Wall clock time and date at job start Tue Mar 31 2020 12:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46755 * 2 1 4 4 O 1.42900 * 109.46805 * 240.00336 * 2 1 3 5 5 C 1.52998 * 109.47202 * 120.00189 * 2 1 3 6 6 H 1.08992 * 109.50026 * 64.93770 * 5 2 1 7 7 C 1.53045 * 109.49362 * 185.00037 * 5 2 1 8 8 C 1.53036 * 109.53443 * 181.31226 * 7 5 2 9 9 C 1.53184 * 109.31730 * 298.63454 * 8 7 5 10 10 N 1.46925 * 108.77423 * 54.63934 * 9 8 7 11 11 C 1.34774 * 120.63197 * 126.36826 * 10 9 8 12 12 O 1.21617 * 119.99712 * 185.42789 * 11 10 9 13 13 C 1.47434 * 120.00415 * 5.43370 * 11 10 9 14 14 C 1.39225 * 120.27952 * 48.82925 * 13 11 10 15 15 C 1.38222 * 120.08980 * 179.97438 * 14 13 11 16 16 C 1.38820 * 120.67870 * 0.03930 * 15 14 13 17 17 C 1.37603 * 120.56807 * 359.67709 * 16 15 14 18 18 C 1.40708 * 119.87792 * 0.57937 * 17 16 15 19 19 C 1.40891 * 120.32281 * 179.72068 * 18 17 16 20 20 H 1.08001 * 119.99725 * 210.33563 * 19 18 17 21 21 C 1.40272 * 120.00521 * 30.33722 * 19 18 17 22 22 N 1.30631 * 120.00069 * 192.43732 * 21 19 18 23 23 Si 1.86804 * 119.99713 * 12.43055 * 21 19 18 24 24 H 1.48499 * 109.47321 * 267.24076 * 23 21 19 25 25 H 1.48495 * 109.47020 * 27.24117 * 23 21 19 26 26 H 1.48501 * 109.46580 * 147.24051 * 23 21 19 27 27 C 1.46930 * 118.73837 * 306.64150 * 10 9 8 28 28 H 1.08999 * 109.47251 * 299.99548 * 1 2 3 29 29 H 1.08991 * 109.47449 * 59.99849 * 1 2 3 30 30 H 1.09011 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46548 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47050 * 300.00398 * 3 2 1 33 33 H 1.08999 * 109.46872 * 60.00220 * 3 2 1 34 34 H 0.96697 * 113.99714 * 179.97438 * 4 2 1 35 35 H 1.09004 * 109.45808 * 61.29508 * 7 5 2 36 36 H 1.08997 * 109.45011 * 301.33232 * 7 5 2 37 37 H 1.09005 * 109.49494 * 178.68054 * 8 7 5 38 38 H 1.09001 * 109.49799 * 58.59359 * 8 7 5 39 39 H 1.08997 * 109.58796 * 294.84749 * 9 8 7 40 40 H 1.09003 * 109.70612 * 174.48852 * 9 8 7 41 41 H 1.07998 * 119.95489 * 359.97438 * 14 13 11 42 42 H 1.08001 * 119.66092 * 180.02562 * 15 14 13 43 43 H 1.07996 * 119.71988 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.06228 * 180.32422 * 17 16 15 45 45 H 0.97002 * 119.99708 * 179.97438 * 22 21 19 46 46 H 1.08990 * 109.58881 * 173.14985 * 27 10 9 47 47 H 1.09008 * 109.58073 * 293.57044 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7510 -1.7713 1.2065 7 6 3.5653 -0.6136 1.3142 8 6 4.0792 -1.3626 2.5458 9 6 3.4951 -0.7220 3.8087 10 7 2.0311 -0.6904 3.6891 11 6 1.2517 -1.2178 4.6540 12 8 0.0468 -1.2747 4.4990 13 6 1.8598 -1.7257 5.8973 14 6 2.7792 -0.9492 6.5974 15 6 3.3464 -1.4290 7.7629 16 6 3.0104 -2.6850 8.2493 17 6 2.1006 -3.4732 7.5826 18 6 1.5128 -3.0105 6.3909 19 6 0.5845 -3.8122 5.6976 20 1 0.5015 -3.7361 4.6235 21 6 -0.2318 -4.7092 6.4023 22 7 -0.9122 -5.6185 5.7568 23 14 -0.3458 -4.6035 8.2639 24 1 0.6560 -5.5144 8.8737 25 1 -0.0760 -3.2092 8.6979 26 1 -1.7081 -5.0028 8.6997 27 6 1.4328 -0.0784 2.4948 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.9702 -0.7114 -1.2332 35 1 3.8527 0.4358 1.3812 36 1 3.9987 -1.0521 0.4153 37 1 5.1673 -1.3053 2.5787 38 1 3.7710 -2.4067 2.4915 39 1 3.8753 0.2942 3.9123 40 1 3.7776 -1.3087 4.6828 41 1 3.0495 0.0295 6.2292 42 1 4.0585 -0.8206 8.3006 43 1 3.4628 -3.0444 9.1617 44 1 1.8413 -4.4470 7.9712 45 1 -1.4764 -6.2390 6.2442 46 1 0.3554 -0.2426 2.5008 47 1 1.6415 0.9915 2.4891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832520312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:36 Heat of formation + Delta-G solvation = -96.171912 kcal Electronic energy + Delta-G solvation = -27918.815351 eV Core-core repulsion = 24257.725304 eV Total energy + Delta-G solvation = -3661.090047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56662 -40.14960 -38.77684 -37.44050 -35.62890 -34.31839 -33.28746 -32.41533 -31.92392 -30.29421 -28.46319 -27.45564 -26.25450 -24.87460 -23.82480 -22.94134 -22.22379 -20.68419 -19.89285 -19.34051 -18.49965 -17.73160 -17.32366 -16.87535 -16.30311 -16.15294 -15.84295 -15.69500 -15.48434 -15.40592 -15.02355 -14.78545 -14.42210 -14.27130 -14.00769 -13.82961 -13.71754 -13.51206 -13.40811 -13.13015 -12.84993 -12.79692 -12.66788 -12.57505 -12.41420 -12.22979 -12.04163 -11.94919 -11.78417 -11.69520 -11.61737 -11.16099 -11.06319 -10.85805 -10.50677 -9.63589 -9.49730 -9.39544 -8.95340 -6.56464 0.45946 0.80643 1.19528 1.35368 1.44413 1.93772 2.05860 2.25163 2.60439 3.27697 3.45243 3.56285 3.65542 3.86032 3.97917 4.06802 4.14261 4.17063 4.25082 4.28077 4.34166 4.40361 4.58731 4.64941 4.69185 4.70404 4.78106 4.80559 4.84255 4.89238 4.95551 4.98224 5.01104 5.03750 5.09411 5.13935 5.23457 5.29967 5.33462 5.43140 5.47303 5.68188 5.72288 5.81729 5.92108 6.14314 6.32596 6.50541 6.70369 6.71228 6.85838 7.43993 8.13751 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.004310 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.645751 B = 6494.456550 C = 7439.856297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.141 3.859 3 C -0.175 4.175 4 O -0.574 6.574 5 C -0.121 4.121 6 H 0.036 0.964 7 C -0.110 4.110 8 C -0.132 4.132 9 C 0.099 3.901 10 N -0.613 5.613 11 C 0.569 3.431 12 O -0.590 6.590 13 C -0.255 4.255 14 C -0.040 4.040 15 C -0.226 4.226 16 C -0.061 4.061 17 C -0.253 4.253 18 C 0.101 3.899 19 C -0.453 4.453 20 H 0.036 0.964 21 C 0.037 3.963 22 N -0.849 5.849 23 Si 0.977 3.023 24 H -0.243 1.243 25 H -0.251 1.251 26 H -0.282 1.282 27 C 0.116 3.884 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.388 0.612 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.033 0.967 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.134 0.866 42 H 0.146 0.854 43 H 0.137 0.863 44 H 0.102 0.898 45 H 0.295 0.705 46 H 0.058 0.942 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.490 13.590 -5.625 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.100 3.900 3 C -0.232 4.232 4 O -0.382 6.382 5 C -0.141 4.141 6 H 0.055 0.945 7 C -0.147 4.147 8 C -0.170 4.170 9 C -0.022 4.022 10 N -0.346 5.346 11 C 0.361 3.639 12 O -0.471 6.471 13 C -0.259 4.259 14 C -0.059 4.059 15 C -0.245 4.245 16 C -0.079 4.079 17 C -0.272 4.272 18 C 0.097 3.903 19 C -0.482 4.482 20 H 0.054 0.946 21 C -0.177 4.177 22 N -0.475 5.475 23 Si 0.799 3.201 24 H -0.168 1.168 25 H -0.175 1.175 26 H -0.209 1.209 27 C -0.006 4.006 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.039 13.283 -5.909 18.876 hybrid contribution -0.536 -0.974 0.320 1.157 sum 11.503 12.309 -5.589 17.750 Atomic orbital electron populations 1.21890 0.94116 1.01646 1.02967 1.21041 0.93882 0.91954 0.83143 1.22548 1.03023 0.94294 1.03301 1.86549 1.28083 1.80048 1.43560 1.22033 0.98245 0.99012 0.94773 0.94506 1.21670 0.92184 1.02475 0.98360 1.21912 1.02040 0.98581 0.94501 1.22104 0.77726 1.02727 0.99673 1.48127 1.07793 1.59151 1.19538 1.18690 0.85756 0.75288 0.84125 1.90673 1.17313 1.57807 1.81281 1.19678 1.08873 0.97045 1.00341 1.21113 0.92299 0.97977 0.94496 1.20903 1.06898 0.97553 0.99113 1.21199 0.94463 0.94093 0.98162 1.21155 1.04767 1.01162 1.00100 1.17673 0.90655 0.90372 0.91569 1.19341 1.17403 1.16564 0.94851 0.94592 1.27075 0.92935 0.91388 1.06287 1.69620 1.22834 1.13639 1.41448 0.85378 0.77413 0.81091 0.76178 1.16829 1.17486 1.20906 1.21645 0.98005 0.97516 0.83471 0.90747 0.90763 0.94513 0.89670 0.91334 0.90883 0.76204 0.88348 0.89866 0.87422 0.94849 0.88377 0.89919 0.84787 0.83642 0.84482 0.88087 0.89462 0.92314 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.36 71.98 0.60 -3.20 16 2 C 0.14 3.06 0.93 -10.79 -0.01 3.05 16 3 C -0.17 -2.56 8.09 71.98 0.58 -1.98 16 4 O -0.57 -12.71 12.97 -148.98 -1.93 -14.64 16 5 C -0.12 -3.13 1.93 -10.86 -0.02 -3.15 16 6 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 7 C -0.11 -1.97 4.45 30.62 0.14 -1.83 16 8 C -0.13 -2.94 6.08 30.67 0.19 -2.75 16 9 C 0.10 2.61 5.28 86.36 0.46 3.07 16 10 N -0.61 -21.89 2.98 -823.61 -2.45 -24.35 16 11 C 0.57 27.32 6.52 86.67 0.57 27.89 16 12 O -0.59 -34.22 15.26 -4.09 -0.06 -34.28 16 13 C -0.25 -11.97 4.86 -19.70 -0.10 -12.07 16 14 C -0.04 -1.47 7.54 22.50 0.17 -1.30 16 15 C -0.23 -7.45 10.03 22.41 0.22 -7.22 16 16 C -0.06 -2.24 10.01 22.26 0.22 -2.02 16 17 C -0.25 -11.64 6.98 22.72 0.16 -11.49 16 18 C 0.10 5.34 5.18 -21.11 -0.11 5.23 16 19 C -0.45 -27.63 8.39 23.41 0.20 -27.44 16 20 H 0.04 2.50 7.29 -2.91 -0.02 2.48 16 21 C 0.04 2.15 5.47 85.37 0.47 2.62 16 22 N -0.85 -50.28 13.92 21.88 0.30 -49.98 16 23 Si 0.98 45.06 24.39 68.60 1.67 46.74 16 24 H -0.24 -10.05 6.67 99.48 0.66 -9.38 16 25 H -0.25 -11.80 6.64 99.48 0.66 -11.14 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.12 3.53 4.89 86.22 0.42 3.95 16 28 H 0.07 1.87 6.48 -2.39 -0.02 1.86 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.11 8.14 -2.38 -0.02 1.10 16 31 H 0.08 0.88 6.38 -2.39 -0.02 0.86 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.04 6.46 -2.39 -0.02 1.03 16 34 H 0.39 5.39 7.50 -74.06 -0.56 4.83 16 35 H 0.10 1.23 6.43 -2.38 -0.02 1.22 16 36 H 0.08 1.17 6.83 -2.39 -0.02 1.16 16 37 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 2.48 5.13 -2.39 -0.01 2.47 16 41 H 0.13 3.89 7.35 -2.91 -0.02 3.87 16 42 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 44 H 0.10 4.63 4.31 -2.91 -0.01 4.62 16 45 H 0.29 15.57 8.29 -92.71 -0.77 14.80 16 46 H 0.06 2.22 5.55 -2.39 -0.01 2.21 16 47 H 0.10 2.23 6.33 -2.38 -0.02 2.22 16 Total: -1.00 -78.93 352.39 2.03 -76.89 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.35 Total: 28.25 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 4.15 Total: -28.63 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -2.15 Total: -74.33 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -1.99 Total: -48.92 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.74 kcal Total: -78.93 2.03 -76.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832520312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.280 kcal (2) G-P(sol) polarization free energy of solvation -78.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds