Wall clock time and date at job start Tue Mar 31 2020 12:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 O 1.42899 * 109.47227 * 239.99609 * 2 1 3 5 5 C 1.53002 * 109.46958 * 119.99869 * 2 1 3 6 6 H 1.09005 * 109.52557 * 65.07940 * 5 2 1 7 7 C 1.53071 * 109.62331 * 185.10436 * 5 2 1 8 8 C 1.53044 * 109.65922 * 181.16911 * 7 5 2 9 9 C 1.53191 * 109.31268 * 298.70001 * 8 7 5 10 10 N 1.46930 * 108.77324 * 54.64010 * 9 8 7 11 11 C 1.34776 * 120.63370 * 126.36716 * 10 9 8 12 12 O 1.21551 * 119.99892 * 175.72452 * 11 10 9 13 13 C 1.47883 * 119.99813 * 355.72662 * 11 10 9 14 14 C 1.39921 * 120.02552 * 226.14202 * 13 11 10 15 15 C 1.38328 * 120.36118 * 179.97438 * 14 13 11 16 16 C 1.37759 * 120.40744 * 0.02562 * 15 14 13 17 17 C 1.40749 * 120.04206 * 0.02562 * 16 15 14 18 18 C 1.41436 * 120.17703 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00259 * 205.04738 * 18 17 16 20 20 C 1.39936 * 120.00030 * 25.03791 * 18 17 16 21 21 N 1.30824 * 120.00195 * 17.10007 * 20 18 17 22 22 Si 1.86804 * 120.00034 * 197.09160 * 20 18 17 23 23 H 1.48499 * 109.47095 * 90.00729 * 22 20 18 24 24 H 1.48503 * 109.47001 * 210.00371 * 22 20 18 25 25 H 1.48495 * 109.47099 * 330.00189 * 22 20 18 26 26 C 1.38999 * 120.02507 * 45.87510 * 13 11 10 27 27 C 1.46930 * 118.73446 * 306.38217 * 10 9 8 28 28 H 1.08997 * 109.47345 * 300.00188 * 1 2 3 29 29 H 1.08995 * 109.46992 * 60.00072 * 1 2 3 30 30 H 1.09001 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47297 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47100 * 299.99862 * 3 2 1 33 33 H 1.09007 * 109.47113 * 60.00244 * 3 2 1 34 34 H 0.96701 * 113.99743 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.34715 * 61.15056 * 7 5 2 36 36 H 1.08993 * 109.44534 * 301.25615 * 7 5 2 37 37 H 1.09002 * 109.49809 * 178.75104 * 8 7 5 38 38 H 1.08998 * 109.49681 * 58.65398 * 8 7 5 39 39 H 1.08993 * 109.58988 * 294.84888 * 9 8 7 40 40 H 1.08998 * 109.58521 * 174.41953 * 9 8 7 41 41 H 1.07995 * 119.81718 * 0.02562 * 14 13 11 42 42 H 1.07992 * 119.79390 * 180.02562 * 15 14 13 43 43 H 1.08004 * 119.97777 * 180.02562 * 16 15 14 44 44 H 0.97003 * 120.00597 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.20117 * 359.97438 * 26 13 11 46 46 H 1.09006 * 109.58415 * 173.39912 * 27 10 9 47 47 H 1.08997 * 109.58777 * 293.68206 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 1.7532 -1.7720 1.2059 7 6 3.5652 -0.6131 1.3186 8 6 4.0787 -1.3591 2.5524 9 6 3.4909 -0.7178 3.8133 10 7 2.0269 -0.6897 3.6910 11 6 1.2470 -1.2174 4.6553 12 8 0.0378 -1.1192 4.5804 13 6 1.8625 -1.9156 5.8044 14 6 1.3575 -3.1507 6.2255 15 6 1.9282 -3.8102 7.2992 16 6 2.9997 -3.2587 7.9666 17 6 3.5207 -2.0166 7.5583 18 6 4.6211 -1.4480 8.2411 19 1 4.7721 -0.3788 8.2259 20 6 5.5140 -2.2709 8.9367 21 7 5.5436 -3.5561 8.6943 22 14 6.6638 -1.5341 10.2113 23 1 6.0030 -1.5483 11.5411 24 1 7.9138 -2.3337 10.2713 25 1 6.9888 -0.1350 9.8348 26 6 2.9467 -1.3481 6.4637 27 6 1.4294 -0.0758 2.4973 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8901 34 1 2.9703 -0.7122 -1.2326 35 1 3.8502 0.4369 1.3846 36 1 4.0013 -1.0521 0.4213 37 1 5.1665 -1.2993 2.5871 38 1 3.7729 -2.4040 2.4992 39 1 3.8686 0.2995 3.9159 40 1 3.7733 -1.3046 4.6873 41 1 0.5181 -3.5920 5.7088 42 1 1.5314 -4.7632 7.6161 43 1 3.4402 -3.7798 8.8038 44 1 6.1628 -4.1265 9.1761 45 1 3.3428 -0.3973 6.1392 46 1 0.3517 -0.2391 2.5031 47 1 1.6369 0.9942 2.4940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832496833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:28 Heat of formation + Delta-G solvation = -92.981934 kcal Electronic energy + Delta-G solvation = -27343.307390 eV Core-core repulsion = 23682.355670 eV Total energy + Delta-G solvation = -3660.951719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66842 -40.10349 -38.83454 -37.54795 -35.55993 -34.33205 -33.33175 -31.93195 -31.72736 -30.19499 -28.43851 -27.25938 -26.62224 -24.91842 -23.74729 -22.66041 -22.26298 -20.97093 -20.03088 -19.07375 -18.07122 -17.46733 -17.39991 -16.79069 -16.60129 -16.28413 -15.84101 -15.65637 -15.41837 -15.36444 -14.88371 -14.72658 -14.37670 -14.25921 -13.98686 -13.70274 -13.50842 -13.46345 -13.18182 -13.00866 -12.86721 -12.80504 -12.59959 -12.55003 -12.35797 -12.23648 -12.12951 -11.96892 -11.80353 -11.75521 -11.37731 -11.15966 -11.06267 -10.92897 -10.61309 -9.70593 -9.44480 -9.34633 -8.64599 -6.37457 0.52794 0.91234 1.42573 1.50715 1.54875 1.78755 2.06511 2.22790 2.72127 3.29342 3.52627 3.60562 3.65813 3.81158 3.85388 4.05229 4.13279 4.17689 4.23942 4.33038 4.37583 4.51684 4.57993 4.62465 4.72109 4.80005 4.85083 4.88129 4.92350 4.96712 4.98694 5.02919 5.03712 5.09462 5.16188 5.16854 5.28821 5.31379 5.33943 5.46234 5.47064 5.62142 5.79153 5.98209 6.01723 6.19695 6.34238 6.60265 6.86296 6.89112 6.92371 7.12788 8.32289 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.003348 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.918630 B = 8362.176274 C = 9102.251290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.141 3.859 3 C -0.179 4.179 4 O -0.572 6.572 5 C -0.118 4.118 6 H 0.056 0.944 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.082 3.918 10 N -0.600 5.600 11 C 0.564 3.436 12 O -0.587 6.587 13 C -0.112 4.112 14 C -0.199 4.199 15 C -0.109 4.109 16 C -0.165 4.165 17 C 0.080 3.920 18 C -0.491 4.491 19 H 0.082 0.918 20 C 0.040 3.960 21 N -0.821 5.821 22 Si 0.980 3.020 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.256 1.256 26 C -0.192 4.192 27 C 0.113 3.887 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.388 0.612 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.290 0.710 45 H 0.117 0.883 46 H 0.075 0.925 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 7.469 -14.054 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.100 3.900 3 C -0.236 4.236 4 O -0.381 6.381 5 C -0.138 4.138 6 H 0.074 0.926 7 C -0.150 4.150 8 C -0.167 4.167 9 C -0.039 4.039 10 N -0.331 5.331 11 C 0.355 3.645 12 O -0.469 6.469 13 C -0.115 4.115 14 C -0.219 4.219 15 C -0.127 4.127 16 C -0.185 4.185 17 C 0.078 3.922 18 C -0.520 4.520 19 H 0.100 0.900 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.194 1.194 25 H -0.179 1.179 26 C -0.212 4.212 27 C -0.009 4.009 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.238 0.762 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.100 0.900 45 H 0.134 0.866 46 H 0.093 0.907 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.662 7.257 -14.178 15.941 hybrid contribution 0.771 -0.280 0.964 1.266 sum 1.433 6.977 -13.214 15.011 Atomic orbital electron populations 1.21883 0.93394 1.02236 1.02994 1.21026 0.94331 0.91449 0.83163 1.22581 1.02809 0.95044 1.03191 1.86542 1.28112 1.79879 1.43537 1.22115 0.97460 0.99869 0.94341 0.92593 1.21687 0.93022 1.02069 0.98191 1.21869 1.01601 0.99182 0.94043 1.22434 0.77890 1.02739 1.00884 1.48032 1.07685 1.57645 1.19703 1.18820 0.85863 0.77134 0.82724 1.90641 1.15660 1.61474 1.79108 1.19507 0.98062 0.96822 0.97122 1.20512 1.02960 0.96615 1.01825 1.20864 0.96555 0.99265 0.96024 1.21508 0.96976 0.98553 1.01454 1.17851 0.92132 0.92123 0.90095 1.19805 1.08028 0.95375 1.28762 0.90001 1.26684 0.98708 0.94751 0.97418 1.69842 1.32939 1.06560 1.35319 0.85228 0.77100 0.79553 0.78041 1.19153 1.19387 1.17946 1.21282 0.99092 1.02220 0.98628 1.21856 0.98521 0.97524 0.82961 0.90595 0.91072 0.93381 0.90257 0.91372 0.91089 0.76223 0.89317 0.89521 0.88630 0.93415 0.89612 0.88938 0.88183 0.86461 0.87223 0.89969 0.86561 0.90674 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.36 71.98 0.60 -2.33 16 2 C 0.14 2.53 0.94 -10.80 -0.01 2.52 16 3 C -0.18 -2.38 8.09 71.98 0.58 -1.80 16 4 O -0.57 -10.52 12.97 -148.98 -1.93 -12.45 16 5 C -0.12 -2.52 1.94 -10.70 -0.02 -2.54 16 6 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 7 C -0.11 -1.90 4.46 30.63 0.14 -1.76 16 8 C -0.13 -2.94 6.08 30.67 0.19 -2.75 16 9 C 0.08 2.38 5.21 86.36 0.45 2.83 16 10 N -0.60 -19.84 2.97 -822.25 -2.45 -22.28 16 11 C 0.56 23.98 7.29 86.80 0.63 24.61 16 12 O -0.59 -27.89 16.43 -3.88 -0.06 -27.95 16 13 C -0.11 -5.15 5.19 -20.13 -0.10 -5.26 16 14 C -0.20 -9.29 9.70 22.70 0.22 -9.07 16 15 C -0.11 -5.06 10.01 22.18 0.22 -4.84 16 16 C -0.17 -8.38 8.69 22.77 0.20 -8.18 16 17 C 0.08 4.08 5.57 -21.32 -0.12 3.97 16 18 C -0.49 -24.47 9.05 23.47 0.21 -24.26 16 19 H 0.08 3.90 7.90 -2.91 -0.02 3.88 16 20 C 0.04 1.88 5.15 85.25 0.44 2.32 16 21 N -0.82 -40.19 10.94 21.82 0.24 -39.95 16 22 Si 0.98 35.66 29.59 68.60 2.03 37.69 16 23 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 24 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 25 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 26 C -0.19 -8.90 7.06 23.01 0.16 -8.74 16 27 C 0.11 2.98 4.87 86.36 0.42 3.40 16 28 H 0.08 1.47 6.48 -2.39 -0.02 1.45 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 0.82 6.38 -2.39 -0.02 0.80 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.94 6.46 -2.38 -0.02 0.93 16 34 H 0.39 4.33 7.52 -74.06 -0.56 3.77 16 35 H 0.09 1.20 6.42 -2.39 -0.02 1.19 16 36 H 0.09 1.09 6.85 -2.39 -0.02 1.07 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 3.33 4.21 -2.39 -0.01 3.32 16 41 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.11 5.74 6.16 -2.91 -0.02 5.73 16 44 H 0.29 12.83 8.30 -92.71 -0.77 12.06 16 45 H 0.12 4.92 6.56 -2.91 -0.02 4.90 16 46 H 0.07 2.28 5.59 -2.38 -0.01 2.27 16 47 H 0.09 1.93 6.35 -2.39 -0.02 1.91 16 Total: -1.00 -62.87 360.14 2.47 -60.40 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: 0.44 Total: 36.45 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.21 Total: -31.90 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -2.21 Total: -62.24 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -2.00 Total: -40.41 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -62.87 2.47 -60.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832496833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.586 kcal (2) G-P(sol) polarization free energy of solvation -62.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds