Wall clock time and date at job start Tue Mar 31 2020 12:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46736 * 2 1 4 4 O 1.42902 * 109.47307 * 240.00207 * 2 1 3 5 5 C 1.53005 * 109.47316 * 119.99823 * 2 1 3 6 6 H 1.08997 * 109.49465 * 299.93659 * 5 2 1 7 7 C 1.53042 * 109.49635 * 179.83821 * 5 2 1 8 8 C 1.53044 * 109.53460 * 178.68200 * 7 5 2 9 9 C 1.52757 * 109.38137 * 61.24663 * 8 7 5 10 10 N 1.46933 * 109.00730 * 305.58491 * 9 8 7 11 11 C 1.34772 * 120.62838 * 233.58501 * 10 9 8 12 12 O 1.21551 * 120.00104 * 183.02659 * 11 10 9 13 13 C 1.47885 * 120.00492 * 3.02606 * 11 10 9 14 14 C 1.39924 * 120.02649 * 134.88535 * 13 11 10 15 15 C 1.38325 * 120.36100 * 180.30028 * 14 13 11 16 16 C 1.37760 * 120.40886 * 359.96012 * 15 14 13 17 17 C 1.40745 * 120.04247 * 0.04451 * 16 15 14 18 18 C 1.41435 * 120.18110 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99794 * 151.11051 * 18 17 16 20 20 C 1.39930 * 120.00050 * 331.11375 * 18 17 16 21 21 N 1.30822 * 120.00469 * 163.74418 * 20 18 17 22 22 Si 1.86807 * 119.99944 * 343.74561 * 20 18 17 23 23 H 1.48498 * 109.47065 * 94.33841 * 22 20 18 24 24 H 1.48506 * 109.47134 * 214.33766 * 22 20 18 25 25 H 1.48497 * 109.47057 * 334.33587 * 22 20 18 26 26 C 1.38997 * 120.02680 * 315.17154 * 13 11 10 27 27 C 1.46922 * 118.73762 * 53.30845 * 10 9 8 28 28 H 1.08995 * 109.47272 * 299.99509 * 1 2 3 29 29 H 1.08995 * 109.47144 * 60.00131 * 1 2 3 30 30 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46976 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47197 * 299.99836 * 3 2 1 33 33 H 1.08995 * 109.46839 * 60.00225 * 3 2 1 34 34 H 0.96693 * 113.99574 * 60.00064 * 4 2 1 35 35 H 1.08994 * 109.46353 * 298.70559 * 7 5 2 36 36 H 1.08997 * 109.45567 * 58.68323 * 7 5 2 37 37 H 1.09002 * 109.49274 * 181.31430 * 8 7 5 38 38 H 1.08991 * 109.49941 * 301.38510 * 8 7 5 39 39 H 1.08994 * 109.51404 * 185.70427 * 9 8 7 40 40 H 1.09007 * 109.43620 * 65.41986 * 9 8 7 41 41 H 1.07999 * 119.82167 * 0.26562 * 14 13 11 42 42 H 1.07991 * 119.79826 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.97520 * 180.02562 * 16 15 14 44 44 H 0.96999 * 120.00940 * 180.02562 * 21 20 18 45 45 H 1.07999 * 120.19389 * 359.74062 * 26 13 11 46 46 H 1.09009 * 109.58620 * 66.43371 * 27 10 9 47 47 H 1.09005 * 109.58662 * 186.85755 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2493 6 1 1.6779 -0.2070 2.1395 7 6 3.5705 -0.7251 1.2478 8 6 4.0817 -1.4174 2.5133 9 6 3.5943 -2.8650 2.5314 10 7 2.1325 -2.8796 2.3837 11 6 1.3589 -3.5309 3.2747 12 8 0.1555 -3.5822 3.1116 13 6 1.9741 -4.1831 4.4507 14 6 1.4014 -4.0263 5.7177 15 6 1.9745 -4.6282 6.8234 16 6 3.1149 -5.3895 6.6902 17 6 3.7053 -5.5585 5.4238 18 6 4.8764 -6.3391 5.2838 19 1 5.0732 -6.8558 4.3561 20 6 5.7801 -6.4419 6.3473 21 7 6.6807 -7.3907 6.3511 22 14 5.7004 -5.2241 7.7616 23 1 4.8726 -5.7907 8.8566 24 1 7.0723 -4.9592 8.2646 25 1 5.0931 -3.9545 7.2881 26 6 3.1250 -4.9477 4.2993 27 6 1.5298 -2.1656 1.2499 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.7210 -0.2700 -1.9979 35 1 3.9314 -1.2606 0.3698 36 1 3.9361 0.3015 1.2228 37 1 5.1715 -1.3991 2.5229 38 1 3.7013 -0.8965 3.3919 39 1 3.8707 -3.3304 3.4774 40 1 4.0504 -3.4116 1.7059 41 1 0.5073 -3.4316 5.8331 42 1 1.5252 -4.5007 7.7971 43 1 3.5563 -5.8566 7.5582 44 1 7.3069 -7.4623 7.0884 45 1 3.5706 -5.0710 3.3233 46 1 1.8142 -2.6540 0.3177 47 1 0.4445 -2.1697 1.3507 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832496834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:32 Heat of formation + Delta-G solvation = -93.088052 kcal Electronic energy + Delta-G solvation = -27424.714954 eV Core-core repulsion = 23763.758633 eV Total energy + Delta-G solvation = -3660.956321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65093 -40.04217 -38.99865 -37.62857 -35.55023 -34.37046 -33.04159 -32.48704 -32.16741 -30.46379 -28.57826 -27.18299 -26.43343 -24.88679 -23.91833 -22.52006 -22.23931 -20.98462 -20.52306 -19.12411 -17.88937 -17.80658 -17.42712 -16.86408 -16.57280 -16.43126 -15.95588 -15.56832 -15.40106 -15.10544 -15.08461 -14.62219 -14.48839 -14.36081 -14.19692 -13.97761 -13.81079 -13.70959 -13.36949 -13.06629 -12.90996 -12.76288 -12.68524 -12.61420 -12.38416 -12.26912 -12.00783 -11.75687 -11.70438 -11.59438 -11.51865 -11.29971 -11.15446 -10.78497 -10.73177 -9.74287 -9.59078 -9.47788 -8.90096 -6.53946 0.30345 0.71898 1.28831 1.42583 1.50161 1.71882 1.99808 2.12701 2.58439 3.34017 3.40623 3.49870 3.66210 3.76725 3.95981 4.03332 4.11642 4.16748 4.25986 4.37016 4.37238 4.41172 4.52984 4.58062 4.63731 4.70990 4.80200 4.83271 4.87799 4.89676 4.92475 4.95250 5.02199 5.08039 5.12580 5.15118 5.19756 5.23791 5.40019 5.43847 5.48726 5.56879 5.63516 5.73624 5.84368 6.07649 6.30422 6.31804 6.63171 6.76992 6.97376 7.08328 8.17605 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.003549 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.338796 B = 7886.575334 C = 8467.021200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.138 3.862 3 C -0.174 4.174 4 O -0.571 6.571 5 C -0.082 4.082 6 H 0.078 0.922 7 C -0.104 4.104 8 C -0.131 4.131 9 C 0.082 3.918 10 N -0.600 5.600 11 C 0.563 3.437 12 O -0.583 6.583 13 C -0.102 4.102 14 C -0.188 4.188 15 C -0.079 4.079 16 C -0.232 4.232 17 C 0.073 3.927 18 C -0.476 4.476 19 H 0.061 0.939 20 C 0.050 3.950 21 N -0.846 5.846 22 Si 0.963 3.037 23 H -0.258 1.258 24 H -0.279 1.279 25 H -0.246 1.246 26 C -0.177 4.177 27 C 0.120 3.880 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.390 0.610 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.295 0.705 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 18.440 -9.814 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.097 3.903 3 C -0.231 4.231 4 O -0.379 6.379 5 C -0.102 4.102 6 H 0.096 0.904 7 C -0.141 4.141 8 C -0.169 4.169 9 C -0.039 4.039 10 N -0.331 5.331 11 C 0.353 3.647 12 O -0.465 6.465 13 C -0.105 4.105 14 C -0.208 4.208 15 C -0.097 4.097 16 C -0.251 4.251 17 C 0.070 3.930 18 C -0.505 4.505 19 H 0.079 0.921 20 C -0.165 4.165 21 N -0.471 5.471 22 Si 0.786 3.214 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.170 1.170 26 C -0.197 4.197 27 C -0.002 4.002 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.090 0.910 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.874 17.863 -9.423 20.776 hybrid contribution -0.083 -0.050 0.132 0.164 sum -4.956 17.813 -9.291 20.693 Atomic orbital electron populations 1.22548 0.95574 1.02324 1.03456 1.21039 0.92468 0.91693 0.85055 1.22478 1.02445 0.94760 1.03419 1.86541 1.77265 1.57737 1.16367 1.21509 0.97229 0.94187 0.97246 0.90395 1.21532 0.93552 1.01688 0.97349 1.21859 1.01997 0.94148 0.98936 1.22321 0.78318 0.99162 1.04139 1.48077 1.07872 1.51037 1.26077 1.18764 0.85790 0.77630 0.82487 1.90655 1.15839 1.62673 1.77302 1.19628 0.96518 1.00872 0.93469 1.20655 1.01975 1.06806 0.91316 1.20889 0.94802 0.95510 0.98504 1.21339 0.99520 1.06964 0.97292 1.17746 0.92831 0.90325 0.92082 1.19436 1.04442 1.25988 1.00607 0.92128 1.26802 0.93401 0.95855 1.00478 1.69697 1.16148 1.28240 1.33047 0.85542 0.77328 0.80631 0.77894 1.18405 1.20552 1.16973 1.21305 0.97305 1.02361 0.98724 1.21686 0.98415 0.92357 0.87716 0.91607 0.90258 0.93175 0.91379 0.90637 0.91394 0.76035 0.91306 0.89680 0.88923 0.92084 0.88592 0.90808 0.86635 0.84529 0.87660 0.89448 0.86696 0.91023 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.47 71.98 0.61 -2.22 16 2 C 0.14 2.22 0.77 -10.79 -0.01 2.21 16 3 C -0.17 -2.03 8.47 71.98 0.61 -1.42 16 4 O -0.57 -9.36 11.57 -148.98 -1.72 -11.09 16 5 C -0.08 -1.78 1.76 -10.72 -0.02 -1.80 16 6 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.10 -2.09 4.69 30.62 0.14 -1.94 16 8 C -0.13 -3.10 6.06 30.53 0.19 -2.91 16 9 C 0.08 2.49 5.13 86.22 0.44 2.94 16 10 N -0.60 -20.15 2.98 -823.09 -2.45 -22.60 16 11 C 0.56 23.09 7.30 86.80 0.63 23.72 16 12 O -0.58 -26.66 16.41 -3.88 -0.06 -26.72 16 13 C -0.10 -4.39 5.19 -20.13 -0.10 -4.49 16 14 C -0.19 -7.76 9.69 22.70 0.22 -7.54 16 15 C -0.08 -3.19 10.01 22.18 0.22 -2.97 16 16 C -0.23 -10.54 7.09 22.77 0.16 -10.38 16 17 C 0.07 3.56 5.15 -21.32 -0.11 3.45 16 18 C -0.48 -25.43 9.59 23.47 0.22 -25.20 16 19 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 20 C 0.05 2.55 5.43 85.25 0.46 3.02 16 21 N -0.85 -44.65 13.93 21.82 0.30 -44.35 16 22 Si 0.96 40.38 24.43 68.60 1.68 42.06 16 23 H -0.26 -10.30 6.67 99.48 0.66 -9.63 16 24 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.25 -10.37 6.76 99.48 0.67 -9.69 16 26 C -0.18 -7.98 7.05 23.01 0.16 -7.82 16 27 C 0.12 3.41 5.10 86.36 0.44 3.85 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.98 6.56 -2.39 -0.02 0.96 16 31 H 0.07 0.82 6.40 -2.38 -0.02 0.81 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.39 3.24 9.04 -74.06 -0.67 2.57 16 35 H 0.07 1.48 7.72 -2.39 -0.02 1.46 16 36 H 0.08 1.38 6.36 -2.39 -0.02 1.37 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 3.39 4.25 -2.39 -0.01 3.38 16 40 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.14 4.49 8.06 -2.92 -0.02 4.47 16 43 H 0.11 4.71 4.42 -2.91 -0.01 4.69 16 44 H 0.29 13.97 8.30 -92.71 -0.77 13.21 16 45 H 0.12 4.96 6.55 -2.91 -0.02 4.95 16 46 H 0.07 2.06 7.54 -2.38 -0.02 2.04 16 47 H 0.07 2.36 5.64 -2.38 -0.01 2.34 16 Total: -1.00 -63.55 358.87 2.26 -61.29 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.24 Total: 30.93 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 4.28 Total: -29.52 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -2.15 Total: -66.95 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.79 Total: -37.81 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.68 Total: 42.06 kcal Total: -63.55 2.26 -61.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832496834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.798 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds