Wall clock time and date at job start Tue Mar 31 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 O 1.42902 * 109.47095 * 240.00105 * 2 1 3 5 5 C 1.53002 * 109.47463 * 120.00167 * 2 1 3 6 6 H 1.09001 * 109.49769 * 299.93531 * 5 2 1 7 7 C 1.53035 * 109.49974 * 179.83931 * 5 2 1 8 8 C 1.53041 * 109.53981 * 178.68415 * 7 5 2 9 9 C 1.52760 * 109.38457 * 61.23656 * 8 7 5 10 10 N 1.46929 * 109.00912 * 305.59260 * 9 8 7 11 11 C 1.34773 * 120.62762 * 233.58019 * 10 9 8 12 12 O 1.21609 * 119.99727 * 173.95895 * 11 10 9 13 13 C 1.47432 * 120.00379 * 353.96397 * 11 10 9 14 14 C 1.39227 * 120.28075 * 314.05481 * 13 11 10 15 15 C 1.38218 * 120.09125 * 179.97438 * 14 13 11 16 16 C 1.38824 * 120.67507 * 0.02921 * 15 14 13 17 17 C 1.37596 * 120.57247 * 359.97438 * 16 15 14 18 18 C 1.40702 * 119.88168 * 359.97438 * 17 16 15 19 19 C 1.40887 * 120.32852 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99935 * 149.90547 * 19 18 17 21 21 C 1.40269 * 119.99984 * 329.91190 * 19 18 17 22 22 N 1.30629 * 120.00380 * 344.93023 * 21 19 18 23 23 Si 1.86801 * 119.99995 * 164.93017 * 21 19 18 24 24 H 1.48503 * 109.46980 * 90.00012 * 23 21 19 25 25 H 1.48501 * 109.47210 * 209.99681 * 23 21 19 26 26 H 1.48502 * 109.47467 * 330.00002 * 23 21 19 27 27 C 1.46928 * 118.73651 * 53.30644 * 10 9 8 28 28 H 1.09001 * 109.46780 * 299.99260 * 1 2 3 29 29 H 1.08997 * 109.47298 * 59.99663 * 1 2 3 30 30 H 1.09004 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47199 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47352 * 300.00304 * 3 2 1 33 33 H 1.09002 * 109.47347 * 60.00269 * 3 2 1 34 34 H 0.96698 * 114.00265 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.45717 * 298.70699 * 7 5 2 36 36 H 1.08994 * 109.46201 * 58.67253 * 7 5 2 37 37 H 1.08995 * 109.49723 * 181.31444 * 8 7 5 38 38 H 1.09000 * 109.49472 * 301.37696 * 8 7 5 39 39 H 1.08995 * 109.50916 * 185.70568 * 9 8 7 40 40 H 1.09002 * 109.42735 * 65.42435 * 9 8 7 41 41 H 1.08004 * 119.95447 * 359.97438 * 14 13 11 42 42 H 1.08004 * 119.65804 * 180.02562 * 15 14 13 43 43 H 1.08001 * 119.71169 * 179.72350 * 16 15 14 44 44 H 1.08004 * 120.05511 * 179.97438 * 17 16 15 45 45 H 0.96998 * 120.00036 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.58460 * 66.43449 * 27 10 9 47 47 H 1.09004 * 109.57972 * 186.85337 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.6780 -0.2071 2.1395 7 6 3.5704 -0.7251 1.2478 8 6 4.0818 -1.4175 2.5132 9 6 3.5943 -2.8651 2.5313 10 7 2.1325 -2.8797 2.3837 11 6 1.3589 -3.5310 3.2746 12 8 0.1478 -3.4451 3.2055 13 6 1.9808 -4.3475 4.3330 14 6 3.0156 -5.2265 4.0248 15 6 3.5961 -5.9897 5.0202 16 6 3.1582 -5.8920 6.3339 17 6 2.1376 -5.0324 6.6693 18 6 1.5303 -4.2434 5.6751 19 6 0.4848 -3.3597 6.0081 20 1 0.3437 -2.4519 5.4403 21 6 -0.3726 -3.6588 7.0771 22 7 -0.4009 -4.8667 7.5735 23 14 -1.4741 -2.3297 7.7910 24 1 -2.7744 -2.3264 7.0738 25 1 -1.7049 -2.5997 9.2329 26 1 -0.8187 -1.0063 7.6339 27 6 1.5298 -2.1657 1.2498 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.9703 -0.7115 -1.2332 35 1 3.9314 -1.2607 0.3696 36 1 3.9361 0.3013 1.2227 37 1 5.1715 -1.3992 2.5228 38 1 3.7014 -0.8966 3.3918 39 1 3.8707 -3.3305 3.4773 40 1 4.0503 -3.4116 1.7058 41 1 3.3651 -5.3121 3.0064 42 1 4.3987 -6.6690 4.7733 43 1 3.6200 -6.4990 7.0986 44 1 1.8032 -4.9633 7.6940 45 1 -0.9941 -5.0736 8.3126 46 1 1.8141 -2.6541 0.3177 47 1 0.4445 -2.1698 1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832520314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:42 Heat of formation + Delta-G solvation = -78.932005 kcal Electronic energy + Delta-G solvation = -27853.575675 eV Core-core repulsion = 24193.233206 eV Total energy + Delta-G solvation = -3660.342469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.13664 -38.62639 -36.91352 -35.93825 -33.77613 -32.97125 -31.92167 -30.52977 -29.83852 -29.03002 -27.70169 -25.62932 -24.67681 -23.48562 -21.97910 -20.96863 -20.86201 -19.76648 -18.54953 -17.27491 -16.87984 -16.17868 -15.64001 -15.32171 -14.96152 -14.67705 -14.58540 -14.24371 -14.18175 -13.72326 -13.30554 -13.20978 -12.86774 -12.73308 -12.51362 -12.24398 -12.23727 -12.15576 -12.01188 -11.70164 -11.64241 -11.50365 -11.19917 -11.10713 -10.98745 -10.81720 -10.75567 -10.66119 -10.47327 -10.12135 -9.95924 -9.88223 -9.63794 -9.24370 -8.63871 -7.98842 -7.51504 -7.44788 -6.83972 -4.41935 2.48142 2.79870 3.06141 3.10975 3.20365 3.64311 3.92401 3.97663 4.15377 4.57222 4.59194 4.68035 4.81873 4.96289 5.12184 5.21770 5.37578 5.47248 5.53729 5.55710 5.59655 5.66037 5.71453 5.80712 5.84011 5.88918 5.94447 5.98350 6.05495 6.10390 6.16410 6.22538 6.22947 6.31099 6.39676 6.46296 6.58890 6.96418 7.08365 7.17326 7.22311 7.44631 7.57737 7.66823 7.85189 7.95705 8.12885 8.25262 8.54146 8.77212 8.84813 9.27749 10.11568 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.004600 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.388097 B = 6085.850157 C = 7430.191905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.135 3.865 3 C -0.178 4.178 4 O -0.558 6.558 5 C -0.127 4.127 6 H 0.082 0.918 7 C -0.117 4.117 8 C -0.134 4.134 9 C 0.107 3.893 10 N -0.623 5.623 11 C 0.582 3.418 12 O -0.538 6.538 13 C -0.255 4.255 14 C -0.058 4.058 15 C -0.248 4.248 16 C -0.093 4.093 17 C -0.156 4.156 18 C 0.149 3.851 19 C -0.429 4.429 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.785 5.785 23 Si 0.910 3.090 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.260 1.260 27 C 0.123 3.877 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.371 0.629 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.283 0.717 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 9.164 -9.804 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.094 3.906 3 C -0.236 4.236 4 O -0.364 6.364 5 C -0.147 4.147 6 H 0.100 0.900 7 C -0.155 4.155 8 C -0.172 4.172 9 C -0.016 4.016 10 N -0.358 5.358 11 C 0.374 3.626 12 O -0.415 6.415 13 C -0.260 4.260 14 C -0.077 4.077 15 C -0.268 4.268 16 C -0.112 4.112 17 C -0.175 4.175 18 C 0.145 3.855 19 C -0.458 4.458 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.409 5.409 23 Si 0.734 3.266 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.184 1.184 27 C 0.000 4.000 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.219 0.781 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.134 0.866 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.236 8.981 -9.754 14.652 hybrid contribution 0.177 0.527 0.477 0.733 sum 6.413 9.508 -9.277 14.751 Atomic orbital electron populations 1.21812 0.92575 1.03433 1.02193 1.21160 0.94880 0.90271 0.84319 1.22523 1.01566 0.96826 1.02641 1.86554 1.26392 1.79593 1.43903 1.22186 0.96123 0.97611 0.98745 0.89983 1.21637 0.94892 1.00474 0.98477 1.21838 1.00334 0.96857 0.98188 1.21714 0.80662 0.95992 1.03273 1.48126 1.06511 1.53715 1.27447 1.18551 0.86150 0.78008 0.79843 1.90678 1.14395 1.63530 1.72884 1.19411 1.05909 1.07337 0.93340 1.20635 0.94388 0.95752 0.96936 1.20256 1.05841 1.06922 0.93763 1.20774 0.97122 0.97993 0.95281 1.21256 0.96739 1.00131 0.99396 1.17363 0.89899 0.89608 0.88650 1.19582 1.09414 1.06104 1.10656 0.90121 1.25966 0.97262 0.95818 0.95118 1.69718 1.31789 1.19133 1.20253 0.86272 0.80457 0.81679 0.78178 1.19189 1.20011 1.18408 1.21408 0.99763 0.90020 0.88847 0.91065 0.92130 0.91254 0.92084 0.92008 0.91566 0.78106 0.92021 0.91748 0.91080 0.91374 0.88044 0.92702 0.88966 0.89126 0.89148 0.86572 0.90581 0.91904 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.50 37.16 0.32 -1.35 16 2 C 0.13 1.47 0.84 -90.62 -0.08 1.39 16 3 C -0.18 -1.59 8.47 37.16 0.31 -1.28 16 4 O -0.56 -6.18 12.18 -35.23 -0.43 -6.61 16 5 C -0.13 -1.59 1.76 -90.50 -0.16 -1.75 16 6 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 7 C -0.12 -1.22 4.51 -26.69 -0.12 -1.34 16 8 C -0.13 -1.64 6.06 -26.83 -0.16 -1.80 16 9 C 0.11 1.61 5.10 -3.93 -0.02 1.59 16 10 N -0.62 -11.44 2.98 -174.30 -0.52 -11.96 16 11 C 0.58 13.69 6.62 -12.52 -0.08 13.61 16 12 O -0.54 -14.55 15.04 5.27 0.08 -14.47 16 13 C -0.26 -6.23 4.96 -104.37 -0.52 -6.75 16 14 C -0.06 -1.26 7.48 -39.22 -0.29 -1.55 16 15 C -0.25 -5.26 10.03 -39.37 -0.39 -5.65 16 16 C -0.09 -2.08 10.01 -39.60 -0.40 -2.48 16 17 C -0.16 -3.93 8.65 -38.89 -0.34 -4.27 16 18 C 0.15 3.95 5.53 -106.55 -0.59 3.36 16 19 C -0.43 -11.69 7.79 -37.82 -0.29 -11.98 16 20 H 0.08 2.25 7.02 -52.49 -0.37 1.88 16 21 C 0.08 1.99 5.16 -17.30 -0.09 1.90 16 22 N -0.78 -20.41 11.18 55.56 0.62 -19.79 16 23 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 27 C 0.12 1.95 5.12 -3.71 -0.02 1.93 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.91 6.56 -51.93 -0.34 0.57 16 31 H 0.06 0.47 6.41 -51.93 -0.33 0.14 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.37 2.97 7.36 45.56 0.34 3.30 16 35 H 0.06 0.57 6.84 -51.93 -0.36 0.21 16 36 H 0.06 0.57 6.37 -51.93 -0.33 0.24 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.72 5.05 -51.93 -0.26 1.46 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.75 7.14 -52.48 -0.37 1.37 16 42 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.12 2.99 6.49 -52.48 -0.34 2.65 16 45 H 0.28 6.67 8.29 -40.82 -0.34 6.33 16 46 H 0.06 0.95 7.54 -51.93 -0.39 0.56 16 47 H 0.09 1.64 5.61 -51.93 -0.29 1.35 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -30.47 360.80 -9.18 -39.64 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.41 Total: 9.87 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.92 Total: -16.41 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.10 Total: -31.75 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.35 Total: -21.08 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.47 -9.18 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832520314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.288 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds