Wall clock time and date at job start Tue Mar 31 2020 12:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46755 * 2 1 4 4 O 1.42900 * 109.46805 * 240.00336 * 2 1 3 5 5 C 1.52998 * 109.47202 * 120.00189 * 2 1 3 6 6 H 1.08992 * 109.50026 * 64.93770 * 5 2 1 7 7 C 1.53045 * 109.49362 * 185.00037 * 5 2 1 8 8 C 1.53036 * 109.53443 * 181.31226 * 7 5 2 9 9 C 1.53184 * 109.31730 * 298.63454 * 8 7 5 10 10 N 1.46925 * 108.77423 * 54.63934 * 9 8 7 11 11 C 1.34774 * 120.63197 * 126.36826 * 10 9 8 12 12 O 1.21617 * 119.99712 * 185.42789 * 11 10 9 13 13 C 1.47434 * 120.00415 * 5.43370 * 11 10 9 14 14 C 1.39225 * 120.27952 * 48.82925 * 13 11 10 15 15 C 1.38222 * 120.08980 * 179.97438 * 14 13 11 16 16 C 1.38820 * 120.67870 * 0.03930 * 15 14 13 17 17 C 1.37603 * 120.56807 * 359.67709 * 16 15 14 18 18 C 1.40708 * 119.87792 * 0.57937 * 17 16 15 19 19 C 1.40891 * 120.32281 * 179.72068 * 18 17 16 20 20 H 1.08001 * 119.99725 * 210.33563 * 19 18 17 21 21 C 1.40272 * 120.00521 * 30.33722 * 19 18 17 22 22 N 1.30631 * 120.00069 * 192.43732 * 21 19 18 23 23 Si 1.86804 * 119.99713 * 12.43055 * 21 19 18 24 24 H 1.48499 * 109.47321 * 267.24076 * 23 21 19 25 25 H 1.48495 * 109.47020 * 27.24117 * 23 21 19 26 26 H 1.48501 * 109.46580 * 147.24051 * 23 21 19 27 27 C 1.46930 * 118.73837 * 306.64150 * 10 9 8 28 28 H 1.08999 * 109.47251 * 299.99548 * 1 2 3 29 29 H 1.08991 * 109.47449 * 59.99849 * 1 2 3 30 30 H 1.09011 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46548 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47050 * 300.00398 * 3 2 1 33 33 H 1.08999 * 109.46872 * 60.00220 * 3 2 1 34 34 H 0.96697 * 113.99714 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.45808 * 61.29508 * 7 5 2 36 36 H 1.08997 * 109.45011 * 301.33232 * 7 5 2 37 37 H 1.09005 * 109.49494 * 178.68054 * 8 7 5 38 38 H 1.09001 * 109.49799 * 58.59359 * 8 7 5 39 39 H 1.08997 * 109.58796 * 294.84749 * 9 8 7 40 40 H 1.09003 * 109.70612 * 174.48852 * 9 8 7 41 41 H 1.07998 * 119.95489 * 359.97438 * 14 13 11 42 42 H 1.08001 * 119.66092 * 180.02562 * 15 14 13 43 43 H 1.07996 * 119.71988 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.06228 * 180.32422 * 17 16 15 45 45 H 0.97002 * 119.99708 * 179.97438 * 22 21 19 46 46 H 1.08990 * 109.58881 * 173.14985 * 27 10 9 47 47 H 1.09008 * 109.58073 * 293.57044 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7510 -1.7713 1.2065 7 6 3.5653 -0.6136 1.3142 8 6 4.0792 -1.3626 2.5458 9 6 3.4951 -0.7220 3.8087 10 7 2.0311 -0.6904 3.6891 11 6 1.2517 -1.2178 4.6540 12 8 0.0468 -1.2747 4.4990 13 6 1.8598 -1.7257 5.8973 14 6 2.7792 -0.9492 6.5974 15 6 3.3464 -1.4290 7.7629 16 6 3.0104 -2.6850 8.2493 17 6 2.1006 -3.4732 7.5826 18 6 1.5128 -3.0105 6.3909 19 6 0.5845 -3.8122 5.6976 20 1 0.5015 -3.7361 4.6235 21 6 -0.2318 -4.7092 6.4023 22 7 -0.9122 -5.6185 5.7568 23 14 -0.3458 -4.6035 8.2639 24 1 0.6560 -5.5144 8.8737 25 1 -0.0760 -3.2092 8.6979 26 1 -1.7081 -5.0028 8.6997 27 6 1.4328 -0.0784 2.4948 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.9702 -0.7114 -1.2332 35 1 3.8527 0.4358 1.3812 36 1 3.9987 -1.0521 0.4153 37 1 5.1673 -1.3053 2.5787 38 1 3.7710 -2.4067 2.4915 39 1 3.8753 0.2942 3.9123 40 1 3.7776 -1.3087 4.6828 41 1 3.0495 0.0295 6.2292 42 1 4.0585 -0.8206 8.3006 43 1 3.4628 -3.0444 9.1617 44 1 1.8413 -4.4470 7.9712 45 1 -1.4764 -6.2390 6.2442 46 1 0.3554 -0.2426 2.5008 47 1 1.6415 0.9915 2.4891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832520312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:37 Heat of formation + Delta-G solvation = -74.243971 kcal Electronic energy + Delta-G solvation = -27917.864484 eV Core-core repulsion = 24257.725304 eV Total energy + Delta-G solvation = -3660.139180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23714 -38.75325 -37.16525 -36.05437 -33.76510 -33.17138 -32.07992 -30.58547 -30.39539 -29.09242 -27.59382 -25.75099 -24.76653 -23.74507 -22.23799 -21.26898 -21.02910 -19.42470 -18.55006 -17.46512 -17.12297 -16.46176 -15.69830 -15.38870 -14.95121 -14.83297 -14.56060 -14.42106 -14.17011 -13.98780 -13.57251 -13.37217 -13.02426 -12.72632 -12.62091 -12.41371 -12.38721 -12.17766 -12.06165 -11.92015 -11.69199 -11.63943 -11.25862 -11.13794 -10.97991 -10.89638 -10.75357 -10.72284 -10.34216 -10.16305 -10.01959 -9.83782 -9.76613 -9.26435 -8.78062 -8.10038 -7.76520 -7.70851 -7.01587 -4.56181 2.20631 2.57076 3.06051 3.17372 3.28860 3.52331 3.80239 3.93446 4.15270 4.45225 4.57672 4.65834 4.83632 4.96528 5.09372 5.20052 5.28444 5.32061 5.40550 5.50351 5.59254 5.61651 5.68767 5.76351 5.83515 5.84003 5.86309 5.90657 5.96610 5.99516 6.05762 6.12629 6.15267 6.24263 6.28595 6.37838 6.45959 6.50959 6.75930 7.02537 7.06677 7.22905 7.41231 7.53893 7.58142 7.70695 7.96431 8.11173 8.29278 8.53665 8.68608 9.14219 9.99314 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004310 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.645751 B = 6494.456550 C = 7439.856297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 C -0.182 4.182 4 O -0.559 6.559 5 C -0.128 4.128 6 H 0.084 0.916 7 C -0.116 4.116 8 C -0.135 4.135 9 C 0.107 3.893 10 N -0.620 5.620 11 C 0.582 3.418 12 O -0.533 6.533 13 C -0.242 4.242 14 C -0.044 4.044 15 C -0.256 4.256 16 C -0.062 4.062 17 C -0.236 4.236 18 C 0.121 3.879 19 C -0.407 4.407 20 H 0.093 0.907 21 C 0.082 3.918 22 N -0.794 5.794 23 Si 0.917 3.083 24 H -0.270 1.270 25 H -0.240 1.240 26 H -0.290 1.290 27 C 0.119 3.881 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.371 0.629 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.288 0.712 46 H 0.094 0.906 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 9.989 -7.137 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.095 3.905 3 C -0.239 4.239 4 O -0.366 6.366 5 C -0.147 4.147 6 H 0.102 0.898 7 C -0.154 4.154 8 C -0.173 4.173 9 C -0.016 4.016 10 N -0.356 5.356 11 C 0.374 3.626 12 O -0.409 6.409 13 C -0.247 4.247 14 C -0.063 4.063 15 C -0.275 4.275 16 C -0.081 4.081 17 C -0.255 4.255 18 C 0.116 3.884 19 C -0.434 4.434 20 H 0.111 0.889 21 C -0.139 4.139 22 N -0.416 5.416 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.164 1.164 26 H -0.218 1.218 27 C -0.004 4.004 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.219 0.781 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.456 9.670 -7.389 14.272 hybrid contribution 0.621 -0.090 0.839 1.048 sum 8.076 9.580 -6.550 14.139 Atomic orbital electron populations 1.21845 0.92542 1.03347 1.02366 1.21128 0.94891 0.90357 0.84171 1.22610 1.01634 0.96917 1.02753 1.86569 1.26393 1.79738 1.43854 1.22127 0.95934 1.01800 0.94888 0.89780 1.21643 0.94879 1.00646 0.98218 1.21909 1.00021 1.00679 0.94690 1.21784 0.80190 1.00480 0.99137 1.48086 1.06335 1.60937 1.20215 1.18464 0.86082 0.75148 0.82899 1.90710 1.14783 1.55341 1.80035 1.19332 1.08358 0.97269 0.99739 1.20728 0.93743 0.97064 0.94740 1.20250 1.08580 0.98175 1.00534 1.20693 0.96050 0.94076 0.97258 1.21029 1.03652 1.00385 1.00428 1.17438 0.90929 0.89591 0.90397 1.19564 1.13663 1.12970 0.97200 0.88879 1.26289 0.93628 0.91978 1.01996 1.69565 1.20468 1.11828 1.39788 0.86256 0.76435 0.81518 0.81375 1.19604 1.16364 1.21792 1.21464 0.99754 0.95631 0.83549 0.90644 0.92110 0.91563 0.92003 0.92045 0.91218 0.78097 0.91551 0.92175 0.91046 0.91211 0.92550 0.88185 0.88447 0.88522 0.88605 0.87874 0.90104 0.88810 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.36 37.16 0.31 -1.43 16 2 C 0.14 1.53 0.93 -90.62 -0.08 1.45 16 3 C -0.18 -1.66 8.09 37.16 0.30 -1.36 16 4 O -0.56 -6.53 12.97 -35.23 -0.46 -6.98 16 5 C -0.13 -1.65 1.93 -90.72 -0.17 -1.82 16 6 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 7 C -0.12 -1.23 4.45 -26.69 -0.12 -1.35 16 8 C -0.13 -1.65 6.08 -26.62 -0.16 -1.81 16 9 C 0.11 1.55 5.28 -3.72 -0.02 1.53 16 10 N -0.62 -10.98 2.98 -174.30 -0.52 -11.50 16 11 C 0.58 13.25 6.52 -12.52 -0.08 13.16 16 12 O -0.53 -14.10 15.26 5.26 0.08 -14.02 16 13 C -0.24 -5.62 4.86 -104.37 -0.51 -6.13 16 14 C -0.04 -0.88 7.54 -39.22 -0.30 -1.17 16 15 C -0.26 -4.95 10.03 -39.37 -0.39 -5.35 16 16 C -0.06 -1.28 10.01 -39.60 -0.40 -1.68 16 17 C -0.24 -5.53 6.98 -38.88 -0.27 -5.80 16 18 C 0.12 3.07 5.18 -106.54 -0.55 2.52 16 19 C -0.41 -11.30 8.39 -37.81 -0.32 -11.62 16 20 H 0.09 2.83 7.29 -52.49 -0.38 2.45 16 21 C 0.08 2.19 5.47 -17.30 -0.09 2.09 16 22 N -0.79 -21.47 13.92 55.56 0.77 -20.70 16 23 Si 0.92 21.07 24.39 -169.99 -4.15 16.92 16 24 H -0.27 -5.84 6.67 56.52 0.38 -5.46 16 25 H -0.24 -5.71 6.64 56.52 0.38 -5.33 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.12 1.79 4.89 -3.93 -0.02 1.77 16 28 H 0.07 0.88 6.48 -51.93 -0.34 0.55 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.06 0.49 6.38 -51.93 -0.33 0.16 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.63 6.46 -51.93 -0.34 0.29 16 34 H 0.37 3.07 7.50 45.56 0.34 3.41 16 35 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 36 H 0.06 0.54 6.83 -51.93 -0.35 0.18 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.62 5.13 -51.93 -0.27 1.35 16 41 H 0.10 1.67 7.35 -52.49 -0.39 1.29 16 42 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.10 2.40 4.31 -52.49 -0.23 2.17 16 45 H 0.29 7.01 8.29 -40.82 -0.34 6.67 16 46 H 0.09 1.62 5.55 -51.93 -0.29 1.33 16 47 H 0.06 0.76 6.33 -51.92 -0.33 0.43 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -30.86 352.39 -8.06 -38.91 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.22 Total: 9.05 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.88 Total: -16.99 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.25 Total: -32.19 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.38 Total: -21.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.15 Total: 16.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.86 -8.06 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832520312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.333 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds