 H 0.12 5.76 6.13 -2.91 -0.02 5.75 16
43 H 0.30 12.43 8.29 -92.71 -0.77 11.66 16
44 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16
45 H 0.10 4.61 7.96 -2.91 -0.02 4.58 16
46 H 0.07 2.37 5.61 -2.39 -0.01 2.35 16
47 H 0.09 2.04 6.17 -2.39 -0.01 2.03 16
Total: -1.00 -63.51 360.47 2.44 -61.08
By element:
Atomic # 1 Polarization: 37.08 SS G_CDS: 0.32 Total: 37.41 kcal
Atomic # 6 Polarization: -36.99 SS G_CDS: 4.19 Total: -32.81 kcal
Atomic # 7 Polarization: -58.43 SS G_CDS: -2.21 Total: -60.64 kcal
Atomic # 8 Polarization: -39.98 SS G_CDS: -1.90 Total: -41.88 kcal
Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal
Total: -63.51 2.44 -61.08 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000832472499.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.571 kcal
(2) G-P(sol) polarization free energy of solvation -63.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.076 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds