Wall clock time and date at job start Tue Mar 31 2020 12:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46736 * 2 1 4 4 O 1.42902 * 109.47307 * 240.00207 * 2 1 3 5 5 C 1.53005 * 109.47316 * 119.99823 * 2 1 3 6 6 H 1.08997 * 109.49465 * 299.93659 * 5 2 1 7 7 C 1.53042 * 109.49635 * 179.83821 * 5 2 1 8 8 C 1.53044 * 109.53460 * 178.68200 * 7 5 2 9 9 C 1.52757 * 109.38137 * 61.24663 * 8 7 5 10 10 N 1.46933 * 109.00730 * 305.58491 * 9 8 7 11 11 C 1.34772 * 120.62838 * 233.58501 * 10 9 8 12 12 O 1.21551 * 120.00104 * 183.02659 * 11 10 9 13 13 C 1.47885 * 120.00492 * 3.02606 * 11 10 9 14 14 C 1.39924 * 120.02649 * 134.88535 * 13 11 10 15 15 C 1.38325 * 120.36100 * 180.30028 * 14 13 11 16 16 C 1.37760 * 120.40886 * 359.96012 * 15 14 13 17 17 C 1.40745 * 120.04247 * 0.04451 * 16 15 14 18 18 C 1.41435 * 120.18110 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99794 * 151.11051 * 18 17 16 20 20 C 1.39930 * 120.00050 * 331.11375 * 18 17 16 21 21 N 1.30822 * 120.00469 * 163.74418 * 20 18 17 22 22 Si 1.86807 * 119.99944 * 343.74561 * 20 18 17 23 23 H 1.48498 * 109.47065 * 94.33841 * 22 20 18 24 24 H 1.48506 * 109.47134 * 214.33766 * 22 20 18 25 25 H 1.48497 * 109.47057 * 334.33587 * 22 20 18 26 26 C 1.38997 * 120.02680 * 315.17154 * 13 11 10 27 27 C 1.46922 * 118.73762 * 53.30845 * 10 9 8 28 28 H 1.08995 * 109.47272 * 299.99509 * 1 2 3 29 29 H 1.08995 * 109.47144 * 60.00131 * 1 2 3 30 30 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46976 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47197 * 299.99836 * 3 2 1 33 33 H 1.08995 * 109.46839 * 60.00225 * 3 2 1 34 34 H 0.96693 * 113.99574 * 60.00064 * 4 2 1 35 35 H 1.08994 * 109.46353 * 298.70559 * 7 5 2 36 36 H 1.08997 * 109.45567 * 58.68323 * 7 5 2 37 37 H 1.09002 * 109.49274 * 181.31430 * 8 7 5 38 38 H 1.08991 * 109.49941 * 301.38510 * 8 7 5 39 39 H 1.08994 * 109.51404 * 185.70427 * 9 8 7 40 40 H 1.09007 * 109.43620 * 65.41986 * 9 8 7 41 41 H 1.07999 * 119.82167 * 0.26562 * 14 13 11 42 42 H 1.07991 * 119.79826 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.97520 * 180.02562 * 16 15 14 44 44 H 0.96999 * 120.00940 * 180.02562 * 21 20 18 45 45 H 1.07999 * 120.19389 * 359.74062 * 26 13 11 46 46 H 1.09009 * 109.58620 * 66.43371 * 27 10 9 47 47 H 1.09005 * 109.58662 * 186.85755 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 1 1.6779 -0.2070 2.1395 7 6 3.5705 -0.7251 1.2478 8 6 4.0817 -1.4174 2.5133 9 6 3.5943 -2.8650 2.5314 10 7 2.1325 -2.8796 2.3837 11 6 1.3589 -3.5309 3.2747 12 8 0.1555 -3.5822 3.1116 13 6 1.9741 -4.1831 4.4507 14 6 1.4014 -4.0263 5.7177 15 6 1.9745 -4.6282 6.8234 16 6 3.1149 -5.3895 6.6902 17 6 3.7053 -5.5585 5.4238 18 6 4.8764 -6.3391 5.2838 19 1 5.0732 -6.8558 4.3561 20 6 5.7801 -6.4419 6.3473 21 7 6.6807 -7.3907 6.3511 22 14 5.7004 -5.2241 7.7616 23 1 4.8726 -5.7907 8.8566 24 1 7.0723 -4.9592 8.2646 25 1 5.0931 -3.9545 7.2881 26 6 3.1250 -4.9477 4.2993 27 6 1.5298 -2.1656 1.2499 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.7210 -0.2700 -1.9979 35 1 3.9314 -1.2606 0.3698 36 1 3.9361 0.3015 1.2228 37 1 5.1715 -1.3991 2.5229 38 1 3.7013 -0.8965 3.3919 39 1 3.8707 -3.3304 3.4774 40 1 4.0504 -3.4116 1.7059 41 1 0.5073 -3.4316 5.8331 42 1 1.5252 -4.5007 7.7971 43 1 3.5563 -5.8566 7.5582 44 1 7.3069 -7.4623 7.0884 45 1 3.5706 -5.0710 3.3233 46 1 1.8142 -2.6540 0.3177 47 1 0.4445 -2.1697 1.3507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832496834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:33 Heat of formation + Delta-G solvation = -75.058510 kcal Electronic energy + Delta-G solvation = -27423.933135 eV Core-core repulsion = 23763.758633 eV Total energy + Delta-G solvation = -3660.174501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.31386 -38.87517 -37.35683 -36.41810 -33.70854 -33.31371 -31.98275 -30.86222 -30.53300 -29.25919 -27.84481 -25.40978 -25.06110 -23.78442 -22.43085 -21.09171 -20.77877 -20.03649 -19.03849 -17.50263 -16.62565 -16.32058 -16.06771 -15.44201 -15.39987 -14.77473 -14.64162 -14.49137 -14.21959 -13.89718 -13.69409 -13.53311 -13.19063 -13.05990 -12.79066 -12.56410 -12.51168 -12.32908 -12.04483 -12.02604 -11.92099 -11.64491 -11.37856 -11.11635 -11.02088 -10.82357 -10.74874 -10.61059 -10.53527 -10.32249 -10.01786 -9.93923 -9.74653 -9.40804 -9.07798 -8.31786 -7.80390 -7.74924 -7.02478 -4.59353 2.06007 2.49633 3.04042 3.15082 3.22367 3.28586 3.49762 3.89677 4.01181 4.40763 4.46894 4.53698 4.70946 4.92891 5.05315 5.15765 5.23924 5.25837 5.28688 5.34665 5.43681 5.47235 5.53769 5.66715 5.70155 5.83064 5.87268 5.91623 5.93311 5.99743 6.07712 6.12758 6.14592 6.17423 6.27692 6.33752 6.46074 6.55408 6.70637 6.86156 6.97039 7.20659 7.40022 7.47291 7.49468 7.70695 7.82256 7.89667 8.24154 8.48853 8.66767 8.68775 9.99680 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.003549 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.338796 B = 7886.575334 C = 8467.021200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.133 3.867 3 C -0.179 4.179 4 O -0.555 6.555 5 C -0.085 4.085 6 H 0.082 0.918 7 C -0.111 4.111 8 C -0.136 4.136 9 C 0.086 3.914 10 N -0.609 5.609 11 C 0.568 3.432 12 O -0.554 6.554 13 C -0.094 4.094 14 C -0.192 4.192 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.087 3.913 18 C -0.445 4.445 19 H 0.092 0.908 20 C 0.084 3.916 21 N -0.806 5.806 22 Si 0.911 3.089 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.243 1.243 26 C -0.181 4.181 27 C 0.120 3.880 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.372 0.628 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.286 0.714 45 H 0.112 0.888 46 H 0.072 0.928 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 15.584 -9.795 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.093 3.907 3 C -0.236 4.236 4 O -0.361 6.361 5 C -0.104 4.104 6 H 0.100 0.900 7 C -0.149 4.149 8 C -0.174 4.174 9 C -0.036 4.036 10 N -0.341 5.341 11 C 0.359 3.641 12 O -0.432 6.432 13 C -0.097 4.097 14 C -0.212 4.212 15 C -0.100 4.100 16 C -0.241 4.241 17 C 0.084 3.916 18 C -0.473 4.473 19 H 0.110 0.890 20 C -0.136 4.136 21 N -0.430 5.430 22 Si 0.738 3.262 23 H -0.196 1.196 24 H -0.219 1.219 25 H -0.166 1.166 26 C -0.201 4.201 27 C -0.003 4.003 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.219 0.781 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.091 0.909 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.361 14.988 -9.367 18.204 hybrid contribution -0.128 0.809 0.265 0.861 sum -4.489 15.797 -9.102 18.776 Atomic orbital electron populations 1.22561 0.95771 1.03303 1.02382 1.21140 0.92419 0.91068 0.86119 1.22531 1.02552 0.96207 1.02324 1.86589 1.77030 1.56999 1.15437 1.21523 0.96868 0.96314 0.95736 0.89999 1.21576 0.94076 1.00670 0.98556 1.21879 1.01008 0.96357 0.98200 1.22255 0.79293 0.96932 1.05100 1.48000 1.07324 1.52278 1.26514 1.18889 0.85987 0.77179 0.82070 1.90675 1.14830 1.61243 1.76487 1.19401 0.96778 1.01082 0.92454 1.20310 1.01948 1.07629 0.91358 1.20547 0.95758 0.96810 0.96894 1.21188 0.98746 1.06449 0.97721 1.17636 0.93034 0.90088 0.90844 1.19484 1.02641 1.24129 1.01057 0.88961 1.26155 0.94048 0.94740 0.98611 1.69669 1.14941 1.26759 1.31618 0.86327 0.76613 0.82929 0.80300 1.19647 1.21862 1.16605 1.21258 0.97180 1.02798 0.98868 1.21550 0.99164 0.90558 0.89002 0.91535 0.92432 0.91190 0.91319 0.92485 0.91649 0.78080 0.90924 0.91939 0.90572 0.91679 0.86340 0.91584 0.88116 0.88147 0.87910 0.90317 0.87059 0.90948 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.47 37.16 0.31 -1.28 16 2 C 0.13 1.23 0.77 -90.61 -0.07 1.16 16 3 C -0.18 -1.34 8.47 37.16 0.31 -1.03 16 4 O -0.55 -5.20 11.57 -35.23 -0.41 -5.61 16 5 C -0.09 -0.99 1.76 -90.50 -0.16 -1.15 16 6 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 7 C -0.11 -1.25 4.69 -26.69 -0.13 -1.38 16 8 C -0.14 -1.72 6.06 -26.83 -0.16 -1.89 16 9 C 0.09 1.33 5.13 -3.93 -0.02 1.31 16 10 N -0.61 -10.30 2.98 -174.13 -0.52 -10.82 16 11 C 0.57 11.66 7.30 -12.31 -0.09 11.57 16 12 O -0.55 -12.63 16.41 5.32 0.09 -12.54 16 13 C -0.09 -2.04 5.19 -105.04 -0.55 -2.59 16 14 C -0.19 -4.14 9.69 -38.92 -0.38 -4.52 16 15 C -0.08 -1.74 10.01 -39.72 -0.40 -2.14 16 16 C -0.22 -5.15 7.09 -38.81 -0.28 -5.43 16 17 C 0.09 2.10 5.15 -106.87 -0.55 1.55 16 18 C -0.44 -11.43 9.59 -37.73 -0.36 -11.79 16 19 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 20 C 0.08 2.10 5.43 -17.35 -0.09 2.00 16 21 N -0.81 -20.72 13.93 55.55 0.77 -19.95 16 22 Si 0.91 19.84 24.43 -169.99 -4.15 15.69 16 23 H -0.27 -5.75 6.67 56.52 0.38 -5.38 16 24 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.24 -5.34 6.76 56.52 0.38 -4.96 16 26 C -0.18 -4.02 7.05 -38.44 -0.27 -4.29 16 27 C 0.12 1.74 5.10 -3.72 -0.02 1.72 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 31 H 0.07 0.54 6.40 -51.92 -0.33 0.21 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.37 2.06 9.04 45.56 0.41 2.48 16 35 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 36 H 0.06 0.61 6.36 -51.93 -0.33 0.28 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.12 2.08 4.25 -51.93 -0.22 1.86 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.10 2.37 4.42 -52.49 -0.23 2.14 16 44 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 45 H 0.11 2.32 6.55 -52.49 -0.34 1.98 16 46 H 0.07 1.06 7.54 -51.92 -0.39 0.67 16 47 H 0.09 1.38 5.64 -51.93 -0.29 1.08 16 LS Contribution 358.87 15.07 5.41 5.41 Total: -1.00 -29.01 358.87 -8.00 -37.01 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.30 Total: 8.99 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -2.89 Total: -18.17 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.25 Total: -30.77 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.32 Total: -18.15 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.15 Total: 15.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.01 -8.00 -37.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832496834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.051 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds