Wall clock time and date at job start Tue Mar 31 2020 12:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 O 1.42899 * 109.47227 * 239.99609 * 2 1 3 5 5 C 1.53002 * 109.46958 * 119.99869 * 2 1 3 6 6 H 1.09005 * 109.52557 * 65.07940 * 5 2 1 7 7 C 1.53071 * 109.62331 * 185.10436 * 5 2 1 8 8 C 1.53044 * 109.65922 * 181.16911 * 7 5 2 9 9 C 1.53191 * 109.31268 * 298.70001 * 8 7 5 10 10 N 1.46930 * 108.77324 * 54.64010 * 9 8 7 11 11 C 1.34776 * 120.63370 * 126.36716 * 10 9 8 12 12 O 1.21551 * 119.99892 * 175.72452 * 11 10 9 13 13 C 1.47883 * 119.99813 * 355.72662 * 11 10 9 14 14 C 1.39921 * 120.02552 * 226.14202 * 13 11 10 15 15 C 1.38328 * 120.36118 * 179.97438 * 14 13 11 16 16 C 1.37759 * 120.40744 * 0.02562 * 15 14 13 17 17 C 1.40749 * 120.04206 * 0.02562 * 16 15 14 18 18 C 1.41436 * 120.17703 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00259 * 205.04738 * 18 17 16 20 20 C 1.39936 * 120.00030 * 25.03791 * 18 17 16 21 21 N 1.30824 * 120.00195 * 17.10007 * 20 18 17 22 22 Si 1.86804 * 120.00034 * 197.09160 * 20 18 17 23 23 H 1.48499 * 109.47095 * 90.00729 * 22 20 18 24 24 H 1.48503 * 109.47001 * 210.00371 * 22 20 18 25 25 H 1.48495 * 109.47099 * 330.00189 * 22 20 18 26 26 C 1.38999 * 120.02507 * 45.87510 * 13 11 10 27 27 C 1.46930 * 118.73446 * 306.38217 * 10 9 8 28 28 H 1.08997 * 109.47345 * 300.00188 * 1 2 3 29 29 H 1.08995 * 109.46992 * 60.00072 * 1 2 3 30 30 H 1.09001 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47100 * 299.99862 * 3 2 1 33 33 H 1.09007 * 109.47113 * 60.00244 * 3 2 1 34 34 H 0.96701 * 113.99743 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.34715 * 61.15056 * 7 5 2 36 36 H 1.08993 * 109.44534 * 301.25615 * 7 5 2 37 37 H 1.09002 * 109.49809 * 178.75104 * 8 7 5 38 38 H 1.08998 * 109.49681 * 58.65398 * 8 7 5 39 39 H 1.08993 * 109.58988 * 294.84888 * 9 8 7 40 40 H 1.08998 * 109.58521 * 174.41953 * 9 8 7 41 41 H 1.07995 * 119.81718 * 0.02562 * 14 13 11 42 42 H 1.07992 * 119.79390 * 180.02562 * 15 14 13 43 43 H 1.08004 * 119.97777 * 180.02562 * 16 15 14 44 44 H 0.97003 * 120.00597 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.20117 * 359.97438 * 26 13 11 46 46 H 1.09006 * 109.58415 * 173.39912 * 27 10 9 47 47 H 1.08997 * 109.58777 * 293.68206 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 1.7532 -1.7720 1.2059 7 6 3.5652 -0.6131 1.3186 8 6 4.0787 -1.3591 2.5524 9 6 3.4909 -0.7178 3.8133 10 7 2.0269 -0.6897 3.6910 11 6 1.2470 -1.2174 4.6553 12 8 0.0378 -1.1192 4.5804 13 6 1.8625 -1.9156 5.8044 14 6 1.3575 -3.1507 6.2255 15 6 1.9282 -3.8102 7.2992 16 6 2.9997 -3.2587 7.9666 17 6 3.5207 -2.0166 7.5583 18 6 4.6211 -1.4480 8.2411 19 1 4.7721 -0.3788 8.2259 20 6 5.5140 -2.2709 8.9367 21 7 5.5436 -3.5561 8.6943 22 14 6.6638 -1.5341 10.2113 23 1 6.0030 -1.5483 11.5411 24 1 7.9138 -2.3337 10.2713 25 1 6.9888 -0.1350 9.8348 26 6 2.9467 -1.3481 6.4637 27 6 1.4294 -0.0758 2.4973 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 2.9703 -0.7122 -1.2326 35 1 3.8502 0.4369 1.3846 36 1 4.0013 -1.0521 0.4213 37 1 5.1665 -1.2993 2.5871 38 1 3.7729 -2.4040 2.4992 39 1 3.8686 0.2995 3.9159 40 1 3.7733 -1.3046 4.6873 41 1 0.5181 -3.5920 5.7088 42 1 1.5314 -4.7632 7.6161 43 1 3.4402 -3.7798 8.8038 44 1 6.1628 -4.1265 9.1761 45 1 3.3428 -0.3973 6.1392 46 1 0.3517 -0.2391 2.5031 47 1 1.6369 0.9942 2.4940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832496833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:28 Heat of formation + Delta-G solvation = -76.757765 kcal Electronic energy + Delta-G solvation = -27342.603857 eV Core-core repulsion = 23682.355670 eV Total energy + Delta-G solvation = -3660.248187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.39364 -38.85460 -37.13374 -36.31658 -33.78907 -33.28071 -32.22618 -30.36371 -29.96951 -28.97838 -27.69209 -25.48280 -25.27075 -23.85528 -22.21504 -21.19461 -20.83324 -19.65626 -18.85194 -17.57335 -16.84355 -16.12997 -15.72755 -15.39621 -15.10843 -14.95364 -14.68472 -14.58078 -14.34608 -14.03991 -13.36029 -13.31697 -13.08593 -12.83726 -12.69001 -12.52029 -12.31176 -12.25930 -12.06086 -11.77957 -11.73577 -11.45531 -11.32882 -11.25401 -11.05129 -10.90418 -10.73413 -10.65514 -10.50795 -10.30053 -10.25846 -9.96534 -9.58970 -9.29323 -9.05081 -8.32421 -7.62071 -7.54570 -6.87311 -4.50062 2.31180 2.67660 3.01219 3.04185 3.09508 3.30572 3.60950 3.85087 4.04242 4.47036 4.50763 4.56391 4.73285 4.89260 4.98021 5.13779 5.21352 5.32466 5.36007 5.45657 5.48894 5.55311 5.63314 5.66572 5.74937 5.75891 5.84168 5.90126 5.95594 6.02451 6.13258 6.14988 6.16718 6.26660 6.34768 6.38870 6.70451 6.85655 6.87097 6.99632 7.12404 7.31072 7.47618 7.59514 7.76928 7.85415 7.91974 8.05614 8.45664 8.71115 8.74147 8.78084 10.07372 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.003348 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.918630 B = 8362.176274 C = 9102.251290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 C -0.183 4.183 4 O -0.560 6.560 5 C -0.127 4.127 6 H 0.082 0.918 7 C -0.119 4.119 8 C -0.133 4.133 9 C 0.087 3.913 10 N -0.610 5.610 11 C 0.570 3.430 12 O -0.555 6.555 13 C -0.107 4.107 14 C -0.184 4.184 15 C -0.111 4.111 16 C -0.141 4.141 17 C 0.104 3.896 18 C -0.463 4.463 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.794 5.794 22 Si 0.909 3.091 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.199 4.199 27 C 0.117 3.883 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.373 0.627 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.282 0.718 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 5.761 -12.774 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.094 3.906 3 C -0.240 4.240 4 O -0.366 6.366 5 C -0.147 4.147 6 H 0.100 0.900 7 C -0.156 4.156 8 C -0.171 4.171 9 C -0.035 4.035 10 N -0.343 5.343 11 C 0.362 3.638 12 O -0.434 6.434 13 C -0.110 4.110 14 C -0.205 4.205 15 C -0.129 4.129 16 C -0.160 4.160 17 C 0.102 3.898 18 C -0.493 4.493 19 H 0.097 0.903 20 C -0.141 4.141 21 N -0.419 5.419 22 Si 0.733 3.267 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.219 4.219 27 C -0.006 4.006 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.221 0.779 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.111 0.889 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.090 5.544 -12.856 14.043 hybrid contribution 1.325 0.281 0.650 1.502 sum 0.236 5.825 -12.206 13.527 Atomic orbital electron populations 1.21841 0.92610 1.03120 1.02490 1.21117 0.94809 0.90510 0.84122 1.22615 1.01825 0.96761 1.02821 1.86556 1.26578 1.79694 1.43786 1.22208 0.96266 1.01448 0.94730 0.89974 1.21680 0.94540 1.00967 0.98432 1.21898 1.00543 1.00324 0.94358 1.22346 0.78991 1.01705 1.00499 1.47982 1.07060 1.59258 1.19962 1.18999 0.86052 0.76632 0.82153 1.90666 1.14555 1.59877 1.78287 1.19248 0.98358 0.96834 0.96581 1.20322 1.02540 0.96087 1.01508 1.20661 0.97244 0.98545 0.96468 1.21534 0.95766 0.97879 1.00860 1.17518 0.91439 0.91573 0.89262 1.19554 1.07361 0.94985 1.27382 0.90263 1.25886 0.97481 0.94552 0.96165 1.69792 1.32165 1.05355 1.34593 0.86301 0.79128 0.80181 0.81088 1.19242 1.20288 1.18585 1.21178 0.99341 1.01961 0.99389 1.21616 0.99391 0.96202 0.83392 0.90660 0.91990 0.91747 0.91854 0.91954 0.91196 0.77913 0.91404 0.92079 0.90614 0.91400 0.91927 0.85853 0.88719 0.88641 0.86008 0.90714 0.87897 0.88931 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.36 37.16 0.31 -1.18 16 2 C 0.14 1.37 0.94 -90.62 -0.08 1.28 16 3 C -0.18 -1.55 8.09 37.16 0.30 -1.25 16 4 O -0.56 -5.87 12.97 -35.23 -0.46 -6.33 16 5 C -0.13 -1.46 1.94 -90.48 -0.18 -1.64 16 6 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.12 -1.20 4.46 -26.67 -0.12 -1.32 16 8 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 9 C 0.09 1.31 5.21 -3.71 -0.02 1.29 16 10 N -0.61 -10.24 2.97 -173.86 -0.52 -10.76 16 11 C 0.57 11.93 7.29 -12.31 -0.09 11.84 16 12 O -0.56 -12.89 16.43 5.32 0.09 -12.81 16 13 C -0.11 -2.41 5.19 -105.04 -0.54 -2.95 16 14 C -0.18 -4.20 9.70 -38.92 -0.38 -4.57 16 15 C -0.11 -2.51 10.01 -39.72 -0.40 -2.91 16 16 C -0.14 -3.46 8.69 -38.81 -0.34 -3.80 16 17 C 0.10 2.59 5.57 -106.87 -0.59 2.00 16 18 C -0.46 -11.41 9.05 -37.73 -0.34 -11.75 16 19 H 0.08 1.88 7.90 -52.49 -0.41 1.46 16 20 C 0.08 1.81 5.15 -17.35 -0.09 1.72 16 21 N -0.79 -19.22 10.94 55.55 0.61 -18.61 16 22 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 26 C -0.20 -4.51 7.06 -38.44 -0.27 -4.78 16 27 C 0.12 1.61 4.87 -3.71 -0.02 1.59 16 28 H 0.07 0.75 6.48 -51.93 -0.34 0.42 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.48 6.38 -51.93 -0.33 0.15 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.59 6.46 -51.93 -0.34 0.25 16 34 H 0.37 2.73 7.52 45.56 0.34 3.08 16 35 H 0.07 0.63 6.42 -51.93 -0.33 0.29 16 36 H 0.06 0.51 6.85 -51.93 -0.36 0.16 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.12 2.22 4.21 -51.93 -0.22 2.00 16 41 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 44 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 45 H 0.10 2.16 6.56 -52.49 -0.34 1.82 16 46 H 0.09 1.40 5.59 -51.93 -0.29 1.11 16 47 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -28.34 360.14 -9.10 -37.44 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.21 Total: 11.28 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -3.01 Total: -18.25 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 0.09 Total: -29.37 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.37 Total: -19.13 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.34 -9.10 -37.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832496833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.314 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds